Re: [R] (no subject)
On 6 Oct 2016 07:55:28 - "abhishek pandey" wrote: > kindly solve my problem sir. > > The answer obviously is 42. JWDougherty __ R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
Re: [R] (no subject)
> On Oct 6, 2016, at 4:22 PM, Jeff Newmiller wrote: > > The OP sent a separate email which was slightly less obscure. Taken together > with this email, they suggest more a lack of familiarity with the concept of > an email thread and with the time scale and features of email support, rather > than a presumption of mind reading skills. One can hope that careful reading > of the Posting Guide and referenced materials by the OP will correct this > deficiency. > > I will admit to considering a fortune nomination at first reading though. Sigh. As a moderator of "non-subscriber postings", I initially rejected a posting from this email address 2 days ago with advice to read the Posting Guide and re-post with a more complete request and to avoid using HTML. So far, I have not seen a responsive effort to respond to that advice. The advice we moderators follow is to use a very liberal filter for what should be posted, but this poster does seem to be a challenge to that interpretation. Perhaps we should be referring some of these poorly documented postings to StackOverflow at the moderations event? What say you, members of the esteemed audience? -- David Winsemius > -- > Sent from my phone. Please excuse my brevity. > > On October 6, 2016 3:26:22 PM PDT, Jim Lemon wrote: >> It certainly does. As we are often confronted with requests for >> solutions of problems so minimally defined as to challenge the most >> eminent mindreader, this excels. We have a meta-problem as the >> supplicant him- (or her-, I cannot even ascertain this) does not >> appear to know what it is. Thus me are asked to both pose and solve >> the problem. While this may seem trivial to the casual reader, we must >> recall Adams' Paradox, that we might supply an answer, but be unable >> to state the question. >> >> Pardon the enthusiasm - I have just solved two gratuitous problems and >> I was, so to speak, primed for this message. >> >> Jim >> >> On Fri, Oct 7, 2016 at 7:20 AM, Rolf Turner >> wrote: >>> On 06/10/16 20:55, abhishek pandey wrote: kindly solve my problem sir. >>> >>> >>> That's it, in its entirety. Shouldn't that win some sort of prize? >>> >>> cheers, >>> >>> Rolf Turner >>> David Winsemius Alameda, CA, USA __ R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
Re: [R] (no subject)
The OP sent a separate email which was slightly less obscure. Taken together with this email, they suggest more a lack of familiarity with the concept of an email thread and with the time scale and features of email support, rather than a presumption of mind reading skills. One can hope that careful reading of the Posting Guide and referenced materials by the OP will correct this deficiency. I will admit to considering a fortune nomination at first reading though. -- Sent from my phone. Please excuse my brevity. On October 6, 2016 3:26:22 PM PDT, Jim Lemon wrote: >It certainly does. As we are often confronted with requests for >solutions of problems so minimally defined as to challenge the most >eminent mindreader, this excels. We have a meta-problem as the >supplicant him- (or her-, I cannot even ascertain this) does not >appear to know what it is. Thus me are asked to both pose and solve >the problem. While this may seem trivial to the casual reader, we must >recall Adams' Paradox, that we might supply an answer, but be unable >to state the question. > >Pardon the enthusiasm - I have just solved two gratuitous problems and >I was, so to speak, primed for this message. > >Jim > >On Fri, Oct 7, 2016 at 7:20 AM, Rolf Turner >wrote: >> On 06/10/16 20:55, abhishek pandey wrote: >>> >>> kindly solve my problem sir. >> >> >> That's it, in its entirety. Shouldn't that win some sort of prize? >> >> cheers, >> >> Rolf Turner >> >> -- >> Technical Editor ANZJS >> Department of Statistics >> University of Auckland >> Phone: +64-9-373-7599 ext. 88276 >> >> >> __ >> R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see >> https://stat.ethz.ch/mailman/listinfo/r-help >> PLEASE do read the posting guide >http://www.R-project.org/posting-guide.html >> and provide commented, minimal, self-contained, reproducible code. > >__ >R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see >https://stat.ethz.ch/mailman/listinfo/r-help >PLEASE do read the posting guide >http://www.R-project.org/posting-guide.html >and provide commented, minimal, self-contained, reproducible code. __ R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
