[Rd] make check-all fails on R-devel 2005/03/07 (PR#7718)
Full_Name: Ed Borasky Version: R-devel 2005/03/07 OS: Gentoo Linux Submission from: (NULL) (24.21.54.168) How to reproduce: 1. Download R-devel.tar.bz2 (the one I have is 2005/03/07) 2. Unpack it 3. Type ./configure --prefix=/opt 21 | tee configure.log make 21 | tee make.log make check-all 21 | tee make-check-all.log running tests of LAPACK-based functions make[3]: Entering directory `/home/znmeb/R-devel/tests' running code in 'lapack.R' ... OK make[3]: Leaving directory `/home/znmeb/R-devel/tests' make[2]: Leaving directory `/home/znmeb/R-devel/tests' make[2]: Entering directory `/home/znmeb/R-devel/tests' running tests of NA handling functions make[3]: Entering directory `/home/znmeb/R-devel/tests' running code in 'nafns.R' ...make[3]: *** [nafns.Rout] Error 1 make[3]: Leaving directory `/home/znmeb/R-devel/tests' make[2]: *** [test-Nafns] Error 2 make[2]: Leaving directory `/home/znmeb/R-devel/tests' make[1]: *** [test-all-devel] Error 1 make[1]: Leaving directory `/home/znmeb/R-devel/tests' make: *** [check-all] Error 2 bash-2.05b$ I have the complete logs if you want them. This same sequence worked fine with R-patched dated 2005/03/07. The system is Gentoo Linux (gcc-3.3.5, glibc-2.3.4.20040808-r1, 2.6.10-gentoo-r7 i686) __ R-devel@stat.math.ethz.ch mailing list https://stat.ethz.ch/mailman/listinfo/r-devel
Re: [Rd] make check-all fails on R-devel 2005/03/07 (PR#7718)
What platform is this?: `Gentoo Linux' is too vague. Please investigate the failure and follow-up with the details (there should be a tests/nafns.Rout.fail file). NB: we are not seeing a problem on FC3 Linux under i686 or x86_64 or under Windows or Solaris. On Mon, 7 Mar 2005 [EMAIL PROTECTED] wrote: Full_Name: Ed Borasky Version: R-devel 2005/03/07 OS: Gentoo Linux Submission from: (NULL) (24.21.54.168) How to reproduce: 1. Download R-devel.tar.bz2 (the one I have is 2005/03/07) 2. Unpack it 3. Type ./configure --prefix=/opt 21 | tee configure.log make 21 | tee make.log make check-all 21 | tee make-check-all.log running tests of LAPACK-based functions make[3]: Entering directory `/home/znmeb/R-devel/tests' running code in 'lapack.R' ... OK make[3]: Leaving directory `/home/znmeb/R-devel/tests' make[2]: Leaving directory `/home/znmeb/R-devel/tests' make[2]: Entering directory `/home/znmeb/R-devel/tests' running tests of NA handling functions make[3]: Entering directory `/home/znmeb/R-devel/tests' running code in 'nafns.R' ...make[3]: *** [nafns.Rout] Error 1 make[3]: Leaving directory `/home/znmeb/R-devel/tests' make[2]: *** [test-Nafns] Error 2 make[2]: Leaving directory `/home/znmeb/R-devel/tests' make[1]: *** [test-all-devel] Error 1 make[1]: Leaving directory `/home/znmeb/R-devel/tests' make: *** [check-all] Error 2 bash-2.05b$ I have the complete logs if you want them. This same sequence worked fine with R-patched dated 2005/03/07. The system is Gentoo Linux (gcc-3.3.5, glibc-2.3.4.20040808-r1, 2.6.10-gentoo-r7 i686) __ R-devel@stat.math.ethz.ch mailing list https://stat.ethz.ch/mailman/listinfo/r-devel -- Brian D. Ripley, [EMAIL PROTECTED] Professor of Applied Statistics, http://www.stats.ox.ac.uk/~ripley/ University of Oxford, Tel: +44 1865 272861 (self) 1 South Parks Road, +44 1865 272866 (PA) Oxford OX1 3TG, UKFax: +44 1865 272595 __ R-devel@stat.math.ethz.ch mailing list https://stat.ethz.ch/mailman/listinfo/r-devel
Re: [Rd] R crashes using the em function of package mclust (PR#7719)
