Hello,
Ah, I see why now. I did do a full installation, during which the _cmd and
sglite extension files, etc. were copied to
C:\Python22\Lib\site-packages\pymol. According to comment in
C:\Python22\Lib\site.py, a path configuration file must exist in the
\site-packages directory indicating which sub-directories are to be appended
to sys.path. So I added a file, pymol.pth in \site-packages that contains:
# pymol package configuration
pymol
Now Python knows where to look for modules. And it works.
Thanks so much!
Tina
- Original Message -
From: Warren L. DeLano war...@delanoscientific.com
To: 'Tina Li' t...@bioinformaticssolutions.com;
pymol-users@lists.sourceforge.net
Sent: Wednesday, August 27, 2003 2:32 PM
Subject: RE: [PyMOL] Re: cannot find _cmd module
| Tina,
|
| Did you do a full installation? After running:
|
| python setup.py build install
| python setup2.py
|
| (in that order)
|
| pymol.bat should just work. There shouldn't be any need to copy
| anything over, nor should you set PYMOL_PATH -- that is all taken care
| of automatically with this approach.
|
| Cheers,
| Warren
|
|
| --
| mailto:war...@delanoscientific.com
| Warren L. DeLano, Ph.D.
| Principal Scientist
| DeLano Scientific LLC
| Voice (650)-346-1154
| Fax (650)-593-4020
|
| -Original Message-
| From: pymol-users-ad...@lists.sourceforge.net [mailto:pymol-users-
| ad...@lists.sourceforge.net] On Behalf Of Tina Li
| Sent: Wednesday, August 27, 2003 8:34 AM
| To: pymol-users@lists.sourceforge.net
| Subject: [PyMOL] Re: cannot find _cmd module
|
| Hello,
|
| So I figured that in my $PYMOL_PATH\build\lib.win32-2.2\pymol, there
| is a
| _cmd.pyd that's missing in $PYMOL_PATH\modules\pymol. I copied it
| over,
| and
| PyMOL started up, but said that it failed to import the xray module,
| which
| however exists in $PYMOL_PATH\modules\pymol, so I don't understand why
| it
| doesn't import that. Anyways, it seems to be up. I guess every time I
| build
| PyMOL, I'll have to copy the _cmd.pyd file over.
|
| Tina
|
| - Original Message -
| | From: Tina Li t...@bioinformaticssolutions.com
| | To: pymol-users@lists.sourceforge.net
| | Date: Mon, 25 Aug 2003 11:57:27 -0400
| | Subject: [PyMOL] cannot find _cmd module
| |
| | Hello,
| |
| | Eh, I think this is a rather basic question. So I built PyMOL on
| Win32,
| tried
| | to run pymol.bat, which calls python
| $PYMOL_PATH/modules/pymol/__init__.py,
| | which complained:
| |
| | Traceback (most recent call last):
| | File D:\thli\root\misc\pymol-0.90\modules\pymol\__init__.py,
| line
| 92, in
| ?
| | import pymol
| | File D:\thli\root\misc\pymol-0.90\modules\pymol\__init__.py,
| line
| 300,
| in
| | ?
| | import _cmd
| | ImportError: No module named _cmd
| |
| | I have PYTHONPATH set to $PYMOL_PATH/modules. Is it something
| obvious
| I'm
| | missing?
| |
| | Thanks much!
| |
| | Tina
|
|
|
|
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