Re: [R] (no subject)
The answer is 42 (in base 13). The question is "What do you get when you multiply six by nine?" On Thu, Oct 6, 2016 at 3:54 PM, Jim Lemon wrote: > No, I'm quite certain that the answer is: > > 7*6 = 3*2^4 - 36/6 > > but I don't know the question > > Jim > > On Fri, Oct 7, 2016 at 9:48 AM, Dalthorp, Daniel > wrote: > > Question and answer: > > > > 6*9 = (4)*13^1 + (2)*13^0 > > > > On Thu, Oct 6, 2016 at 3:26 PM, Jim Lemon wrote: > >> > >> It certainly does. As we are often confronted with requests for > >> solutions of problems so minimally defined as to challenge the most > >> eminent mindreader, this excels. We have a meta-problem as the > >> supplicant him- (or her-, I cannot even ascertain this) does not > >> appear to know what it is. Thus me are asked to both pose and solve > >> the problem. While this may seem trivial to the casual reader, we must > >> recall Adams' Paradox, that we might supply an answer, but be unable > >> to state the question. > >> > >> Pardon the enthusiasm - I have just solved two gratuitous problems and > >> I was, so to speak, primed for this message. > >> > >> Jim > >> > >> On Fri, Oct 7, 2016 at 7:20 AM, Rolf Turner > >> wrote: > >> > On 06/10/16 20:55, abhishek pandey wrote: > >> >> > >> >> kindly solve my problem sir. > >> > > >> > > >> > That's it, in its entirety. Shouldn't that win some sort of prize? > >> > > >> > cheers, > >> > > >> > Rolf Turner > >> > > >> > -- > >> > Technical Editor ANZJS > >> > Department of Statistics > >> > University of Auckland > >> > Phone: +64-9-373-7599 ext. 88276 > >> > > >> > > >> > __ > >> > R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see > >> > https://stat.ethz.ch/mailman/listinfo/r-help > >> > PLEASE do read the posting guide > >> > http://www.R-project.org/posting-guide.html > >> > and provide commented, minimal, self-contained, reproducible code. > >> > >> __ > >> R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see > >> https://stat.ethz.ch/mailman/listinfo/r-help > >> PLEASE do read the posting guide > >> http://www.R-project.org/posting-guide.html > >> and provide commented, minimal, self-contained, reproducible code. > >> > > > > > > > > -- > > Dan Dalthorp, PhD > > USGS Forest and Rangeland Ecosystem Science Center > > Forest Sciences Lab, Rm 189 > > 3200 SW Jefferson Way > > Corvallis, OR 97331 > > ph: 541-750-0953 > > ddalth...@usgs.gov > > > > -- Dan Dalthorp, PhD USGS Forest and Rangeland Ecosystem Science Center Forest Sciences Lab, Rm 189 3200 SW Jefferson Way Corvallis, OR 97331 ph: 541-750-0953 ddalth...@usgs.gov [[alternative HTML version deleted]] __ R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
Re: [R] (no subject)
No, I'm quite certain that the answer is: 7*6 = 3*2^4 - 36/6 but I don't know the question Jim On Fri, Oct 7, 2016 at 9:48 AM, Dalthorp, Daniel wrote: > Question and answer: > > 6*9 = (4)*13^1 + (2)*13^0 > > On Thu, Oct 6, 2016 at 3:26 PM, Jim Lemon wrote: >> >> It certainly does. As we are often confronted with requests for >> solutions of problems so minimally defined as to challenge the most >> eminent mindreader, this excels. We have a meta-problem as the >> supplicant him- (or her-, I cannot even ascertain this) does not >> appear to know what it is. Thus me are asked to both pose and solve >> the problem. While this may seem trivial to the casual reader, we must >> recall Adams' Paradox, that we might supply an answer, but be unable >> to state the question. >> >> Pardon the enthusiasm - I have just solved two gratuitous problems and >> I was, so to speak, primed for this message. >> >> Jim >> >> On Fri, Oct 7, 2016 at 7:20 AM, Rolf Turner >> wrote: >> > On 06/10/16 20:55, abhishek pandey wrote: >> >> >> >> kindly solve my problem sir. >> > >> > >> > That's it, in its entirety. Shouldn't that win some sort of prize? >> > >> > cheers, >> > >> > Rolf Turner >> > >> > -- >> > Technical Editor ANZJS >> > Department of Statistics >> > University of Auckland >> > Phone: +64-9-373-7599 ext. 88276 >> > >> > >> > __ >> > R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see >> > https://stat.ethz.ch/mailman/listinfo/r-help >> > PLEASE do read the posting guide >> > http://www.R-project.org/posting-guide.html >> > and provide commented, minimal, self-contained, reproducible code. >> >> __ >> R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see >> https://stat.ethz.ch/mailman/listinfo/r-help >> PLEASE do read the posting guide >> http://www.R-project.org/posting-guide.html >> and provide commented, minimal, self-contained, reproducible code. >> > > > > -- > Dan Dalthorp, PhD > USGS Forest and Rangeland Ecosystem Science Center > Forest Sciences Lab, Rm 189 > 3200 SW Jefferson Way > Corvallis, OR 97331 > ph: 541-750-0953 > ddalth...@usgs.gov > __ R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
