[Rd] Installing dependent packages
Hi all, When installing ggplot2 on with install.packages(ggplot2, dep = T), the colorspace dependency doesn't get installed (see below for transcript from R session). The relevant lines from my description file are: Depends: R (= 2.4), grid, reshape (= 0.8.0), proto, splines, MASS, RColorBrewer, colorspace Suggests: quantreg, Hmisc, mapproj, maps Have I done something wrong? Or is this a bug in the installation of dependent packages? Thanks, Hadley install.packages(ggplot2, dep = T) also installing the dependencies 'XML', 'RBGL', 'graph', 'chron', 'acepack', 'proto', 'Hmisc' trying URL ' http://cran.uk.r-project.org/bin/macosx/universal/contrib/2.5/XML_1.9-0.tgz' Content type 'application/x-gzip' length 1108754 bytes opened URL == downloaded 1082Kb trying URL 'http://cran.uk.r-project.org/bin/macosx/universal/contrib/2.5/RBGL_1.12.0.tgz ' Content type 'application/x-gzip' length 4577430 bytes opened URL == downloaded 4470Kb trying URL ' http://cran.uk.r-project.org/bin/macosx/universal/contrib/2.5/graph_1.14.2.tgz' Content type 'application/x-gzip' length 494951 bytes opened URL == downloaded 483Kb trying URL 'http://cran.uk.r-project.org/bin/macosx/universal/contrib/2.5/chron_2.3-14.tgz' Content type 'application/x-gzip' length 72595 bytes opened URL == downloaded 70Kb trying URL 'http://cran.uk.r-project.org/bin/macosx/universal/contrib/2.5/acepack_1.3-2.2.tgz ' Content type 'application/x-gzip' length 67871 bytes opened URL == downloaded 66Kb trying URL ' http://cran.uk.r-project.org/bin/macosx/universal/contrib/2.5/proto_0.3-7.tgz' Content type 'application/x-gzip' length 958493 bytes opened URL == downloaded 936Kb trying URL 'http://cran.uk.r-project.org/bin/macosx/universal/contrib/2.5/Hmisc_3.4-2.tgz' Content type 'application/x-gzip' length 1475177 bytes opened URL == downloaded 1440Kb trying URL 'http://cran.uk.r-project.org/bin/macosx/universal/contrib/2.5/ggplot2_0.5.4.tgz ' Content type 'application/x-gzip' length 1928720 bytes opened URL == downloaded 1883Kb The downloaded packages are in /tmp/RtmpWRuZcd/downloaded_packages Warning message: dependency 'Rgraphviz' is not available library(ggplot2) Loading required package: proto Loading required package: splines Loading required package: MASS Loading required package: colorspace Error: package 'colorspace' could not be loaded In addition: Warning message: there is no package called 'colorspace' in: library(pkg, character.only = TRUE, logical = TRUE, lib.loc = lib.loc) -- http://had.co.nz/ __ R-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-devel
Re: [Rd] Installing dependent packages
On Sun, 19 Aug 2007, hadley wickham wrote: Hi all, When installing ggplot2 on with install.packages(ggplot2, dep = T), the colorspace dependency doesn't get installed (see below for transcript from R session). The relevant lines from my description file are: Depends: R (= 2.4), grid, reshape (= 0.8.0), proto, splines, MASS, RColorBrewer, colorspace Suggests: quantreg, Hmisc, mapproj, maps Have I done something wrong? Or is this a bug in the installation of dependent packages? You need to start continuation lines with whitespace, but possibly your mailer wrapped this. (For readability I would wrap it in the DESCRIPTION file.) I tried in a vanilla session on Linux and colorspace was installed. Was this a vanilla session? Does it work with type=source? It would be helpful if you could debug this as probably no one else can: the code has been in use for a long time without any reported problems. Thanks, Hadley install.packages(ggplot2, dep = T) also installing the dependencies 'XML', 'RBGL', 'graph', 'chron', 'acepack', 'proto', 'Hmisc' trying URL ' http://cran.uk.r-project.org/bin/macosx/universal/contrib/2.5/XML_1.9-0.tgz' Content type 'application/x-gzip' length 1108754 bytes opened URL == downloaded 1082Kb trying URL 'http://cran.uk.r-project.org/bin/macosx/universal/contrib/2.5/RBGL_1.12.0.tgz ' Content type 'application/x-gzip' length 4577430 bytes opened URL == downloaded 4470Kb trying URL ' http://cran.uk.r-project.org/bin/macosx/universal/contrib/2.5/graph_1.14.2.tgz' Content