Re: [Pytables-users] PyTables broke in Ubuntu 12.10
Hi Jason, Il giorno 26/ott/2012, alle ore 07:28, Jason Moore moorepa...@gmail.com ha scritto: So it looks like python-tables in Ubuntu 12.10 requires libhdf5-7 and libhdf5-7 has /usr/lib/libhdf5.so.7 not libhdf5.so.6. Correct, the hdf5 package has been updated in ubuntu 12.10. If you use the standard python-tables package from ubuntu repositories please file a bug report on launchpad. Jason On Thu, Oct 25, 2012 at 4:10 PM, Aquil Abdullah aquil.abdul...@gmail.com wrote: Can you check to see if libhdf5.so is in your path? If not, you can add it to the path where it resides to your PATH variable. Hopefully, that helps. Aquil H. Abdullah On Oct 25, 2012, at 18:42, Jason Moore moorepa...@gmail.com wrote: I just updated to Ubuntu 12.10 and my pytables install is broken. I reinstalled and it seems like I have hdf5 1.8.4 installed but I get this error: moorepants@moorepants-LT:BicycleDataProcessor(master)$ vitables InstrumentedBicycleData.h5 Traceback (most recent call last): File /usr/bin/vitables, line 105, in module main(sys.argv) File /usr/bin/vitables, line 48, in main from vitables.vtapp import VTApp File /usr/share/vitables/vitables/vtapp.py, line 35, in module import tables File /usr/local/lib/python2.7/dist-packages/tables/__init__.py, line 30, in module from tables.utilsExtension import getPyTablesVersion, getHDF5Version ImportError: libhdf5.so.6: cannot open shared object file: No such file or directory What am I missing? Jason Anyway you can also use the eotools PPA [1] that has a more updated version of pytables: 2.4 against 2.3.1 of the official universe repo. [1] https://launchpad.net/~a.valentino/+archive/eotools?field.series_filter=quantal best regards -- Antonio Valentino -- Everyone hates slow websites. So do we. Make your web apps faster with AppDynamics Download AppDynamics Lite for free today: http://p.sf.net/sfu/appdyn_sfd2d_oct ___ Pytables-users mailing list Pytables-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/pytables-users
Re: [Pytables-users] PyTables broke in Ubuntu 12.10
Where exactly do I submit the bug report? There doesn't seem to be a bug option here: https://launchpad.net/ubuntu/quantal/+package/python-tables Jason On Thu, Oct 25, 2012 at 11:27 PM, Antonio Valentino antonio.valent...@tiscali.it wrote: Hi Jason, Il giorno 26/ott/2012, alle ore 07:28, Jason Moore moorepa...@gmail.com ha scritto: So it looks like python-tables in Ubuntu 12.10 requires libhdf5-7 and libhdf5-7 has /usr/lib/libhdf5.so.7 not libhdf5.so.6. Correct, the hdf5 package has been updated in ubuntu 12.10. If you use the standard python-tables package from ubuntu repositories please file a bug report on launchpad. Jason On Thu, Oct 25, 2012 at 4:10 PM, Aquil Abdullah aquil.abdul...@gmail.com wrote: Can you check to see if libhdf5.so is in your path? If not, you can add it to the path where it resides to your PATH variable. Hopefully, that helps. Aquil H. Abdullah On Oct 25, 2012, at 18:42, Jason Moore moorepa...@gmail.com wrote: I just updated to Ubuntu 12.10 and my pytables install is broken. I reinstalled and it seems like I have hdf5 1.8.4 installed but I get this error: moorepants@moorepants-LT:BicycleDataProcessor(master)$ vitables InstrumentedBicycleData.h5 Traceback (most recent call last): File /usr/bin/vitables, line 105, in module main(sys.argv) File /usr/bin/vitables, line 48, in main from vitables.vtapp import VTApp File /usr/share/vitables/vitables/vtapp.py, line 35, in module import tables File /usr/local/lib/python2.7/dist-packages/tables/__init__.py, line 30, in module from tables.utilsExtension import getPyTablesVersion, getHDF5Version ImportError: libhdf5.so.6: cannot open shared object file: No such file or directory What am I missing? Jason Anyway you can also use the eotools PPA [1] that has a more updated version of pytables: 2.4 against 2.3.1 of the official universe repo. [1] https://launchpad.net/~a.valentino/+archive/eotools?field.series_filter=quantal best regards -- Antonio Valentino -- Everyone hates slow websites. So do we. Make your web apps faster with AppDynamics Download AppDynamics Lite for free today: http://p.sf.net/sfu/appdyn_sfd2d_oct ___ Pytables-users mailing list Pytables-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/pytables-users -- Personal Website http://biosport.ucdavis.edu/lab-members/jason-moore Davis Bike Collective http://www.davisbikecollective.org Minister, Davis, CA BikeDavis.info Google Voice: +01 530-601-9791 Home: +01 530-753-0794 -- The Windows 8 Center In partnership with Sourceforge Your idea - your app - 30 days. Get started! http://windows8center.sourceforge.net/ what-html-developers-need-to-know-about-coding-windows-8-metro-style-apps/___ Pytables-users mailing list Pytables-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/pytables-users
