Re: [Rd] Building R-patched and R-devel fails
On 17.04.2016 11:01, Prof Brian Ripley wrote: On 17/04/2016 07:25, Berwin A Turlach wrote: G'day all, probably you have noticed this by now, but I thought I ought to report it. :) Already fixed for Unix by the time this reached me. Since that version of Survival has been put into 3.2 patched, that also needed its Makefile.in updated. I've left Windows changes to those with a Windows build system. Done for R-devel and the 3.3 branch just in case something happens on other machines. At least on my machine the build happened in an appropriate order anyway. Best, Uwe My scripts that update the SVN sources for R-patched and R-devel, run `tools/rsync-recommended' (for both) and then install both these versions from scratch failed this morning. Apparently the new version of the recommended package `survival' depends on the recommended package `Matrix', but the makefile does not ensure that Matrix is build before survival. So my log files had entries: [...] ERROR: dependency ‘Matrix’ is not available for package ‘survival’ * removing ‘/opt/src/R-devel-build/library/survival’ Makefile:51: recipe for target 'survival.ts' failed make[2]: *** [survival.ts] Error 1 make[2]: *** Waiting for unfinished jobs [...] Presumably, in both branches, the files Makefile.in and Makefile.win in src/library/Recommended have to be adapted to contain the following line at the end among the "Hardcoded dependencies": survival.ts: Matrix.ts Cheers, Berwin __ R-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-devel __ R-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-devel
[Rd] residual standard "error"
I see that the sigma() function has recently been introduced into R 3.3. The help for sigma() says: Extract the estimated standard deviation of the errors, the “residual standard deviation” (misnomed also “residual standard error”, e.g., in summary.lm()'s output, from a fitted model. Is there any reason not to fix the mis-naming of residual standard error now too? Both functions are in the stats package. It seems odd for one function in the package to point out an issue with another, especially when fixing it would only affect displayed output and not the rest of the API. My apologies if this has been suggested before, but a search through the archives didn’t locate the discussion. Also, there is a missing paren in the sentenced quoted from the help for sigma(). —rjp [[alternative HTML version deleted]] __ R-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-devel
Re: [Rd] Building R-patched and R-devel fails
On 17/04/2016 07:25, Berwin A Turlach wrote: G'day all, probably you have noticed this by now, but I thought I ought to report it. :) Already fixed for Unix by the time this reached me. Since that version of Survival has been put into 3.2 patched, that also needed its Makefile.in updated. I've left Windows changes to those with a Windows build system. My scripts that update the SVN sources for R-patched and R-devel, run `tools/rsync-recommended' (for both) and then install both these versions from scratch failed this morning. Apparently the new version of the recommended package `survival' depends on the recommended package `Matrix', but the makefile does not ensure that Matrix is build before survival. So my log files had entries: [...] ERROR: dependency ‘Matrix’ is not available for package ‘survival’ * removing ‘/opt/src/R-devel-build/library/survival’ Makefile:51: recipe for target 'survival.ts' failed make[2]: *** [survival.ts] Error 1 make[2]: *** Waiting for unfinished jobs [...] Presumably, in both branches, the files Makefile.in and Makefile.win in src/library/Recommended have to be adapted to contain the following line at the end among the "Hardcoded dependencies": survival.ts: Matrix.ts Cheers, Berwin __ R-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-devel -- Brian D. Ripley, rip...@stats.ox.ac.uk Emeritus Professor of Applied Statistics, University of Oxford __ R-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-devel
[Rd] Building R-patched and R-devel fails
G'day all, probably you have noticed this by now, but I thought I ought to report it. :) My scripts that update the SVN sources for R-patched and R-devel, run `tools/rsync-recommended' (for both) and then install both these versions from scratch failed this morning. Apparently the new version of the recommended package `survival' depends on the recommended package `Matrix', but the makefile does not ensure that Matrix is build before survival. So my log files had entries: [...] ERROR: dependency ‘Matrix’ is not available for package ‘survival’ * removing ‘/opt/src/R-devel-build/library/survival’ Makefile:51: recipe for target 'survival.ts' failed make[2]: *** [survival.ts] Error 1 make[2]: *** Waiting for unfinished jobs [...] Presumably, in both branches, the files Makefile.in and Makefile.win in src/library/Recommended have to be adapted to contain the following line at the end among the "Hardcoded dependencies": survival.ts: Matrix.ts Cheers, Berwin __ R-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-devel