Please read the FAQ and report this in the correct place: Bug reports on contributed packages should be sent first to the package maintainer, and only submitted to the R-bugs repository by package maintainers, mentioning the package in the subject line. You are not the named maintainer. On Mon, 7 Mar 2005 [EMAIL PROTECTED] wrote: Hi, I got the same problem like http://tolstoy.newcastle.edu.au/R/devel/04/11/1204.html R crashes when I use the em function from the mclust package on univariate data and on a special case on bivariate data (when the matrix is not provided as written in the manual). It seems as if the problem is the format of the data to be analyzed. Operating System: Windows XP (SP2) R version: R-2.0.1 The following example causes a crash of R: # univariate example require(mclust) X - c(rnorm(100, mean=1), rnorm(100, mean=5)) # I also tried: X - as.matrix(c(rnorm(100, mean=1), rnorm(100, mean=5))) Xmap - cbind(c(rep(1, 100), rep(0, 100)), c(rep(0, 100), rep(1, 100))) Xm - mstep(modelName=V, data=X, z=Xmap) # CRASH: em(modelName=Xm$modelName, data=X, mu=Xm$mu, sigmasq=Xm$sigmasq, pro=Xm$pro) For bivariate data the following example works: # bivariate example require(mclust) Y - as.matrix(cbind(c(rnorm(100, mean=1), rnorm(100, mean=5)), c(rnorm(100, mean=1), rnorm(100, mean=5 Ymap - cbind(c(rep(1, 100), rep(0, 100)), c(rep(0, 100), rep(1, 100))) Ym - mstep(modelName=EEE, data=Y, z=Ymap) # NO CRASH: em(modelName=Ym$modelName, data=Y, mu=Ym$mu, sigmasq=Ym$Sigma, pro=Ym$pro) But when the variables are not columns (as written in the mclust manual) but rows, R crashes again: # CRASH: em(modelName=Ym$modelName, data=t(Y), mu=Ym$mu, sigmasq=Ym$Sigma, pro=Ym$pro) Perhaps this is a hint to the origin of the problem. I could not use the em function for univariate data successfully yet. Perhaps anyone can provide a working example for univariate data? Thanks in advance. __ R-devel@stat.math.ethz.ch mailing list https://stat.ethz.ch/mailman/listinfo/r-devel -- Brian D. Ripley, [EMAIL PROTECTED] Professor of Applied Statistics, http://www.stats.ox.ac.uk/~ripley/ University of Oxford, Tel: +44 1865 272861 (self) 1 South Parks Road, +44 1865 272866 (PA) Oxford OX1 3TG, UKFax: +44 1865 272595 __ R-devel@stat.math.ethz.ch mailing list https://stat.ethz.ch/mailman/listinfo/r-devel
Re: [Rd] R crashes using the em function of package mclust (PR#7719)
On Mon, 7 Mar 2005 09:35:39 +0100 (CET), [EMAIL PROTECTED] wrote : Hi, I got the same problem like http://tolstoy.newcastle.edu.au/R/devel/04/11/1204.html R crashes when I use the em function from the mclust package on univariate data and on a special case on bivariate data (when the matrix is not provided as written in the manual). It seems as if the problem is the format of the data to be analyzed. Operating System: Windows XP (SP2) R version: R-2.0.1 The following example causes a crash of R: # univariate example require(mclust) X - c(rnorm(100, mean=1), rnorm(100, mean=5)) # I also tried: X - as.matrix(c(rnorm(100, mean=1), rnorm(100, mean=5))) Xmap - cbind(c(rep(1, 100), rep(0, 100)), c(rep(0, 100), rep(1, 100))) Xm - mstep(modelName=V, data=X, z=Xmap) # CRASH: em(modelName=Xm$modelName, data=X, mu=Xm$mu, sigmasq=Xm$sigmasq, pro=Xm$pro) Which version of mclust? I just installed 2.1-8 and ran your code in R-2.0.1 with no problem. In any case, this looks more like an mclust problem than an R problem; if you're using the current version, you should follow up with the maintainer, Ron Wehrens [EMAIL PROTECTED]. Duncan Murdoch __ R-devel@stat.math.ethz.ch mailing list https://stat.ethz.ch/mailman/listinfo/r-devel
[Rd] Dear Friend. (PR#7720)
Dear Friend. As you read this, I don't want you to feel sorry for me, because, I believe everyone will die someday. My name is Shadak Shari, a merchant in Dubai, in the U.A.E.I have been diagnosed with Esophageal cancer .It has defiled all forms of medical treatment, and right now I have only about a few months to live, according to medical experts. I have not particularly lived my life so well, as I never really cared for anyone(not even myself)but my business. Though I am very rich, I was never generous, I was always hostile to people and only focused on my business as that was the only thing I cared for. But now I regret all this as I now know that there is more to life than