Re: [Pytables-users] PyTables broke in Ubuntu 12.10
Hi Jason, Il 26/10/2012 18:44, Jason Moore ha scritto: Where exactly do I submit the bug report? There doesn't seem to be a bug option here: https://launchpad.net/ubuntu/quantal/+package/python-tables Jason of course you need a launchpad account, than you can follow instruction of the ReportingBugs page on the ubuntu wiki [1] [1] https://help.ubuntu.com/community/ReportingBugs ciao On Thu, Oct 25, 2012 at 11:27 PM, Antonio Valentino antonio.valent...@tiscali.it wrote: Hi Jason, Il giorno 26/ott/2012, alle ore 07:28, Jason Moore moorepa...@gmail.com ha scritto: So it looks like python-tables in Ubuntu 12.10 requires libhdf5-7 and libhdf5-7 has /usr/lib/libhdf5.so.7 not libhdf5.so.6. Correct, the hdf5 package has been updated in ubuntu 12.10. If you use the standard python-tables package from ubuntu repositories please file a bug report on launchpad. Jason On Thu, Oct 25, 2012 at 4:10 PM, Aquil Abdullah aquil.abdul...@gmail.com wrote: Can you check to see if libhdf5.so is in your path? If not, you can add it to the path where it resides to your PATH variable. Hopefully, that helps. Aquil H. Abdullah On Oct 25, 2012, at 18:42, Jason Moore moorepa...@gmail.com wrote: I just updated to Ubuntu 12.10 and my pytables install is broken. I reinstalled and it seems like I have hdf5 1.8.4 installed but I get this error: moorepants@moorepants-LT:BicycleDataProcessor(master)$ vitables InstrumentedBicycleData.h5 Traceback (most recent call last): File /usr/bin/vitables, line 105, in module main(sys.argv) File /usr/bin/vitables, line 48, in main from vitables.vtapp import VTApp File /usr/share/vitables/vitables/vtapp.py, line 35, in module import tables File /usr/local/lib/python2.7/dist-packages/tables/__init__.py, line 30, in module from tables.utilsExtension import getPyTablesVersion, getHDF5Version ImportError: libhdf5.so.6: cannot open shared object file: No such file or directory What am I missing? Jason Anyway you can also use the eotools PPA [1] that has a more updated version of pytables: 2.4 against 2.3.1 of the official universe repo. [1] https://launchpad.net/~a.valentino/+archive/eotools?field.series_filter=quantal best regards -- Antonio Valentino -- Antonio Valentino -- The Windows 8 Center In partnership with Sourceforge Your idea - your app - 30 days. Get started! http://windows8center.sourceforge.net/ what-html-developers-need-to-know-about-coding-windows-8-metro-style-apps/ ___ Pytables-users mailing list Pytables-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/pytables-users
Re: [Pytables-users] PyTables broke in Ubuntu 12.10
I'll post the bug report, but I'd like to get this working on my system. I've always had trouble compiling pytables from source due to the dependencies. Right now I just need to get this working because I can no longer use my software now that PyTabes is broken. Question 1: What are the exact command for installing for source (including all flags)? I can't find this explicitly in the documentation especially how to use the --hdf5 flag and other flags to point to where the dependencies are installed. I'm trying: sudo python setup.py build_ext --inplace --hdf5=/usr/lib/libhdf5.so.7 But having little luck. It still can't find my hdf5 library. Question 2: I tried your pytables2.4 ppa but it also can't find the hdf5 library. How can I install the old /usr/lib/lbhdf5.so.6 file? I also remember it being painful to install the HDF5 libraries from source. Is this file available in the Ubuntu repositories? Jason On Fri, Oct 26, 2012 at 10:16 AM, Antonio Valentino antonio.valent...