Re: [Rd] R CMD check warnings on Windows

2018-08-14 Thread peter dalgaard
I don't think this has anything to do with Fortran.

The full warning message is presumably like

Warning: S3 methods . . . were declared in NAMESPACE but not found

which according to google-fu happens if you are declaring methods from a 
package that isn't loaded, in this case possibly dplyr. 

On previous occasions, this has happened due to race conditions so that one 
package is not completely  updated before another is installed, and that could 
well be the case if you see trouble on just the one platform, so maybe wait and 
see if the warning goes away. Otherwise, check for missing dependencies.



> On 14 Aug 2018, at 17:00 , Wang, Zhu  wrote:
> 
> Hi all,
> 
> For the R package bujar, the warnings below were generated on CRAN's Windows 
> systems. The package uses some Fortran subroutines. I would appreciate any 
> advice to eliminate the warnings. By the way, similar warnings were generated 
> to some unrelated R packages as well: 
> https://www.r-project.org/nosvn/R.check/r-oldrel-windows-ix86+x86_64/imputeTS-00check.html.
> 
> Thanks in advance.
> 
> Zhu Wang
> 
> https://www.r-project.org/nosvn/R.check/r-devel-windows-ix86+x86_64/bujar-00check.html
> 
> 
> * installing *source* package 'bujar' ...
> ** package 'bujar' successfully unpacked and MD5 sums checked
> ** R
> ** data
> ** inst
> ** byte-compile and prepare package for lazy loading
> Warning: S3 methods '[.fun_list', '[.grouped_df', 'all.equal.tbl_df', 
> 'anti_join.data.frame', 'anti_join.tbl_df', 'arrange.data.frame', 
> 'arrange.default', 'arrange.grouped_df', 'arrange.tbl_df', 
> 'arrange_.data.frame', 'arrange_.tbl_df', 'as.data.frame.grouped_df', 
> 'as.data.frame.rowwise_df', 'as.data.frame.tbl_cube', 'as.data.frame.tbl_df', 
> 'as.table.tbl_cube', 'as.tbl.data.frame', 'as.tbl.tbl', 'as.tbl_cube.array', 
> 'as.tbl_cube.data.frame', 'as.tbl_cube.matrix', 'as.tbl_cube.table', 
> 'as_data_frame.grouped_df', 'as_data_frame.tbl_cube', 'auto_copy.tbl_cube', 
> 'auto_copy.tbl_df', 'cbind.grouped_df', 'collapse.data.frame', 
> 'collect.data.frame', 'common_by.NULL', 'common_by.character', 
> 'common_by.default', 'common_by.list', 'compute.data.frame', 
> 'copy_to.DBIConnection', 'copy_to.src_local', 'default_missing.data.frame', 
> 'default_missing.default', 'dim.tbl_cube', 'distinct.data.frame', 
> 'distinct.default', 'distinct.grouped_df', 'distinct.tbl_df', 
> 'distinct_.data.frame', 'distinct_.grouped
> _df', 'dist [... truncated]
> ** help
