Re: PSP problem showing images
Anybody of you have any idea? Alfons Nonell-Canals wrote: Hi Lawrence, Yes, I've tried it! I've saw the code, copyed the src path ans pasted into the browser and it works. I think it not works only unther a psp hostname/directory, for this reason I thought the problem is in the apache2 (site) configuration pasted in my mail... Thanks! Alfons. Lawrence D'Oliveiro wrote: In message mailman.2101.1256636602.2807.python-l...@python.org, Alfons Nonell-Canals wrote: I developed a script which generates some images (is a work about Chemistry) and returns a page with some results and these images. When I run the script from the web browser, all works fine: the images are created, some other staff is calculated and the final page with the results is fine except the images. It does not print the images! I chech the paths and all is fine. Did you view source to check the URLs in the “IMG SRC=...” directives? Did you try copying and pasting the image URLs directly into new windows/tabs, to see if they came up or you got an error page instead? -- Alfons Nonell-Canals, PhD Chemogenomics Lab Research Group on Biomedical Informatics (GRIB) - IMIM/UPF Barcelona Biomedical Research Park (PRBB) C/ Doctor Aiguader, 88 - 08003 Barcelona alfons.non...@upf.edu - http://cgl.imim.es Tel. +34933160528 http://alfons.elmeuportal.cat http://www.selenocisteina.info -- http://mail.python.org/mailman/listinfo/python-list
PSP problem showing images
Hello, I have experience working with Python an dnow I would like to use it for web development. I worked with php from several years ago and I'm trying to move to PSP. I have no problem runing some tests, implement an small project with psp is pretty easy. But I have only one problem, me scrips don't show any image. I developed a script which generates some images (is a work about Chemistry) and returns a page with some results and these images. When I run the script from the web browser, all works fine: the images are created, some other staff is calculated and the final page with the results is fine except the images. It does not print the images! I chech the paths and all is fine. With it I thought tha maybe there is something wrong in the apache's configuration. And I'm almost sure the problem is there because the Handler used only manages .psp documents. I add some code to not apply the Handler to .png but... help? Do you have any idea/experience? Below is the configuration of the host... VirtualHost *:80 ServerAdmin u...@domain.com ServerName www.domain.com ServerAlias domain.com # Indexes + Directory Root. DirectoryIndex index.psp DocumentRoot /path/to/the/pages Directory /path/to/the/pages AddHandler mod_python .psp PythonHandler mod_python.psp PythonDebug On FilesMatch \.(jpg|gif|png)$ Sethandler None /FilesMatch /Directory # Logfiles ErrorLog /var/log/apache2/domain.com-error.log CustomLog /var/log/apache2/domain.com-access.log combined /VirtualHost Thanks in advance! Regards, Alfons. -- Alfons Nonell-Canals, PhD Chemogenomics Lab Research Group on Biomedical Informatics (GRIB) - IMIM/UPF Barcelona Biomedical Research Park (PRBB) C/ Doctor Aiguader, 88 - 08003 Barcelona alfons.non...@upf.edu - http://cgl.imim.es Tel. +34933160528 http://alfons.elmeuportal.cat http://www.selenocisteina.info -- http://mail.python.org/mailman/listinfo/python-list
Re: PSP problem showing images
Hi Lawrence, Yes, I've tried it! I've saw the code, copyed the src path ans pasted into the browser and it works. I think it not works only unther a psp hostname/directory, for this reason I thought the problem is in the apache2 (site) configuration pasted in my mail... Thanks! Alfons. Lawrence D'Oliveiro wrote: In message mailman.2101.1256636602.2807.python-l...@python.org, Alfons Nonell-Canals wrote: I developed a script which generates some images (is a work about Chemistry) and returns a page with some results and these images. When I run the script from the web browser, all works fine: the images are created, some other staff is calculated and the final page with the results is fine except the images. It does not print the images! I chech the paths and all is fine. Did you view source to check the URLs in the “IMG SRC=...” directives? Did you try copying and pasting the image URLs directly into new windows/tabs, to see if they came up or you got an error page instead? -- Alfons Nonell-Canals, PhD Chemogenomics Lab Research Group on Biomedical Informatics (GRIB) - IMIM/UPF Barcelona Biomedical Research Park (PRBB) C/ Doctor Aiguader, 88 - 08003 Barcelona alfons.non...@upf.edu - http://cgl.imim.es Tel. +34933160528 http://alfons.elmeuportal.cat http://www.selenocisteina.info -- http://mail.python.org/mailman/listinfo/python-list
Combining sets/dictionaries