Re: [R] (no subject)
Question and answer: 6*9 = (4)*13^1 + (2)*13^0 On Thu, Oct 6, 2016 at 3:26 PM, Jim Lemon wrote: > It certainly does. As we are often confronted with requests for > solutions of problems so minimally defined as to challenge the most > eminent mindreader, this excels. We have a meta-problem as the > supplicant him- (or her-, I cannot even ascertain this) does not > appear to know what it is. Thus me are asked to both pose and solve > the problem. While this may seem trivial to the casual reader, we must > recall Adams' Paradox, that we might supply an answer, but be unable > to state the question. > > Pardon the enthusiasm - I have just solved two gratuitous problems and > I was, so to speak, primed for this message. > > Jim > > On Fri, Oct 7, 2016 at 7:20 AM, Rolf Turner > wrote: > > On 06/10/16 20:55, abhishek pandey wrote: > >> > >> kindly solve my problem sir. > > > > > > That's it, in its entirety. Shouldn't that win some sort of prize? > > > > cheers, > > > > Rolf Turner > > > > -- > > Technical Editor ANZJS > > Department of Statistics > > University of Auckland > > Phone: +64-9-373-7599 ext. 88276 > > > > > > __ > > R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see > > https://stat.ethz.ch/mailman/listinfo/r-help > > PLEASE do read the posting guide http://www.R-project.org/ > posting-guide.html > > and provide commented, minimal, self-contained, reproducible code. > > __ > R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see > https://stat.ethz.ch/mailman/listinfo/r-help > PLEASE do read the posting guide http://www.R-project.org/ > posting-guide.html > and provide commented, minimal, self-contained, reproducible code. > > -- Dan Dalthorp, PhD USGS Forest and Rangeland Ecosystem Science Center Forest Sciences Lab, Rm 189 3200 SW Jefferson Way Corvallis, OR 97331 ph: 541-750-0953 ddalth...@usgs.gov [[alternative HTML version deleted]] __ R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
Re: [R] (no subject)
It certainly does. As we are often confronted with requests for solutions of problems so minimally defined as to challenge the most eminent mindreader, this excels. We have a meta-problem as the supplicant him- (or her-, I cannot even ascertain this) does not appear to know what it is. Thus me are asked to both pose and solve the problem. While this may seem trivial to the casual reader, we must recall Adams' Paradox, that we might supply an answer, but be unable to state the question. Pardon the enthusiasm - I have just solved two gratuitous problems and I was, so to speak, primed for this message. Jim On Fri, Oct 7, 2016 at 7:20 AM, Rolf Turner wrote: > On 06/10/16 20:55, abhishek pandey wrote: >> >> kindly solve my problem sir. > > > That's it, in its entirety. Shouldn't that win some sort of prize? > > cheers, > > Rolf Turner > > -- > Technical Editor ANZJS > Department of Statistics > University of Auckland > Phone: +64-9-373-7599 ext. 88276 > > > __ > R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see > https://stat.ethz.ch/mailman/listinfo/r-help > PLEASE do read the posting guide http://www.R-project.org/posting-guide.html > and provide commented, minimal, self-contained, reproducible code. __ R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
Re: [R] (no subject)
On 06/10/16 20:55, abhishek pandey wrote: kindly solve my problem sir. That's it, in its entirety. Shouldn't that win some sort of prize? cheers, Rolf Turner -- Technical Editor ANZJS Department of Statistics University of Auckland Phone: +64-9-373-7599 ext. 88276 __ R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
Re: [R] how to use 97.5%, 2.5% values of parameters for next calculation