@tiscali.it wrote: Hi Jason, Il 26/10/2012 18:44, Jason Moore ha scritto: Where exactly do I submit the bug report? There doesn't seem to be a bug option here: https://launchpad.net/ubuntu/quantal/+package/python-tables Jason of course you need a launchpad account, than you can follow instruction of the ReportingBugs page on the ubuntu wiki [1] [1] https://help.ubuntu.com/community/ReportingBugs ciao On Thu, Oct 25, 2012 at 11:27 PM, Antonio Valentino antonio.valent...@tiscali.it wrote: Hi Jason, Il giorno 26/ott/2012, alle ore 07:28, Jason Moore moorepa...@gmail.com ha scritto: So it looks like python-tables in Ubuntu 12.10 requires libhdf5-7 and libhdf5-7 has /usr/lib/libhdf5.so.7 not libhdf5.so.6. Correct, the hdf5 package has been updated in ubuntu 12.10. If you use the standard python-tables package from ubuntu repositories please file a bug report on launchpad. Jason On Thu, Oct 25, 2012 at 4:10 PM, Aquil Abdullah aquil.abdul...@gmail.com wrote: Can you check to see if libhdf5.so is in your path? If not, you can add it to the path where it resides to your PATH variable. Hopefully, that helps. Aquil H. Abdullah On Oct 25, 2012, at 18:42, Jason Moore moorepa...@gmail.com wrote: I just updated to Ubuntu 12.10 and my pytables install is broken. I reinstalled and it seems like I have hdf5 1.8.4 installed but I get this error: moorepants@moorepants-LT:BicycleDataProcessor(master)$ vitables InstrumentedBicycleData.h5 Traceback (most recent call last): File /usr/bin/vitables, line 105, in module main(sys.argv) File /usr/bin/vitables, line 48, in main from vitables.vtapp import VTApp File /usr/share/vitables/vitables/vtapp.py, line 35, in module import tables File /usr/local/lib/python2.7/dist-packages/tables/__init__.py, line 30, in module from tables.utilsExtension import getPyTablesVersion, getHDF5Version ImportError: libhdf5.so.6: cannot open shared object file: No such file or directory What am I missing? Jason Anyway you can also use the eotools PPA [1] that has a more updated version of pytables: 2.4 against 2.3.1 of the official universe repo. [1] https://launchpad.net/~a.valentino/+archive/eotools?field.series_filter=quantal best regards -- Antonio Valentino -- Antonio Valentino -- The Windows 8 Center In partnership with Sourceforge Your idea - your app - 30 days. Get started! http://windows8center.sourceforge.net/ what-html-developers-need-to-know-about-coding-windows-8-metro-style-apps/ ___ Pytables-users mailing list Pytables-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/pytables-users -- Personal Website http://biosport.ucdavis.edu/lab-members/jason-moore Davis Bike Collective http://www.davisbikecollective.org Minister, Davis, CA BikeDavis.info Google Voice: +01 530-601-9791 Home: +01 530-753-0794 -- WINDOWS 8 is here. Millions of people. Your app in 30 days. Visit The Windows 8 Center at Sourceforge for all your go to resources. http://windows8center.sourceforge.net/ join-generation-app-and-make-money-coding-fast/___ Pytables-users mailing list Pytables-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/pytables-users
Re: [Pytables-users] PyTables broke in Ubuntu 12.10
Solution was simple once I found it. Here is the workaround: https://bugs.launchpad.net/ubuntu/+source/octave/+bug/1005243 Just make a symlink to the new file. Jason On Fri, Oct 26, 2012 at 12:37 PM, Jason Moore moorepa...@gmail.com wrote: I'll post the bug report, but I'd like to get this working on my system. I've always had trouble compiling pytables from source due to the dependencies. Right now I just need to get this working because I can no longer use my software now that PyTabes is broken. Question 1: What are the exact command for installing for source (including all flags)? I can't find this explicitly in the documentation especially how to use the --hdf5 flag and other flags to point to where the dependencies are installed. I'm trying: sudo python setup.py build_ext --inplace --hdf5=/usr/lib/libhdf5.so.7 But having little luck. It still can't find my hdf5 library. Question 2: I tried your pytables2.4 ppa but it also can't find the hdf5 library. How can I install the old /usr/lib/lbhdf5.so.6 file? I also remember it being painful to install the HDF5 libraries from source. Is this file available in the Ubuntu repositories? Jason On Fri, Oct 26, 2012 at 10:16 AM, Antonio Valentino antonio.valent...