subject:"\[Rd\] \{splines\} package gone missing\?"

Re: [Rd] {splines} package gone missing?

2021-05-21 Thread Randall Pruim

Thanks everyone.

We are already back up and running.  We just did a redo of the install and 
started from scratch.  Actually, not quite from scratch since the packages in 
/usr/local that I had updated were not harmed.

I’m guessing this was all a side effect of an attempt to clean up from someone 
previously having installed contributed packages in amongst the base packages.  
I’m guess splines got caught in the dragnet when cleaning up the mess.

—rjp

> On May 21, 2021, at 1:07 PM, Dirk Eddelbuettel  wrote:
> 
> 
> Randall,
> 
> On 20 May 2021 at 07:12, Ben Bolker wrote:
> | splines is 'recommended' ( not sure about capitalization), not "base'
> 
> If you install 'r-base' rather than just the narrower 'r-base-core' you
> also get 'r-recommended'. So please do that, or just do
> 
>   sudo apt install r-recommended
> 
> The granularity offered is thought of as a feature even if it stares at you
> right now with very humongous insect eyes...
> 
> Dirk
> 
> -- 
> https://urldefense.proofpoint.com/v2/url?u=https-3A__dirk.eddelbuettel.com&d=DwICAg&c=4rZ6NPIETe-LE5i2KBR4rw&r=S6U-baLhvGcJ7iUQX_KZ6K2om1TTOeUI_-mjRpTrm00&m=l1obx7tzJNQb2j6J4_wfeDktT--xuNcUP2IrIfMN5go&s=PcRNlKxDRkHI7d0Wt3SK1T5PjhYO3YJMXiy0MsXJvXE&e=
>   | @eddelbuettel | e...@debian.org

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Re: [Rd] {splines} package gone missing?

2021-05-21 Thread Dirk Eddelbuettel



Randall,

On 20 May 2021 at 07:12, Ben Bolker wrote:
| splines is 'recommended' ( not sure about capitalization), not "base'

If you install 'r-base' rather than just the narrower 'r-base-core' you
also get 'r-recommended'. So please do that, or just do

   sudo apt install r-recommended

The granularity offered is thought of as a feature even if it stares at you
right now with very humongous insect eyes...

Dirk

-- 
https://dirk.eddelbuettel.com | @eddelbuettel | e...@debian.org

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Re: [Rd] {splines} package gone missing?

2021-05-20 Thread peter dalgaard

No, it really is base R, not Recommended:

Peters-MacBook-Air:BUILD pd$ ls ../R/src/library/Recommended/
KernSmooth.tgz  foreign.tgz
KernSmooth_2.23-20.tar.gz   foreign_0.8-81.tar.gz
MASS.tgzlattice.tgz
MASS_7.3-54.tar.gz  lattice_0.20-44.tar.gz
Makefile.in mgcv.tgz
Makefile.winmgcv_1.8-35.tar.gz
Matrix.tgz  nlme.tgz
Matrix_1.3-3.tar.gz nlme_3.1-152.tar.gz
boot.tgznnet.tgz
boot_1.3-28.tar.gz  nnet_7.3-16.tar.gz
class.tgz   rpart.tgz
class_7.3-19.tar.gz rpart_4.1-15.tar.gz
cluster.tgz spatial.tgz
cluster_2.1.2.tar.gzspatial_7.3-14.tar.gz
codetools.tgz   survival.tgz
codetools_0.2-18.tar.gz survival_3.2-11.tar.gz
Peters-MacBook-Air:BUILD pd$ ls ../R/src/library/
Makefile.in compilergridsplines tools
Makefile.windatasetsmethods stats   translations
Recommended grDevices   parallelstats4  utils
basegraphicsprofile tcltk
> row.names(installed.packages(priority = "base")) 
 [1] "base"  "compiler"  "datasets"  "graphics"  "grDevices" "grid" 
 [7] "methods"   "parallel"  "splines"   "stats" "stats4""tcltk"
[13] "tools" "utils"

'profile' is not an actual package, though.