just wanting to have or make all the money in the world. I believe when God gives me a second chance to come to this world I would live my life a different way from how I have lived it. Now that God has called me, I have willed and given most of my property and assets to my immediate and extended family members as well as a few close friends. I want God to be merciful to me and accept my soul so, I have decided to give alms to charity organizations, as I want this to be one of the last good deeds I do on earth. So far, I have distributed money to some charity organizations in the U.A.E, Algeria and Malaysia. Now that my health has deteriorated so badly, I cannot do this myself anymore. I once asked members of my family to close one of my accounts and distribute the money which I have there to charity organization in Bulgaria and Pakistan, they refused and kept the money to themselves. Hence, I do not trust them anymore, as they seem not to be contended with what I have left for them. The last of my money which no one knows of is the huge cash deposit of seven million dollars $7,000,000,that I have with a finance/Security Company abroad. I will want you to help me collect this deposit and dispatched it to charity organizations. I have set aside 10% for you for your time and patience.please send a reply through this email address([EMAIL PROTECTED]) with your full contact information for more private and confidential communication. God be with you. Shadak Shari -- DSL Komplett von GMX +++ Supergünstig und stressfrei einsteigen! AKTION Kein Einrichtungspreis nutzen: http://www.gmx.net/de/go/dsl __ R-devel@stat.math.ethz.ch mailing list https://stat.ethz.ch/mailman/listinfo/r-devel
[Rd] Does cat(\a) ring a bell?
Under GUIs other than Windows (Mac OS X, ESS, etc.) does cat(\a) still make a bell (or some other) sound? If so, I'll add a bell() function to utils. Duncan Murdoch __ R-devel@stat.math.ethz.ch mailing list https://stat.ethz.ch/mailman/listinfo/r-devel
Re: [Rd] Does cat(\a) ring a bell?
no, on Mac OS X, but could be easily implemented. stefano On 07/mar/05, at 21:02, Duncan Murdoch wrote: Under GUIs other than Windows (Mac OS X, ESS, etc.) does cat(\a) still make a bell (or some other) sound? If so, I'll add a bell() function to utils. Duncan Murdoch __ R-devel@stat.math.ethz.ch mailing list https://stat.ethz.ch/mailman/listinfo/r-devel __ R-devel@stat.math.ethz.ch mailing list https://stat.ethz.ch/mailman/listinfo/r-devel
RE: [Rd] Does cat(\a) ring a bell?
Not under ESS/Emacs/Linux : cat(\a) ^G -Original Message- From: [EMAIL PROTECTED] [mailto:[EMAIL PROTECTED] On Behalf Of Duncan Murdoch Sent: Monday, March 07, 2005 12:02 PM To: r-devel@stat.math.ethz.ch Subject: [Rd] Does cat(\a) ring a bell? Under GUIs other than Windows (Mac OS X, ESS, etc.) does cat(\a) still make a bell (or some other) sound? If so, I'll add a bell() function to utils. Duncan Murdoch __ R-devel@stat.math.ethz.ch mailing list https://stat.ethz.ch/mailman/listinfo/r-devel __ R-devel@stat.math.ethz.ch mailing list https://stat.ethz.ch/mailman/listinfo/r-devel
Re: [Rd] Does cat(\a) ring a bell?
On Mon, 7 Mar 2005 21:12:17 +0100, stefano iacus (si) wrote: no, on Mac OS X, but could be easily implemented. stefano On 07/mar/05, at 21:02, Duncan Murdoch wrote: Under GUIs other than Windows (Mac OS X, ESS, etc.) does cat(\a) still make a bell (or some other) sound? If so, I'll add a bell() function to utils. On Linux: xterm/gnome-terminal: yes ESS no .f __ R-devel@stat.math.ethz.ch mailing list https://stat.ethz.ch/mailman/listinfo/r-devel
[Rd] PR#7718
R-devel 2005/03/07 is totally innocent. Uninstalling Atlas 3.6.0 fixed this. You can close it out; once I figure out whether it's Gentoo's packaging of Atlas or Atlas/Athlon itself, I'll post a bug on whichever it turns out to be. __ R-devel@stat.math.ethz.ch mailing list https://stat.ethz.ch/mailman/listinfo/r-devel