@tiscali.it wrote: Hi Jason, Il 26/10/2012 18:44, Jason Moore ha scritto: Where exactly do I submit the bug report? There doesn't seem to be a bug option here: https://launchpad.net/ubuntu/quantal/+package/python-tables Jason of course you need a launchpad account, than you can follow instruction of the ReportingBugs page on the ubuntu wiki [1] [1] https://help.ubuntu.com/community/ReportingBugs ciao On Thu, Oct 25, 2012 at 11:27 PM, Antonio Valentino antonio.valent...@tiscali.it wrote: Hi Jason, Il giorno 26/ott/2012, alle ore 07:28, Jason Moore moorepa...@gmail.com ha scritto: So it looks like python-tables in Ubuntu 12.10 requires libhdf5-7 and libhdf5-7 has /usr/lib/libhdf5.so.7 not libhdf5.so.6. Correct, the hdf5 package has been updated in ubuntu 12.10. If you use the standard python-tables package from ubuntu repositories please file a bug report on launchpad. Jason On Thu, Oct 25, 2012 at 4:10 PM, Aquil Abdullah aquil.abdul...@gmail.com wrote: Can you check to see if libhdf5.so is in your path? If not, you can add it to the path where it resides to your PATH variable. Hopefully, that helps. Aquil H. Abdullah On Oct 25, 2012, at 18:42, Jason Moore moorepa...@gmail.com wrote: I just updated to Ubuntu 12.10 and my pytables install is broken. I reinstalled and it seems like I have hdf5 1.8.4 installed but I get this error: moorepants@moorepants-LT:BicycleDataProcessor(master)$ vitables InstrumentedBicycleData.h5 Traceback (most recent call last): File /usr/bin/vitables, line 105, in module main(sys.argv) File /usr/bin/vitables, line 48, in main from vitables.vtapp import VTApp File /usr/share/vitables/vitables/vtapp.py, line 35, in module import tables File /usr/local/lib/python2.7/dist-packages/tables/__init__.py, line 30, in module from tables.utilsExtension import getPyTablesVersion, getHDF5Version ImportError: libhdf5.so.6: cannot open shared object file: No such file or directory What am I missing? Jason Anyway you can also use the eotools PPA [1] that has a more updated version of pytables: 2.4 against 2.3.1 of the official universe repo. [1] https://launchpad.net/~a.valentino/+archive/eotools?field.series_filter=quantal best regards -- Antonio Valentino -- Antonio Valentino -- The Windows 8 Center In partnership with Sourceforge Your idea - your app - 30 days. Get started! http://windows8center.sourceforge.net/ what-html-developers-need-to-know-about-coding-windows-8-metro-style-apps/ ___ Pytables-users mailing list Pytables-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/pytables-users -- Personal Website http://biosport.ucdavis.edu/lab-members/jason-moore Davis Bike Collective http://www.davisbikecollective.org Minister, Davis, CA BikeDavis.info Google Voice: +01 530-601-9791 Home: +01 530-753-0794 -- Personal Website http://biosport.ucdavis.edu/lab-members/jason-moore Davis Bike Collective http://www.davisbikecollective.org Minister, Davis, CA BikeDavis.info Google Voice: +01 530-601-9791 Home: +01 530-753-0794 -- WINDOWS 8 is here. Millions of people. Your app in 30 days. Visit The Windows 8 Center at Sourceforge for all your go to resources. http://windows8center.sourceforge.net/ join-generation-app-and-make-money-coding-fast/___ Pytables-users mailing list
Re: [Pytables-users] PyTables broke in Ubuntu 12.10
Hi Jason, Il 26/10/2012 21:37, Jason Moore ha scritto: I'll post the bug report, but I'd like to get this working on my system. I've always had trouble compiling pytables from source due to the dependencies. Right now I just need to get this working because I can no longer use my software now that PyTabes is broken. If you use ubuntu 12.04 you can install build dependencies as follows: $ sudo apt-get install libhdf5-dev python-dev cython python-numexpr libbz2-dev zlib1g-dev, liblzo2-dev or simply $ sudo apt-get build-dep pytables Then you can build pytables typing python setup.py build Question 1: What are the exact command for installing for source (including all flags)? I can't find this explicitly in the documentation especially how to use the --hdf5 flag and other flags to point to where the dependencies are installed. I'm trying: sudo python setup.py build_ext --inplace --hdf5=/usr/lib/libhdf5.so.7 But having little luck. It still can't find my hdf5 library. The use of the --hdf5 flag is explained in [1], anyway you should not need it on