Re: [Rd] R + OS X + gcc 3.5 = not quite there ..
On Jul 31, 2004, at 9:15 PM, Jan de Leeuw wrote: [cabledoc70:Developer/R/R-devel] deleeuw% bin/R Error in lazyLoadDBfetch(key, datafile, compressed, envhook) : internal error in decompress1 I forgot to post it here, but the problem I had was in libz (thanks to Luke for some tips). When I used system's libz then the problems went away. I suspect the supplied libz is miscompiled in some way, however I had no time yet to track it down exactly. gfortran -fno-common -g -O2 -c ppr.f -o ppr.o /var/tmp//ccSqEJAf.s:8241:FATAL:Symbol __BLOCK_DATA already defined. Heh, I suspect it's the same code that my g77 cross-compiler hates, as I posed here few days ago ... got no response so far :/ and the bad restore file magic number errors are there as well. That's the libz thing: what happens is the following: first load opens the file as gzip, that should work, but for some reason it doesn't, so load falls back to raw mode and tries to read it as-is, however then the magic number is bogus since it's actually gzipped, so load fails. If you use system's libz the file is decompressed correctly. Cheers, Simon __ [EMAIL PROTECTED] mailing list https://www.stat.math.ethz.ch/mailman/listinfo/r-devel
[Rd] 3.5 on Tiger
setenv CC gcc-3.5 setenv F77 gfortran setenv CXX g++-3.5 What I had to do. 1. Build a local zlib-1.2.1 2. Compile ppr.f in stats with g77-3.4 and not with gfortran-3.5 3. Change line 1581 in plot.c to double *aa = REAL(cex); if (R_FINITE(aa[i % ncex]) i.e. get the assignment out of the macro 4. Disable the DO_STR_DIM macro in plot.c (and thus the functions do_strheight and do_strwidth). This could be fixed by expanding the macros and pasting into the source. __ [EMAIL PROTECTED] mailing list https://www.stat.math.ethz.ch/mailman/listinfo/r-devel
Re: [Rd] directing print.packageInfo to a file
Gabor Grothendieck writes:
There was a discussion on r-help of getting the output from
print.packageInfo into a file. Spencer and I have added a file=
argument to print.packageInfo for consideration in R. Had this
been available it would have simplified the answer to that
thread. If the file= argument is used then the packageInfo
information is sent to the file specified rather than displayed
using file.show .
What is wrong with
capture.output(print.packageInfo(x, ...), file = NULL)
for what you want?
-k
print.packageInfo - function (x, ..., file = NULL)
{
if (!inherits(x, packageInfo))
stop(wrong class)
outFile - if (is.null(file))
tempfile(RpackageInfo)
else
file
outConn - file(outFile, open = w)
vignetteMsg - paste(Further information is available in the following ,
vignettes in directory , sQuote(file.path(x$path, doc)),
:, sep = )
headers - c(, Description:\n\n, Index:\n\n, paste(paste(strwrap
(vignetteMsg),
collapse = \n), \n\n, sep = ))
footers - c(\n, \n, \n, )
formatDocEntry - function(entry) {
if (is.list(entry) || is.matrix(entry))
formatDL(entry, style = list)
else entry
}
for (i in which(!sapply(x$info, is.null))) {
writeLines(headers[i], outConn, sep = )
writeLines(formatDocEntry(x$info[[i]]), outConn)
writeLines(footers[i], outConn, sep = )
}
close(outConn)
if (is.null(file))
file.show(outFile, delete.file = TRUE, title = paste
(Documentation for package,
sQuote(x$name)))
invisible(x)
}
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Re: [Rd] directing print.packageInfo to a file
print.packageInfo does not print to the console, it uses file.show.
For example, on R 1.9.1 patched on Windows XP:
require(chron)
[1] TRUE
capture.output(print.packageInfo(help(package = chron)), file = /abc.txt)
NULL
length(readLines(/abc.txt))
[1] 0
Kurt Hornik [EMAIL PROTECTED] writes:
Gabor Grothendieck writes:
There was a discussion on r-help of getting the output from
print.packageInfo into a file. Spencer and I have added a file=
argument to print.packageInfo for consideration in R. Had this
been available it would have simplified the answer to that
thread. If the file= argument is used then the packageInfo
information is sent to the file specified rather than displayed
using file.show .
What is wrong with
capture.output(print.packageInfo(x, ...), file = NULL)
for what you want?