> *** installing help indices
> ** building package indices
> ** installing vignettes
> ** testing if installed package can be loaded
> *** arch - i386
> Warning: S3 methods '[.fun_list', '[.grouped_df', 'all.equal.tbl_df', 
> 'anti_join.data.frame', 'anti_join.tbl_df', 'arrange.data.frame', 
> 'arrange.default', 'arrange.grouped_df', 'arrange.tbl_df', 
> 'arrange_.data.frame', 'arrange_.tbl_df', 'as.data.frame.grouped_df', 
> 'as.data.frame.rowwise_df', 'as.data.frame.tbl_cube', 'as.data.frame.tbl_df', 
> 'as.table.tbl_cube', 'as.tbl.data.frame', 'as.tbl.tbl', 'as.tbl_cube.array', 
> 'as.tbl_cube.data.frame', 'as.tbl_cube.matrix', 'as.tbl_cube.table', 
> 'as_data_frame.grouped_df', 'as_data_frame.tbl_cube', 'auto_copy.tbl_cube', 
> 'auto_copy.tbl_df', 'cbind.grouped_df', 'collapse.data.frame', 
> 'collect.data.frame', 'common_by.NULL', 'common_by.character', 
> 'common_by.default', 'common_by.list', 'compute.data.frame', 
> 'copy_to.DBIConnection', 'copy_to.src_local', 'default_missing.data.frame', 
> 'default_missing.default', 'dim.tbl_cube', 'distinct.data.frame', 
> 'distinct.default', 'distinct.grouped_df', 'distinct.tbl_df', 
> 'distinct_.data.frame', 'distinct_.grouped
> _df', 'dist [... truncated]
> *** arch - x64
> Warning: S3 methods '[.fun_list', '[.grouped_df', 'all.equal.tbl_df', 
> 'anti_join.data.frame', 'anti_join.tbl_df', 'arrange.data.frame', 
> 'arrange.default', 'arrange.grouped_df', 'arrange.tbl_df', 
> 'arrange_.data.frame', 'arrange_.tbl_df', 'as.data.frame.grouped_df', 
> 'as.data.frame.rowwise_df', 'as.data.frame.tbl_cube', 'as.data.frame.tbl_df', 
> 'as.table.tbl_cube', 'as.tbl.data.frame', 'as.tbl.tbl', 'as.tbl_cube.array', 
> 'as.tbl_cube.data.frame', 'as.tbl_cube.matrix', 'as.tbl_cube.table', 
> 'as_data_frame.grouped_df', 'as_data_frame.tbl_cube', 'auto_copy.tbl_cube', 
> 'auto_copy.tbl_df', 'cbind.grouped_df', 'collapse.data.frame', 
> 'collect.data.frame', 'common_by.NULL', 'common_by.character', 
> 'common_by.default', 'common_by.list', 'compute.data.frame', 
> 'copy_to.DBIConnection', 'copy_to.src_local', 'default_missing.data.frame', 
> 'default_missing.default', 'dim.tbl_cube', 'distinct.data.frame', 
> 'distinct.default', 'distinct.grouped_df', 'distinct.tbl_df', 
> 'distinct_.data.frame', 'distinct_.grouped
> _df', 'dist [... truncated]
> * MD5 sums
> packaged installation of 'bujar' as bujar_0.2-3.zip
> * DONE (bujar)
> In R CMD INSTALL
> 
> 
> **Connecticut Children's Confidentiality Notice**
> This e-mail message, including any attachments, is for...{{drop