Hello, I have different sets/dictionaries/lists (whatever you want because I can convert them easily) and I would like to combine them. I don't want a consensus and something like it. I'd need to combine all elements of the first one with the all elements of the second one and third,... the numbers of dictionaries/sets/lists is variable as the number of elements for each one. For example, i have the following sets and I would like to obtain all possible combinations... ['I', 'O', 'N', 'P', 'S', 'C'] ['I', 'O', 'N', 'P', 'S', 'C'] ['I', 'O', 'N', 'P', 'S', 'C'] ['I', 'N', 'P', 'S', 'C'] ['I', 'N', 'P', 'S', 'C'] ['F', 'I', 'L', 'O', 'N', 'P', 'S', 'R', 'C'] ['I', 'O', 'N', 'P', 'S', 'C'] ['I', 'O', 'N', 'P', 'S', 'C'] ['F', 'I', 'L', 'O', 'N', 'P', 'S', 'R', 'C'] And it should be flexible because as I've said, the number of dictionaries/lists/sets is not always the same, as the number of elements. I don't like to ask this kid of questions but... today I'm totally lost and I need it to close one part of a nice project... Thanks in advance! Best regards, Alfons. -- Alfons Nonell-Canals, PhD Chemogenomics Lab Research Group on Biomedical Informatics (GRIB) - IMIM/UPF Barcelona Biomedical Research Park (PRBB) C/ Doctor Aiguader, 88 - 08003 Barcelona alfons.non...@upf.edu - http://cgl.imim.es Tel. +34933160528 http://alfons.elmeuportal.cat http://www.selenocisteina.info -- http://mail.python.org/mailman/listinfo/python-list
Re: Combining sets/dictionaries
Hello, finally I've solved it using a combinatorics library which allows to do this kind of things. Here, here is an example: http://automatthias.wordpress.com/2007/04/28/cartesian-product-of-multiple-sets/ Thanks for your suggestions. Regards, Alfons. Carl Banks wrote: On Sep 22, 3:08 am, Alfons Nonell-Canals alfons.non...@upf.edu wrote: Hello, I have different sets/dictionaries/lists (whatever you want because I can convert them easily) and I would like to combine them. I don't want a consensus and something like it. I'd need to combine all elements of the first one with the all elements of the second one and third,... the numbers of dictionaries/sets/lists is variable as the number of elements for each one. For example, i have the following sets and I would like to obtain all possible combinations... ['I', 'O', 'N', 'P', 'S', 'C'] ['I', 'O', 'N', 'P', 'S', 'C'] ['I', 'O', 'N', 'P', 'S', 'C'] ['I', 'N', 'P', 'S', 'C'] ['I', 'N', 'P', 'S', 'C'] ['F', 'I', 'L', 'O', 'N', 'P', 'S', 'R', 'C'] ['I', 'O', 'N', 'P', 'S', 'C'] ['I', 'O', 'N', 'P', 'S', 'C'] ['F', 'I', 'L', 'O', 'N', 'P', 'S', 'R', 'C'] This is the input. What do you want the output to look like given this input? I can't really tell exactly what you mean by all combinations, there are different ways to combine sequences, and it doesn't sound like you mean the formal mathematical definition of combination. My best guess is that you want something like this. def all_union(seqs): s = set() for seq in seqs: s.update(seq) return s Carl Banks -- Alfons Nonell-Canals, PhD Chemogenomics Lab Research Group on Biomedical Informatics (GRIB) - IMIM/UPF Barcelona Biomedical Research Park (PRBB) C/ Doctor Aiguader, 88 - 08003 Barcelona alfons.non...@upf.edu - http://cgl.imim.es Tel. +34933160528 http://alfons.elmeuportal.cat http://www.selenocisteina.info -- http://mail.python.org/mailman/listinfo/python-list
Integrating awk in Python
Hello, I'm developing a software package using python. I've programmed all necessary tools but I have to use other stuff from other people. Most of these external scripts are developed using awk. At the beggining I thought to translate them and program them in python but I prefer to avoid it because it means a lot of work and I should do it after each new version of this external stuff. I would like to integrate them into my python code. I know I can call them using the system environment but it is slower than if I call them inside the package. I know it is possible with C, do you have experience on integrate awk into python calling these awk scripts from python? Thanks in advance! Regards, Alfons. -- Alfons Nonell-Canals, PhD Chemogenomics Lab Research Group on Biomedical Informatics (GRIB) - IMIM/UPF Barcelona Biomedical Research Park (PRBB) C/ Doctor Aiguader, 88 - 08003 Barcelona alfons.non...@upf.edu - http://cgl.imim.es Tel. +34933160528 http://alfons.elmeuportal.cat http://www.selenocisteina.info -- http://mail.python.org/mailman/listinfo/python-list
Install modules with no root privilegies
Hello, Install python modules in a linux computer is really easy, it is because the module is a package of the distribution or because the python installation is really easy. But, in both situations, you need root privilegies. I would like to know how to install modules only for one user, with no root privilegies. Do you know if it is possible and easy. I would like to add that i need some modules only for my user and incly for one progam. Thanks in advance! Alfons. -- Alfons Nonell-Canals, PhD Chemogenomics Lab Research Group on Biomedical Informatics (GRIB) - IMIM/UPF Barcelona Biomedical Research Park (PRBB) C/ Doctor Aiguader, 88 - 08003 Barcelona [EMAIL PROTECTED] - http://cgl.imim.es Tel. +34933160528 http://alfons.elmeuportal.cat http://www.selenocisteina.info -- http://mail.python.org/mailman/listinfo/python-list