-k
print.packageInfo - function (x, ..., file = NULL)
{
if (!inherits(x, packageInfo))
stop(wrong class)
outFile - if (is.null(file))
tempfile(RpackageInfo)
else
file
outConn - file(outFile, open = w)
vignetteMsg - paste(Further information is available in the following ,
vignettes in directory , sQuote(file.path(x$path, doc)),
:, sep = )
headers - c(, Description:\n\n, Index:\n\n, paste(paste(strwrap
(vignetteMsg),
collapse = \n), \n\n, sep = ))
footers - c(\n, \n, \n, )
formatDocEntry - function(entry) {
if (is.list(entry) || is.matrix(entry))
formatDL(entry, style = list)
else entry
}
for (i in which(!sapply(x$info, is.null))) {
writeLines(headers[i], outConn, sep = )
writeLines(formatDocEntry(x$info[[i]]), outConn)
writeLines(footers[i], outConn, sep = )
}
close(outConn)
if (is.null(file))
file.show(outFile, delete.file = TRUE, title = paste
(Documentation for package,
sQuote(x$name)))
invisible(x)
}
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Re: [Rd] plot(x,y) core dump
Hi
Rf_allocNewX11DeviceDesc is called by newX11DeviceDriver and the latter
needs to check the value returned. I think Brian Ripley has made a fix
for this problem in the development version of R. The first few lines
of newX11DeviceDriver now look like ...
newX11Desc *xd;
char *fn;
xd = Rf_allocNewX11DeviceDesc(pointsize);
if(!xd) return FALSE;
Unfortunately, your next problem may be that you can't start an X11
device (it looks like you are failing to allocate memory for the device).
Paul
Liao, Kexiao wrote:
Dear R Development Team,
I compile R-1.9.1 on AIX 5.2 under 2.9-aix51-020209, and xlf 7.1. In
order to let R compile successfully under gcc 2.9, I have to change one
C statement of file(RHOME//src/modules/X11/devX11.c) line 1768 from
retrun FALSE to retrun NULL, following is C code snapshot:
newX11Desc * Rf_allocNewX11DeviceDesc(double ps)
{
newX11Desc *xd;
/* allocate new device description */
if (!(xd = (newX11Desc*)calloc(1, sizeof(newX11Desc
return NULL;
/* From here on, if we need to bail out with error, */
/* then we must also free(xd). */
/* Font will load at first use. */
if (ps 6 || ps 24) ps = 12;
xd-fontface = -1;
xd-fontsize = -1;
xd-basefontface = 1;
xd-basefontsize = ps;
xd-handleOwnEvents = FALSE;
xd-window = (Window) NULL;
return(xd);
}
However I got core dump while I try to use plot() from R:
R : Copyright 2004, The R Foundation for Statistical Computing
Version 1.9.1 (2004-06-21), ISBN 3-900051-00-3
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for a HTML browser interface to help.
Type 'q()' to quit R.
help.start()
Making links in per-session dir ...
If /usr/bin/netscape is already running, it is *not* restarted, and
you must switch to its window.
Otherwise, be patient ...
x - rnorm(50)
y - rnorm(x)
plot(x,y)
Illegal instruction (core dumped)
Can anyone give me some suggestion? Thanks!
Kexiao
[[alternative HTML version deleted]]
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--
Dr Paul Murrell
Department of Statistics
The University of Auckland
Private Bag 92019
Auckland
New Zealand
64 9 3737599 x85392
[EMAIL PROTECTED]
http://www.stat.auckland.ac.nz/~paul/
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Re: [Rd] directing print.packageInfo to a file
Gabor Grothendieck writes:
print.packageInfo does not print to the console, it uses file.show.
For example, on R 1.9.1 patched on Windows XP:
require(chron)
[1] TRUE
capture.output(print.packageInfo(help(package = chron)), file = /abc.txt)
NULL
length(readLines(/abc.txt))
[1] 0
But file.show() can be tuned by playing with options(pager).
In your case, something like
oop - options(pager = function(file, ...) writeLines(readLines(file)))
capture.output(print.packageInfo(help(package = stats)),
file = abc.txt)
options(oop)
gives
R length(readLines(abc.txt))
[1] 345
Hth
-k
Kurt Hornik [EMAIL PROTECTED] writes:
Gabor Grothendieck writes:
There was a discussion on r-help of getting the output from
print.packageInfo into a file. Spencer and I have added a file=
argument to print.packageInfo for consideration in R. Had this
been available it would have simplified the answer to that
thread. If the file= argument is used then the packageInfo
information is sent to the file specified rather than displayed
using file.show .
What is wrong with
capture.output(print.packageInfo(x, ...), file = NULL)
for what you want?
-k
print.packageInfo - function (x, ..., file = NULL)
{
if (!inherits(x, packageInfo))
stop(wrong class)
outFile - if (is.null(file))
tempfile(RpackageInfo)
else
file
outConn - file(outFile, open = w)
vignetteMsg - paste(Further information is available in the following ,
vignettes in directory , sQuote(file.path(x$path, doc)),
:, sep = )
headers - c(, Description:\n\n, Index:\n\n, paste(paste(strwrap
(vignetteMsg),
collapse = \n), \n\n, sep = ))
footers - c(\n, \n, \n, )
formatDocEntry - function(entry) {
if (is.list(entry) || is.matrix(entry))
formatDL(entry, style = list)
else entry
}
for (i in which(!sapply(x$info, is.null))) {
writeLines(headers[i], outConn, sep = )
writeLines(formatDocEntry(x$info[[i]]), outConn)
writeLines(footers[i], outConn, sep = )
}
close(outConn)
if (is.null(file))
file.show(outFile, delete.file = TRUE, title = paste
(Documentation for package,
sQuote(x$name)))
invisible(x)
}
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