> On Oct 6, 2016, at 7:07 AM, abhishek pandey > wrote: > > Sent from RediffmailNG on Android > > From: "abhishek pandey"abhishekpandey_1...@rediffmail.com > Sent:Thu, 06 Oct 2016 13:24:39 +0530 > To: r-help-ow...@r-project.org > Subject: how to use 97.5%,2.5% values of parameters for next calculation > Sir > I request you to help me for completing my programm. > SIZE STEPS Age BASEANDSTEPS num.thin num.chain num.iter num.burn ##NUMBER OF > ITERATIONS common for cohort model >> ITER time A1 library(R2WinBUGS) > Loading required package: boot > Warning messages: > 1: package ‘R2WinBUGS’ was built under R version 3.1.3 > 2: package ‘boot’ was built under R version 3.1.3 >> A1 J K low up lowl phi.ul phi.ll =c(18.776362,131.380765,20.367508, >> 50.197501,16.199959,1.262005, 1.148303) >> data parameters inits inits tfrsim tfrsim > [[alternative HTML version deleted]] > As you can see, the fact that you (still) have not read the Posting Guide and posted in HTML has left this message unreadable. Please _now_ take the time to read the Posting Guide. > __ > R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see > https://stat.ethz.ch/mailman/listinfo/r-help \/\/\/\/\/\/\/\/\/\/\/\/\/\/\ > PLEASE do read the posting guide http://www.R-project.org/posting-guide.html AND \/\/\/\/\/\/\ > and provide commented, minimal, self-contained, reproducible code. Which mean you need to include data either as a text attachment(with extension '.txt') or inline. ^^ David Winsemius Alameda, CA, USA __ R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
Re: [R] Dates
Hello, Your attachment didn't come through, save the file in the csv format and name it *.txt. Moreover, you ask what is wrong with your syntax, but what syntax? What is your code? Post a minimal example of what you are trying if you want answers from us. In the mean time at an R pormpt try ?as.Date ?format Hope this helps, Rui Barradas Citando Sinenhlanhla Mdluli via R-help : All I am having trouble converting dates into a uniform type using the R-code,I am not sure what is wrong with my syntax.But could you please tell me a more efficient way to qorking with time-series dates .I have attached the excel file that I want to convert dates on Regards __ R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code. __ R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
Re: [R] replicating PLINK's --genome calculations.
> On 6 Oct 2016, at 17:51, Bert Gunter wrote: > > You may get an answer here, but the Bioconductor site/list is almost > certainly a better place to post this. Good call — I would have never though of checking BioC. In fact the package SNPRelate seems to do what I need. Best F > > Cheers, > Bert > > > Bert Gunter > > "The trouble with having an open mind is that people keep coming along > and sticking things into it." > -- Opus (aka Berkeley Breathed in his "Bloom County" comic strip ) > > > On Thu, Oct 6, 2016 at 5:56 AM, Federico Calboli > wrote: >> Hi All, >> >> I have some genetic data and I want to resample it changing the number of >> individuals and/or the number of markers to show the effects of smaller >> sample sizes on the pairwise-IBD calculations. The “standard” I need to >> follow is PLINK, specifically the --genome option. I could create multiple >> subsets of the data, export it an have PLINK do the needed calculations, and >> then reimport the results in R, but this is obviously pretty silly, >> especially because it would require creating, exporting and importing a few >> hundreds files. I could write the needed functions to do what PLINK does, >> but I’d rather not reinvent the wheel so it might be worth asking: is there >> any package/function that would do (in R) what PLINK does with --genome? >> >> Bets wishes >> >> F >> >> -- >> Federico Calboli >> Ecological Genetics Research Unit >> Department of Biosciences >> PO Box 65 (Biocenter 3, Viikinkaari 1) >> FIN-00014 University of Helsinki >> Finland >> >> federico.calb...@helsinki.fi >> >> __ >> R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see >> https://stat.ethz.ch/mailman/listinfo/r-help >> PLEASE do read the posting guide http://www.R-project.org/posting-guide.html >> and provide commented, minimal, self-contained, reproducible code. -- Federico Calboli Ecological Genetics Research Unit Department of Biosciences PO Box 65 (Biocenter 3, Viikinkaari 1) FIN-00014 University of Helsinki Finland federico.calb...@helsinki.fi __ R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
Re: [R] (no subject)
On Thu, Oct 6, 2016 at 2:55 AM, abhishek pandey < abhishekpandey_1...@rediffmail.com> wrote: > kindly solve my problem sir. > > A very polite request. Unfortunately it is impossible because your email was HTML formatted and the list software removed the most of your email before sending it out. You must use "plain text" only. Also, depending on exactly what your request is, your response may well be "we don't do homework" (if it looks like class work), or if it appears that you want someone to write code for you, instead of helping with a specific problem in your code, then it is unlikely to be done because the list is not, generall, inhabited by unpaid consultants. -- Heisenberg may have been here. Unicode: http://xkcd.com/1726/ Maranatha! <>< John McKown [[alternative HTML version deleted]] __ R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