ubuntu. [1] http://pytables.github.com/usersguide/installation.html Question 2: I tried your pytables2.4 ppa but it also can't find the hdf5 library. How can I install the old /usr/lib/lbhdf5.so.6 file? I also remember it being painful to install the HDF5 libraries from source. Is this file available in the Ubuntu repositories? This is very strange. It seems to me a misconfiguration of the apt system. Are you sure that all you apt sources point to quantal? Maybe some of them still points to precise cheers -- Antonio Valentino -- WINDOWS 8 is here. Millions of people. Your app in 30 days. Visit The Windows 8 Center at Sourceforge for all your go to resources. http://windows8center.sourceforge.net/ join-generation-app-and-make-money-coding-fast/ ___ Pytables-users mailing list Pytables-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/pytables-users
Re: [Pytables-users] PyTables broke in Ubuntu 12.10
Hi Jason, Il 26/10/2012 21:59, Jason Moore ha scritto: Solution was simple once I found it. Here is the workaround: https://bugs.launchpad.net/ubuntu/+source/octave/+bug/1005243 Just make a symlink to the new file. Jason Honestly I don't think it is a good idea. ciao -- Antonio Valentino -- WINDOWS 8 is here. Millions of people. Your app in 30 days. Visit The Windows 8 Center at Sourceforge for all your go to resources. http://windows8center.sourceforge.net/ join-generation-app-and-make-money-coding-fast/ ___ Pytables-users mailing list Pytables-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/pytables-users
Re: [Pytables-users] PyTables broke in Ubuntu 12.10
I just tried installing python-tables on a clean install of 12.10 on a different machine and all went fine. So I've got something corrupted on my machine...just a localized bug. Jason On Fri, Oct 26, 2012 at 2:40 PM, Jason Moore moorepa...@gmail.com wrote: I've posted a bug report here: https://bugs.launchpad.net/ubuntu/+source/pytables/+bug/1071918 Maybe others could see if it is reproducible in Ubuntu 12.10. Thanks, Jason On Fri, Oct 26, 2012 at 2:09 PM, Jason Moore moorepa...@gmail.com wrote: The simlink is a workaround for Ubuntu 12.10. It is certainly not the long term solution, but I don't see why it is a bad idea. python-tables in the Ubuntu 12.10 repos cannot find the HDF5 library because it is looking for libhdf5.so.6 on the path but there is only libhdf5.so.7 (which is a simlink to libhdf5.so.7.0.2). This must be hard coded in the utilsExtensions.so binary that is include with PyTables. Seems like that these need to be recompiled for the distribution or something. Jason On Fri, Oct 26, 2012 at 1:12 PM, Antonio Valentino antonio.valent...@tiscali.it wrote: Hi Jason, Il 26/10/2012 21:59, Jason Moore ha scritto: Solution was simple once I found it. Here is the workaround: https://bugs.launchpad.net/ubuntu/+source/octave/+bug/1005243 Just make a symlink to the new file. Jason Honestly I don't think it is a good idea. ciao -- Antonio Valentino -- WINDOWS 8 is here. Millions of people. Your app in 30 days. Visit The Windows 8 Center at Sourceforge for all your go to resources. http://windows8center.sourceforge.net/ join-generation-app-and-make-money-coding-fast/ ___ Pytables-users mailing list Pytables-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/pytables-users -- Personal Website http://biosport.ucdavis.edu/lab-members/jason-moore Davis Bike Collective http://www.davisbikecollective.org Minister, Davis, CA BikeDavis.info Google Voice: +01 530-601-9791 Home: +01 530-753-0794 -- Personal Website http://biosport.ucdavis.edu/lab-members/jason-moore Davis Bike Collective http://www.davisbikecollective.org Minister, Davis, CA BikeDavis.info Google Voice: +01 530-601-9791 Home: +01 530-753-0794 -- Personal Website http://biosport.ucdavis.edu/lab-members/jason-moore Davis Bike Collective http://www.davisbikecollective.org Minister, Davis, CA BikeDavis.info Google Voice: +01 530-601-9791 Home: +01 530-753-0794 -- WINDOWS 8 is here. Millions of people. Your app in 30 days. Visit The Windows 8 Center at Sourceforge for all your go to resources. http://windows8center.sourceforge.net/ join-generation-app-and-make-money-coding-fast/___ Pytables-users mailing list Pytables-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/pytables-users
Re: [Pytables-users] PyTables broke in Ubuntu 12.10