- Peter


> On 20 May 2021, at 13:12 , Ben Bolker  wrote:
> 
> splines is 'recommended' ( not sure about capitalization), not "base'
> 
> On Thu, May 20, 2021, 7:02 AM Randall Pruim  wrote:
> Thanks.  I actually sort of checked for this:
> 
> 
> row.names(installed.packages(priority = "base"))
>  [1] "base"  "compiler"  "datasets"  "graphics"  "grDevices" "grid"  
> "methods"   "parallel"  "stats" "stats4""tcltk"
> [12] "tools" "utils"
> 
> But, of course, if the package is missing on my system (a newly installed 4.1 
> on an RStudio server), then it won’t be listed here.
> 
> I’ll have to figure out what went wrong with the install.  I’ll probably 
> start by having our sysadmin simply reinstall R 4.1 and hope that that takes 
> care of the problem.
> 
> Looks like profile is missing as well.
> 
> —rjp
> 
> On May 20, 2021, at 3:14 AM, peter dalgaard 
> mailto:pda...@gmail.com>> wrote:
> 
> It is part of base R, so comes with the R sources:
> 
> Peters-MacBook-Air:R pd$ ls src/library/
> Makefile.in   compiler/ grid/ splines/  tools/
> Makefile.win  datasets/ methods/  stats/
> translations/
> Recommended/  grDevices/parallel/ stats4/   utils/
> base/ graphics/ profile/  tcltk/
> 
> - pd
> 
> On 20 May 2021, at 06:02 , Randall Pruim 
> mailto:rpr...@calvin.edu>> wrote:
> 
> 
> https://urldefense.proofpoint.com/v2/url?u=https-3A__cran.r-2Dproject.org_web_packages_splines_index.html&d=DwIFaQ&c=4rZ6NPIETe-LE5i2KBR4rw&r=S6U-baLhvGcJ7iUQX_KZ6K2om1TTOeUI_-mjRpTrm00&m=GW4Zim0TvggrmjKt0HtW7il0NwJJaworM4-LL3H2FyI&s=69EYlZJd6di726T20ILKnX7f4GWM-VaUplRjNXfGolQ&e=
>   claims the the {splines} package has been archived.  If I follow the link 
> there to the archives, the newest version shown is from 1999.  It seems like 
> something has gone wrong with this package.
> 
> I checked on another mirror and {splines} is missing there as well.
> 
> —rjp
> 
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> 
> --
> Peter Dalgaard, Professor,
> Center for Statistics, Copenhagen Business School
> Solbjerg Plads 3, 2000 Frederiksberg, Denmark
> Phone: (+45)38153501
> Office: A 4.23
> Email: pd@cbs.dk  Priv: 
> pda...@gmail.com
> 
> 
> 
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> 
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-- 
Peter Dalgaard, Professor,
Center for Statistics, Copenhagen Business School
Solbjerg Plads 3, 2000 Frederiksberg, Denmark
Phone: (+45)38153501
Office: A 4.23
Email: pd@cbs.dk  Priv: pda...@gmail.com

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Re: [Rd] {splines} package gone missing?

2021-05-20 Thread Ben Bolker

splines is 'recommended' ( not sure about capitalization), not "base'

On Thu, May 20, 2021, 7:02 AM Randall Pruim  wrote:

> Thanks.  I actually sort of checked for this:
>
>
> row.names(installed.packages(priority = "base"))
>  [1] "base"  "compiler"  "datasets"  "graphics"  "grDevices" "grid"
>   "methods"   "parallel"  "stats" "stats4""tcltk"
> [12] "tools" "utils"
>
> But, of course, if the package is missing on my system (a newly installed
> 4.1 on an RStudio server), then it won’t be listed here.
>
> I’ll have to figure out what went wrong with the install.  I’ll probably
> start by having our sysadmin simply reinstall R 4.1 and hope that that
> takes care of the problem.
>
> Looks like profile is missing as well.
>
> —rjp
>
> On May 20, 2021, at 3:14 AM, peter dalgaard  pda...@gmail.com>> wrote:
>
> It is part of base R, so comes with the R sources:
>
> Peters-MacBook-Air:R pd$ ls src/library/
> Makefile.in   compiler/ grid/ splines/  tools/
> Makefile.win  datasets/ methods/  stats/
> translations/
> Recommended/  grDevices/parallel/ stats4/   utils/
> base/ graphics/ profile/  tcltk/
>
> - pd
>
> On 20 May 2021, at 06:02 , Randall Pruim  rpr...@calvin.edu>> wrote:
>
>
>
> https://urldefense.proofpoint.com/v2/url?u=https-3A__cran.r-2Dproject.org_web_packages_splines_index.html&d=DwIFaQ&c=4rZ6NPIETe-LE5i2KBR4rw&r=S6U-baLhvGcJ7iUQX_KZ6K2om1TTOeUI_-mjRpTrm00&m=GW4Zim0TvggrmjKt0HtW7il0NwJJaworM4-LL3H2FyI&s=69EYlZJd6di726T20ILKnX7f4GWM-VaUplRjNXfGolQ&e=
> claims the the {splines} package has been archived.  If I follow the link
> there to the archives, the newest version shown is from 1999.  It seems
> like something has gone wrong with this package.
>
> I checked on another mirror and {splines} is missing there as well.
>
> —rjp
>
> __
> R-devel@r-project.org mailing list
>
> https://urldefense.proofpoint.com/v2/url?u=https-3A__stat.ethz.ch_mailman_listinfo_r-2Ddevel&d=DwIFaQ&c=4rZ6NPIETe-LE5i2KBR4rw&r=S6U-baLhvGcJ7iUQX_KZ6K2om1TTOeUI_-mjRpTrm00&m=GW4Zim0TvggrmjKt0HtW7il0NwJJaworM4-LL3H2FyI&s=Jen0Ht23Vg-znRGxp8YPRc-qCbG0uLYGAyyECxU6kFg&e=
>
> --
> Peter Dalgaard, Professor,
> Center for Statistics, Copenhagen Business School
> Solbjerg Plads 3, 2000 Frederiksberg, Denmark
> Phone: (+45)38153501
> Office: A 4.23
> Email: pd@cbs.dk  Priv: pda...@gmail.com pda...@gmail.com>
>
>
>
> [[alternative HTML version deleted]]
>
> __
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> https://stat.ethz.ch/mailman/listinfo/r-devel
>

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Re: [Rd] {splines} package gone missing?