type 'application/x-gzip' length 494951 bytes opened URL == downloaded 483Kb trying URL 'http://cran.uk.r-project.org/bin/macosx/universal/contrib/2.5/chron_2.3-14.tgz' Content type 'application/x-gzip' length 72595 bytes opened URL == downloaded 70Kb trying URL 'http://cran.uk.r-project.org/bin/macosx/universal/contrib/2.5/acepack_1.3-2.2.tgz ' Content type 'application/x-gzip' length 67871 bytes opened URL == downloaded 66Kb trying URL ' http://cran.uk.r-project.org/bin/macosx/universal/contrib/2.5/proto_0.3-7.tgz' Content type 'application/x-gzip' length 958493 bytes opened URL == downloaded 936Kb trying URL 'http://cran.uk.r-project.org/bin/macosx/universal/contrib/2.5/Hmisc_3.4-2.tgz' Content type 'application/x-gzip' length 1475177 bytes opened URL == downloaded 1440Kb trying URL 'http://cran.uk.r-project.org/bin/macosx/universal/contrib/2.5/ggplot2_0.5.4.tgz ' Content type 'application/x-gzip' length 1928720 bytes opened URL == downloaded 1883Kb The downloaded packages are in /tmp/RtmpWRuZcd/downloaded_packages Warning message: dependency 'Rgraphviz' is not available library(ggplot2) Loading required package: proto Loading required package: splines Loading required package: MASS Loading required package: colorspace Error: package 'colorspace' could not be loaded In addition: Warning message: there is no package called 'colorspace' in: library(pkg, character.only = TRUE, logical = TRUE, lib.loc = lib.loc) -- Brian D. Ripley, [EMAIL PROTECTED] Professor of Applied Statistics, http://www.stats.ox.ac.uk/~ripley/ University of Oxford, Tel: +44 1865 272861 (self) 1 South Parks Road, +44 1865 272866 (PA) Oxford OX1 3TG, UKFax: +44 1865 272595 __ R-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-devel
Re: [Rd] Installing dependent packages
On 19/08/2007 2:00 PM, hadley wickham wrote: Hi all, When installing ggplot2 on with install.packages(ggplot2, dep = T), the colorspace dependency doesn't get installed (see below for transcript from R session). The relevant lines from my description file are: Depends: R (= 2.4), grid, reshape (= 0.8.0), proto, splines, MASS, RColorBrewer, colorspace Suggests: quantreg, Hmisc, mapproj, maps Have I done something wrong? Or is this a bug in the installation of dependent packages? I see the same problem in MacOSX, but not in Windows. If I try it with none of the dependencies installed, only reshape and proto are added but there's a warning about grid, splines and MASS, so I'd guess this is a bug related to the fact that RColorBrewer and colorspace are on the second line, and there's another bug related to the fact that the others are recommended packages. Duncan Murdoch Thanks, Hadley install.packages(ggplot2, dep = T) also installing the dependencies 'XML', 'RBGL', 'graph', 'chron', 'acepack', 'proto', 'Hmisc' trying URL ' http://cran.uk.r-project.org/bin/macosx/universal/contrib/2.5/XML_1.9-0.tgz' Content type 'application/x-gzip' length 1108754 bytes opened URL == downloaded 1082Kb trying URL 'http://cran.uk.r-project.org/bin/macosx/universal/contrib/2.5/RBGL_1.12.0.tgz ' Content type 'application/x-gzip' length 4577430 bytes opened URL == downloaded 4470Kb trying URL ' http://cran.uk.r-project.org/bin/macosx/universal/contrib/2.5/graph_1.14.2.tgz' Content type 'application/x-gzip' length 494951 bytes opened URL == downloaded 483Kb trying URL 'http://cran.uk.r-project.org/bin/macosx/universal/contrib/2.5/chron_2.3-14.tgz' Content type 'application/x-gzip' length 72595 bytes opened URL == downloaded 70Kb trying URL 'http://cran.uk.r-project.org/bin/macosx/universal/contrib/2.5/acepack_1.3-2.2.tgz ' Content type 'application/x-gzip' length 67871 bytes opened URL == downloaded 66Kb trying URL ' http://cran.uk.r-project.org/bin/macosx/universal/contrib/2.5/proto_0.3-7.tgz' Content type 'application/x-gzip' length 958493 bytes opened URL == downloaded 936Kb trying URL 'http://cran.uk.r-project.org/bin/macosx/universal/contrib/2.5/Hmisc_3.4-2.tgz' Content type 'application/x-gzip' length 1475177 bytes opened URL == downloaded 1440Kb trying URL 'http://cran.uk.r-project.org/bin/macosx/universal/contrib/2.5/ggplot2_0.5.4.tgz ' Content type 'application/x-gzip' length 1928720 bytes opened URL == downloaded 1883Kb The downloaded packages are in /tmp/RtmpWRuZcd/downloaded_packages Warning message: dependency 'Rgraphviz' is not available library(ggplot2) Loading required package: proto Loading required package: splines Loading required package: MASS Loading required package: colorspace Error: package 'colorspace' could not be loaded In addition: Warning message: there is no package called 'colorspace' in: library(pkg, character.only = TRUE, logical = TRUE, lib.loc = lib.loc) __ R-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-devel
Re: [Rd] Installing dependent packages
On 19/08/2007 2:35 PM, Prof Brian Ripley wrote: On Sun, 19 Aug 2007, hadley wickham wrote: Hi all, When installing ggplot2 on with install.packages(ggplot2, dep = T), the colorspace dependency doesn't get installed (see below for transcript from R session). The relevant lines from my description file are: Depends: R (= 2.4), grid, reshape (= 0.8.0), proto, splines, MASS, RColorBrewer, colorspace Suggests: quantreg, Hmisc, mapproj, maps Have I done something wrong? Or is this a bug in the installation of dependent packages? You need to start continuation lines with whitespace, but possibly your mailer wrapped this. (For readability I would wrap it in the DESCRIPTION file.) I tried in a vanilla session on Linux and colorspace was installed. Was this a vanilla session? Does it work with type=source? It would be helpful if you could debug this as probably no one else can: the code has been in use for a long time without any reported problems. It seems to be a problem with CRAN: available.packages(http://cran.r-project.org/bin/macosx/universal/contrib/2.5;)[ggplot2,Depends] [1] R (= 2.4), grid, reshape (= 0.8.0), proto, splines, MASS, available.packages(http://cran.r-project.org/bin/windows/contrib/2.5;)[ggplot2,Depends] [1] R (= 2.4), grid, reshape (= 0.8.0), proto, splines, MASS,\nRColorBrewer, colorspace Duncan Murdoch Thanks, Hadley install.packages(ggplot2, dep = T) also installing the dependencies 'XML', 'RBGL', 'graph', 'chron', 'acepack', 'proto', 'Hmisc' trying URL ' http://cran.uk.r-project.org/bin/macosx/universal/contrib/2.5/XML_1.9-0.tgz' Content type 'application/x-gzip' length 1108754 bytes opened URL == downloaded 1082Kb trying URL 'http://cran.uk.r-project.org/bin/macosx/universal/contrib/2.5/RBGL_1.12.0.tgz ' Content type 'application/x-gzip' length 4577430 bytes opened URL == downloaded 4470Kb trying URL ' http://cran.uk.r-project.org/bin/macosx/universal/contrib/2.5/graph_1.14.2.tgz' Content type 'application/x-gzip' length 494951 bytes opened URL == downloaded 483Kb trying URL 'http://cran.uk.r-project.org/bin/macosx/universal/contrib/2.5/chron_2.3-14.tgz' Content type 'application/x-gzip' length 72595 bytes opened URL == downloaded 70Kb trying URL 'http://cran.uk.r-project.org/bin/macosx/universal/contrib/2.5/acepack_1.3-2.2.tgz ' Content type 'application/x-gzip' length 67871 bytes opened URL == downloaded 66Kb trying URL ' http://cran.uk.r-project.org/bin/macosx/universal/contrib/2.5/proto_0.3-7.tgz' Content type 'application/x-gzip' length 958493 bytes opened URL == downloaded 936Kb trying URL 'http://cran.uk.r-project.org/bin/macosx/universal/contrib/2.5/Hmisc_3.4-2.tgz' Content type 'application/x-gzip' length 1475177 bytes opened URL == downloaded 1440Kb trying URL 'http://cran.uk.r-project.org/bin/macosx/universal/contrib/2.5/ggplot2_0.5.4.tgz ' Content type 'application/x-gzip' length 1928720 bytes opened URL == downloaded 1883Kb The downloaded packages are in /tmp/RtmpWRuZcd/downloaded_packages Warning message: dependency 'Rgraphviz' is not available library(ggplot2) Loading required package: proto Loading required package: splines Loading required package: MASS Loading required package: colorspace Error: package 'colorspace' could not be loaded In addition: Warning message: there is no package called 'colorspace' in: library(pkg, character.only = TRUE, logical = TRUE, lib.loc = lib.loc) __ R-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-devel