mySQL problems
Hello, I've developed a program using python that have to connect to a mysql server several times. In a local machine (running the program in the same machine where the mysql server is) I have no problems. I can run several instances of the program at the same time with no problem. Them problem arrives when I try to distribute the tasks to different machines, for example, in a cluster. In this situation, the machine that runs the python program is different than the machine that hosts the database. If I run the python program only an other machine, only one run of the program, there is no problem. But, If I run the program in different machines, all of them connecting to the same database server, randomly, it crash. Crash all running programs! at the same time. The output is clear: File /cgl/programs/ChemBang/config.py, line 67, in mysql db = MySQLdb.connect(host=HOST, user=USER, passwd=PASSWD,db=DATABASE) File /usr/local/lib/python2.5/site-packages/PIL/__init__.py, line 74, in Connect File build/bdist.linux-x86_64/egg/MySQLdb/connections.py, line 170, in __init__ _mysql_exceptions.OperationalError: (2003, Can't connect to MySQL server on 'HOST' (110)) It is clearly related with the connection to the mySQL server. As I said, it only happens when there are more than one programs running in different machines (or in the same) but conecting to a mysql server that is in an other machine. And... it is random, sometimes happens and sometimes no... Any idea? Thanks! Regards, Alfons. -- Alfons Nonell-Canals, PhD Chemogenomics Lab Research Group on Biomedical Informatics (GRIB) - IMIM/UPF Barcelona Biomedical Research Park (PRBB) C/ Doctor Aiguader, 88 - 08003 Barcelona [EMAIL PROTECTED] - http://cgl.imim.es Tel. +34933160528 http://alfons.elmeuportal.cat http://www.selenocisteina.info -- http://mail.python.org/mailman/listinfo/python-list
Re: mySQL problems
Hi, Maybe there is a certain connection limit which hits if your client programms reconnect in random order? I saw this on some PHP web sites. Probably some configuration adjustments and persistent connections could help you in this situation. I know I can check it but I am not the admin of the server where the mySQL server is and before to check it with the sysadmin I would like to discard other possibilities (they ask me to do this before) :-( Also, was the choice of MySQL a conscious one? Yes, the choice of MySQL is conscious because I have to manage huge amounts of data and I already have some experience in mySQL which makes it easier. Regards, Alfons. Regards Tino -- Alfons Nonell-Canals, PhD Chemogenomics Lab Research Group on Biomedical Informatics (GRIB) - IMIM/UPF Barcelona Biomedical Research Park (PRBB) C/ Doctor Aiguader, 88 - 08003 Barcelona [EMAIL PROTECTED] - http://cgl.imim.es Tel. +34933160528 http://alfons.elmeuportal.cat http://www.selenocisteina.info -- http://mail.python.org/mailman/listinfo/python-list
Idenfity numbers in variables
Hello, I have a trouble and I don't know how to solve it. I am working with molecules and each molecule has a number of atoms. I obtain each atom spliting the molecule. Ok. It is fine and I have no problem with it. The problem is when I have to work with these atoms. These atoms usually are only a letter but, sometimes it can also contain one o more numbers. If they contein a number I have to manipulate them separately. If the number was allways the same I know how to identify them, for example, 1: atom = 'C1' if '1' in atom: print 'kk' But, how can I do to identify in '1' all possibilities from 1-9, I tried: if '[1-9]', \d,... Any comments, please? Regards, Alfons. -- Alfons Nonell-Canals, PhD Chemogenomics Lab Research Group on Biomedical Informatics (GRIB) - IMIM/UPF Parc de Recerca Biomèdica de Barcelona (PRBB) C/ Doctor Aiguader, 88 - 08003 Barcelona [EMAIL PROTECTED] - http://cgl.imim.es http://alfons.elmeuportal.cat http://www.selenocisteina.info -- http://mail.python.org/mailman/listinfo/python-list
Generate documentation for a Python developed software
Dear all, I have a complex program developed using Python. It contains lot of files and classes. Now I have the lazy task to documentate it. I have some notes about is class but I would like to know if there is something to auto-generate the doucmentation with the program code. I know I will have to explain each class and variable but, if an external software canprepare it, the template, it will be great! Thanks in advance! Regards, -- Alfons Nonell-Canals Chemogenomics Lab Research Group on Biomedical Informatics (GRIB) - IMIM/UPF Parc de Recerca Biomèdica de Barcelona (PRBB) C/ Doctor Aiguader, 88 - 08003 Barcelona [EMAIL PROTECTED] - http://cgl.imim.es http://alfons.elmeuportal.cat http://www.selenocisteina.info -- http://mail.python.org/mailman/listinfo/python-list