2021-05-20 Thread Randall Pruim

Thanks.  I actually sort of checked for this:


row.names(installed.packages(priority = "base"))
 [1] "base"  "compiler"  "datasets"  "graphics"  "grDevices" "grid"  
"methods"   "parallel"  "stats" "stats4""tcltk"
[12] "tools" "utils"

But, of course, if the package is missing on my system (a newly installed 4.1 
on an RStudio server), then it won’t be listed here.

I’ll have to figure out what went wrong with the install.  I’ll probably start 
by having our sysadmin simply reinstall R 4.1 and hope that that takes care of 
the problem.

Looks like profile is missing as well.

—rjp

On May 20, 2021, at 3:14 AM, peter dalgaard 
mailto:pda...@gmail.com>> wrote:

It is part of base R, so comes with the R sources:

Peters-MacBook-Air:R pd$ ls src/library/
Makefile.in   compiler/ grid/ splines/  tools/
Makefile.win  datasets/ methods/  stats/
translations/
Recommended/  grDevices/parallel/ stats4/   utils/
base/ graphics/ profile/  tcltk/

- pd

On 20 May 2021, at 06:02 , Randall Pruim 
mailto:rpr...@calvin.edu>> wrote:


https://urldefense.proofpoint.com/v2/url?u=https-3A__cran.r-2Dproject.org_web_packages_splines_index.html&d=DwIFaQ&c=4rZ6NPIETe-LE5i2KBR4rw&r=S6U-baLhvGcJ7iUQX_KZ6K2om1TTOeUI_-mjRpTrm00&m=GW4Zim0TvggrmjKt0HtW7il0NwJJaworM4-LL3H2FyI&s=69EYlZJd6di726T20ILKnX7f4GWM-VaUplRjNXfGolQ&e=
  claims the the {splines} package has been archived.  If I follow the link 
there to the archives, the newest version shown is from 1999.  It seems like 
something has gone wrong with this package.

I checked on another mirror and {splines} is missing there as well.

—rjp

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--
Peter Dalgaard, Professor,
Center for Statistics, Copenhagen Business School
Solbjerg Plads 3, 2000 Frederiksberg, Denmark
Phone: (+45)38153501
Office: A 4.23
Email: pd@cbs.dk  Priv: 
pda...@gmail.com



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Re: [Rd] {splines} package gone missing?

2021-05-20 Thread peter dalgaard

It is part of base R, so comes with the R sources:

Peters-MacBook-Air:R pd$ ls src/library/
Makefile.in   compiler/ grid/ splines/  tools/
Makefile.win  datasets/ methods/  stats/translations/
Recommended/  grDevices/parallel/ stats4/   utils/
base/ graphics/ profile/  tcltk/

- pd

> On 20 May 2021, at 06:02 , Randall Pruim  wrote:
> 
> 
> https://cran.r-project.org/web/packages/splines/index.html claims the the 
> {splines} package has been archived.  If I follow the link there to the 
> archives, the newest version shown is from 1999.  It seems like something has 
> gone wrong with this package.
> 
> I checked on another mirror and {splines} is missing there as well.
> 
> —rjp
> 
> __
> R-devel@r-project.org mailing list
> https://stat.ethz.ch/mailman/listinfo/r-devel

-- 
Peter Dalgaard, Professor,
Center for Statistics, Copenhagen Business School
Solbjerg Plads 3, 2000 Frederiksberg, Denmark
Phone: (+45)38153501
Office: A 4.23
Email: pd@cbs.dk  Priv: pda...@gmail.com

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[Rd] {splines} package gone missing?

2021-05-19 Thread Randall Pruim


https://cran.r-project.org/web/packages/splines/index.html claims the the 
{splines} package has been archived.  If I follow the link there to the 
archives, the newest version shown is from 1999.  It seems like something has 
gone wrong with this package.

I checked on another mirror and {splines} is missing there as well.

—rjp

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Re: [Rd] {splines} package gone missing?

Re: [Rd] {splines} package gone missing?

Re: [Rd] {splines} package gone missing?

Re: [Rd] {splines} package gone missing?

Re: [Rd] {splines} package gone missing?

Re: [Rd] {splines} package gone missing?

[Rd] {splines} package gone missing?

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