Can you check to see if libhdf5.so is in your path? If not, you can add it to the path where it resides to your PATH variable. Hopefully, that helps. Aquil H. Abdullah On Oct 25, 2012, at 18:42, Jason Moore moorepa...@gmail.com wrote: I just updated to Ubuntu 12.10 and my pytables install is broken. I reinstalled and it seems like I have hdf5 1.8.4 installed but I get this error: moorepants@moorepants-LT:BicycleDataProcessor(master)$ vitables InstrumentedBicycleData.h5 Traceback (most recent call last): File /usr/bin/vitables, line 105, in module main(sys.argv) File /usr/bin/vitables, line 48, in main from vitables.vtapp import VTApp File /usr/share/vitables/vitables/vtapp.py, line 35, in module import tables File /usr/local/lib/python2.7/dist-packages/tables/__init__.py, line 30, in module from tables.utilsExtension import getPyTablesVersion, getHDF5Version ImportError: libhdf5.so.6: cannot open shared object file: No such file or directory What am I missing? Jason -- Personal Website http://biosport.ucdavis.edu/lab-members/jason-moore Davis Bike Collective http://www.davisbikecollective.org Minister, Davis, CA BikeDavis.info Google Voice: +01 530-601-9791 Home: +01 530-753-0794 -- Everyone hates slow websites. So do we. Make your web apps faster with AppDynamics Download AppDynamics Lite for free today: http://p.sf.net/sfu/appdyn_sfd2d_oct ___ Pytables-users mailing list Pytables-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/pytables-users -- Everyone hates slow websites. So do we. Make your web apps faster with AppDynamics Download AppDynamics Lite for free today: http://p.sf.net/sfu/appdyn_sfd2d_oct___ Pytables-users mailing list Pytables-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/pytables-users
Re: [Pytables-users] PyTables broke in Ubuntu 12.10
So it looks like python-tables in Ubuntu 12.10 requires libhdf5-7 and libhdf5-7 http://packages.ubuntu.com/quantal/amd64/libhdf5-7/filelist has /usr/lib/libhdf5.so.7 not libhdf5.so.6. Jason On Thu, Oct 25, 2012 at 4:10 PM, Aquil Abdullah aquil.abdul...@gmail.comwrote: Can you check to see if libhdf5.so is in your path? If not, you can add it to the path where it resides to your PATH variable. Hopefully, that helps. Aquil H. Abdullah On Oct 25, 2012, at 18:42, Jason Moore moorepa...@gmail.com wrote: I just updated to Ubuntu 12.10 and my pytables install is broken. I reinstalled and it seems like I have hdf5 1.8.4 installed but I get this error: moorepants@moorepants-LT:BicycleDataProcessor(master)$ vitables InstrumentedBicycleData.h5 Traceback (most recent call last): File /usr/bin/vitables, line 105, in module main(sys.argv) File /usr/bin/vitables, line 48, in main from vitables.vtapp import VTApp File /usr/share/vitables/vitables/vtapp.py, line 35, in module import tables File /usr/local/lib/python2.7/dist-packages/tables/__init__.py, line 30, in module from tables.utilsExtension import getPyTablesVersion, getHDF5Version ImportError: libhdf5.so.6: cannot open shared object file: No such file or directory What am I missing? Jason -- Personal Website http://biosport.ucdavis.edu/lab-members/jason-moore Davis Bike Collective http://www.davisbikecollective.org Minister, Davis, CA BikeDavis.info Google Voice: +01 530-601-9791 Home: +01 530-753-0794 -- Everyone hates slow websites. So do we. Make your web apps faster with AppDynamics Download AppDynamics Lite for free today: http://p.sf.net/sfu/appdyn_sfd2d_oct ___ Pytables-users mailing list Pytables-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/pytables-users -- Everyone hates slow websites. So do we. Make your web apps faster with AppDynamics Download AppDynamics Lite for free today: http://p.sf.net/sfu/appdyn_sfd2d_oct ___ Pytables-users mailing list Pytables-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/pytables-users -- Personal Website http://biosport.ucdavis.edu/lab-members/jason-moore Davis Bike Collective http://www.davisbikecollective.org Minister, Davis, CA BikeDavis.info Google Voice: +01 530-601-9791 Home: +01 530-753-0794 -- Everyone hates slow websites. So do we. Make your web apps faster with AppDynamics Download AppDynamics Lite for free today: http://p.sf.net/sfu/appdyn_sfd2d_oct___ Pytables-users mailing list Pytables-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/pytables-users