[Rd] R CMD check warnings on Windows

2018-08-14 Thread Wang, Zhu
Hi all,

For the R package bujar, the warnings below were generated on CRAN's Windows 
systems. The package uses some Fortran subroutines. I would appreciate any 
advice to eliminate the warnings. By the way, similar warnings were generated 
to some unrelated R packages as well: 
https://www.r-project.org/nosvn/R.check/r-oldrel-windows-ix86+x86_64/imputeTS-00check.html.

Thanks in advance.

Zhu Wang

https://www.r-project.org/nosvn/R.check/r-devel-windows-ix86+x86_64/bujar-00check.html


* installing *source* package 'bujar' ...
** package 'bujar' successfully unpacked and MD5 sums checked
** R
** data
** inst
** byte-compile and prepare package for lazy loading
Warning: S3 methods '[.fun_list', '[.grouped_df', 'all.equal.tbl_df', 
'anti_join.data.frame', 'anti_join.tbl_df', 'arrange.data.frame', 
'arrange.default', 'arrange.grouped_df', 'arrange.tbl_df', 
'arrange_.data.frame', 'arrange_.tbl_df', 'as.data.frame.grouped_df', 
'as.data.frame.rowwise_df', 'as.data.frame.tbl_cube', 'as.data.frame.tbl_df', 
'as.table.tbl_cube', 'as.tbl.data.frame', 'as.tbl.tbl', 'as.tbl_cube.array', 
'as.tbl_cube.data.frame', 'as.tbl_cube.matrix', 'as.tbl_cube.table', 
'as_data_frame.grouped_df', 'as_data_frame.tbl_cube', 'auto_copy.tbl_cube', 
'auto_copy.tbl_df', 'cbind.grouped_df', 'collapse.data.frame', 
'collect.data.frame', 'common_by.NULL', 'common_by.character', 
'common_by.default', 'common_by.list', 'compute.data.frame', 
'copy_to.DBIConnection', 'copy_to.src_local', 'default_missing.data.frame', 
'default_missing.default', 'dim.tbl_cube', 'distinct.data.frame', 
'distinct.default', 'distinct.grouped_df', 'distinct.tbl_df', 
'distinct_.data.frame', 'distinct_.grouped
 _df', 'dist [... truncated]
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
*** arch - i386
Warning: S3 methods '[.fun_list', '[.grouped_df', 'all.equal.tbl_df', 
'anti_join.data.frame', 'anti_join.tbl_df', 'arrange.data.frame', 
'arrange.default', 'arrange.grouped_df', 'arrange.tbl_df', 
'arrange_.data.frame', 'arrange_.tbl_df', 'as.data.frame.grouped_df', 
'as.data.frame.rowwise_df', 'as.data.frame.tbl_cube', 'as.data.frame.tbl_df', 
'as.table.tbl_cube', 'as.tbl.data.frame', 'as.tbl.tbl', 'as.tbl_cube.array', 
'as.tbl_cube.data.frame', 'as.tbl_cube.matrix', 'as.tbl_cube.table', 
'as_data_frame.grouped_df', 'as_data_frame.tbl_cube', 'auto_copy.tbl_cube', 
'auto_copy.tbl_df', 'cbind.grouped_df', 'collapse.data.frame', 
'collect.data.frame', 'common_by.NULL', 'common_by.character', 
'common_by.default', 'common_by.list', 'compute.data.frame', 
'copy_to.DBIConnection', 'copy_to.src_local', 'default_missing.data.frame', 
'default_missing.default', 'dim.tbl_cube', 'distinct.data.frame', 
'distinct.default', 'distinct.grouped_df', 'distinct.tbl_df', 
'distinct_.data.frame', 'distinct_.grouped
 _df', 'dist [... truncated]
*** arch - x64
Warning: S3 methods '[.fun_list', '[.grouped_df', 'all.equal.tbl_df', 
'anti_join.data.frame', 'anti_join.tbl_df', 'arrange.data.frame', 
'arrange.default', 'arrange.grouped_df', 'arrange.tbl_df', 
'arrange_.data.frame', 'arrange_.tbl_df', 'as.data.frame.grouped_df', 
'as.data.frame.rowwise_df', 'as.data.frame.tbl_cube', 'as.data.frame.tbl_df', 
'as.table.tbl_cube', 'as.tbl.data.frame', 'as.tbl.tbl', 'as.tbl_cube.array', 
'as.tbl_cube.data.frame', 'as.tbl_cube.matrix', 'as.tbl_cube.table', 
'as_data_frame.grouped_df', 'as_data_frame.tbl_cube', 'auto_copy.tbl_cube', 
'auto_copy.tbl_df', 'cbind.grouped_df', 'collapse.data.frame', 
'collect.data.frame', 'common_by.NULL', 'common_by.character', 
'common_by.default', 'common_by.list', 'compute.data.frame', 
'copy_to.DBIConnection', 'copy_to.src_local', 'default_missing.data.frame', 
'default_missing.default', 'dim.tbl_cube', 'distinct.data.frame', 
'distinct.default', 'distinct.grouped_df', 'distinct.tbl_df', 
'distinct_.data.frame', 'distinct_.grouped
 _df', 'dist [... truncated]
* MD5 sums
packaged installation of 'bujar' as bujar_0.2-3.zip
* DONE (bujar)
In R CMD INSTALL


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