Re: [Rd] Intel MKL compiling issue

[Cohn, Robert S]

?  This helps -- would you be able to do with --enable-R-shlib? I also got 
complaints with it.

It works when I do this:
./configure --with-x=no --with-blas=-lmkl --enable-R-shlib




[[alternative HTML version deleted]]

__
R-devel@r-project.org mailing list
https://stat.ethz.ch/mailman/listinfo/r-devel

Re: [Rd] Intel MKL compiling issue

[Cohn, Robert S]

> I would appreciate any insights over compiling R 3.4 with Intel MKL -- I have 
> been successful until R 3.3.3 but now it stops complaining about pcre though 
> it worked without Intel MKL as follows,

I successfully built R-rc_2017-04-19_r72555.tar.gz with icc & MKL on centos 7 
with this:

# 
https://software.intel.com/en-us/articles/build-r-301-with-intel-c-compiler-and-intel-mkl-on-linux#
  
export ICC_OPT="-mkl -xHOST -fp-model strict"
export CC="icc $ICC_OPT"
export CXX="icpc $ICC_OPT"
export FC="ifort -mkl -xHOST"
export F77="ifort -mkl -xHOST"
export FPICFLAGS=" -fPIC"
export AR=xiar
export LD=xild
export MKL="-lmkl_gf_lp64 -lmkl_intel_thread  -lmkl_core -liomp5 -lpthread"
./configure --with-x=no --with-blas=-lmkl

__
R-devel@r-project.org mailing list
https://stat.ethz.ch/mailman/listinfo/r-devel

Re: [Rd] Intel MKL compiling issue

[Prof Brian Ripley]

There is nothing here indicating any kind of error, so no way to give 
any insights 


And please do follow the posting guide, including not posting HTML.

FWIW, I have tested R 3.4.0 RC (sic) with MKL 11.3, which is later than 
your 2013 ... (on x86_64 Fedora 24).



On 20/04/2017 10:39, jing hua zhao wrote:

Dear R-developers,


I would appreciate any insights over compiling R 3.4 with Intel MKL -- I have 
been successful until R 3.3.3 but now it stops complaining about pcre though it 
worked without Intel MKL as follows,


./configure LDFLAGS=-L/genetics/data/software/lib CFLAGS=-fPIC 
-I/genetics/data/software/include --enable-R-shlib


I have used,


export MKL_NUM_THREADS=15
export MKLROOT=/genetics/data/software/intel/composer_xe_2013.4.183/mkl
export LD_LIBRARY_PATH=$LD_LIBRARY_PATH:$MKLROOT/lib/intel64
/genetics/data/software/intel/composer_xe_2013.4.183/mkl/bin/mklvars.sh intel64
CPPFLAGS="-I/genetics/data/software/include -L/genetics/data/software/lib" \
./configure --prefix=/genetics/data/software --enable-R-shlib 
--enable-threads=posix --with-lapack \
 --with-blas="-fopenmp -m64 -I$MKLROOT/include -L$MKLROOT/lib/intel64 -lmkl_gf_lp64 
-lmkl_gnu_thread -lmkl_core -lpthread -lm"


Many thanks,



Jing Hua

[[alternative HTML version deleted]]

__
R-devel@r-project.org mailing list
https://stat.ethz.ch/mailman/listinfo/r-devel




--
Brian D. Ripley,  rip...@stats.ox.ac.uk
Emeritus Professor of Applied Statistics, University of Oxford

__
R-devel@r-project.org mailing list
https://stat.ethz.ch/mailman/listinfo/r-devel