[R] Fw: how to use 97.5%,2.5% values of parameters for next calculation
Sent from RediffmailNG on Android From: "abhishek pandey"abhishekpandey_1...@rediffmail.com Sent:Thu, 06 Oct 2016 13:24:39 +0530 To: r-help-ow...@r-project.org Subject: how to use 97.5%,2.5% values of parameters for next calculation Sir I request you to help me for completing my programm. SIZE STEPS Age BASEANDSTEPS num.thin num.chain num.iter num.burn ##NUMBER OF ITERATIONS common for cohort model > ITER time A1 library(R2WinBUGS) Loading required package: boot Warning messages: 1: package ‘R2WinBUGS’ was built under R version 3.1.3 2: package ‘boot’ was built under R version 3.1.3 > A1 J K low up lowl phi.ul phi.ll =c(18.776362,131.380765,20.367508, > 50.197501,16.199959,1.262005, 1.148303) > data parameters inits inits tfrsim tfrsim [[alternative HTML version deleted]] __ R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
[R] (no subject)
kindly solve my problem sir. [[alternative HTML version deleted]] __ R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
[R] Dates
All I am having trouble converting dates into a uniform type using the R-code,I am not sure what is wrong with my syntax.But could you please tell me a more efficient way to qorking with time-series dates .I have attached the excel file that I want to convert dates on Regards __ R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
Re: [R] replicating PLINK's --genome calculations.
You may get an answer here, but the Bioconductor site/list is almost certainly a better place to post this. Cheers, Bert Bert Gunter "The trouble with having an open mind is that people keep coming along and sticking things into it." -- Opus (aka Berkeley Breathed in his "Bloom County" comic strip ) On Thu, Oct 6, 2016 at 5:56 AM, Federico Calboli wrote: > Hi All, > > I have some genetic data and I want to resample it changing the number of > individuals and/or the number of markers to show the effects of smaller > sample sizes on the pairwise-IBD calculations. The “standard” I need to > follow is PLINK, specifically the --genome option. I could create multiple > subsets of the data, export it an have PLINK do the needed calculations, and > then reimport the results in R, but this is obviously pretty silly, > especially because it would require creating, exporting and importing a few > hundreds files. I could write the needed functions to do what PLINK does, > but I’d rather not reinvent the wheel so it might be worth asking: is there > any package/function that would do (in R) what PLINK does with --genome? > > Bets wishes > > F > > -- > Federico Calboli > Ecological Genetics Research Unit > Department of Biosciences > PO Box 65 (Biocenter 3, Viikinkaari 1) > FIN-00014 University of Helsinki > Finland > > federico.calb...@helsinki.fi > > __ > R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see > https://stat.ethz.ch/mailman/listinfo/r-help > PLEASE do read the posting guide http://www.R-project.org/posting-guide.html > and provide commented, minimal, self-contained, reproducible code. __ R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
[R] replicating PLINK's --genome calculations.
Hi All, I have some genetic data and I want to resample it changing the number of individuals and/or the number of markers to show the effects of smaller sample sizes on the pairwise-IBD calculations. The “standard” I need to follow is PLINK, specifically the --genome option. I could create multiple subsets of the data, export it an have PLINK do the needed calculations, and then reimport the results in R, but this is obviously pretty silly, especially because it would require creating, exporting and importing a few hundreds files. I could write the needed functions to do what PLINK does, but I’d rather not reinvent the wheel so it might be worth asking: is there any package/function that would do (in R) what PLINK does with --genome? Bets wishes F -- Federico Calboli Ecological Genetics Research Unit Department of Biosciences PO Box 65 (Biocenter 3, Viikinkaari 1) FIN-00014 University of Helsinki Finland federico.calb...@helsinki.fi __ R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
