Re: [R] saveRDS() and readRDS() Why? [solved, kind of]

2018-11-10 Thread Patrick Connolly
On Thu, 08-Nov-2018 at 11:06AM +0100, Martin Maechler wrote:

|> > Patrick Connolly 
|> > on Thu, 8 Nov 2018 20:27:24 +1300 writes:

[...]

|> > 
|> > I still don't know Why, but I know How.
|> 
|> Hmm.. and nobody has been able to reproduce your problem, right?
|> 
|> IIUC, currently you are suggesting that [on Windows], if you do
|> 
|>   saveRDS(rawdata, file="rawdata.rds")
|> 
|> the resulting file is does not work withreadRDS()  on Linux.
|> What again are your R versions on the two platforms?


It's an old version on Windows.  I haven't used Windows R since then.

major  3  
minor  2.4
year   2016   
month  03 
day16 


I've tried R-3.5.0 and R-3.5.1 Linux versions.  The problem might be
entirely because of the ancient Windows version. 


|> 
|> Could you  dput() -- provide a (short if possible) version of rawdata where
|> that problem occurs ?

I can't make a smaller version of rawdata which comes from scraping a
non-public web address, but next week when I'm back where those
machines are, I'll try it with a small data frame which is
reproducible.



|> 
|> Best,
|> Martin
|> 
|> 
|> > ~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.   
|> >___Patrick Connolly   
|> >  {~._.~}   Great minds discuss ideas
|> >  _( Y )_Average minds discuss events 
|> > (:_~*~_:)  Small minds discuss people  
|> >  (_)-(_) . Eleanor Roosevelt
|> >  
|> > ~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.
|> > 
|> > __
|> > R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see
|> > https://stat.ethz.ch/mailman/listinfo/r-help
|> > PLEASE do read the posting guide 
http://www.R-project.org/posting-guide.html
|> > and provide commented, minimal, self-contained, reproducible code.

-- 
~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.   
   ___Patrick Connolly   
 {~._.~}   Great minds discuss ideas
 _( Y )_ Average minds discuss events 
(:_~*~_:)  Small minds discuss people  
 (_)-(_)  . Eleanor Roosevelt
  
~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.

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[R] summary function did not work with multcomp with 27 comparisons

2018-11-10 Thread Friedman, Richard A.
Dear List.

I submitted this inquiry on Thursday but it bounced because I wasn;s a memeber 
under my current e-mail address; I since joined, but did not receive Friday's 
issue. So
please excuse me if you have seen this query before.

I ran multcomp with 27 comparisons. The glht command returned an mcp object,
but the summary command with the Westfall correction ddi not give a summary.
When I ran the same dataset with 4 comparisons I got p-values. When I sued a 
summary with
univariate or Bonferroni�s method with all 27 comarisons I got p-values. But 
all 27 did not
work for Wesrfall. Please advise.
Here is a record of my session with 27 comparisons and Westfall:

R version 3.5.1 (2018-07-02) -- "Feather Spray"
Copyright (C) 2018 The R Foundation for Statistical Computing
Platform: x86_64-apple-darwin15.6.0 (64-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

  Natural language support but running in an English locale

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

[R.app GUI 1.70 (7543) x86_64-apple-darwin15.6.0]

[History restored from /Users/friedman/.Rapp.history]

objc[31790]: Class FIFinderSyncExtensionHost is implemented in both 
/System/Library/PrivateFrameworks/FinderKit.framework/Versions/A/FinderKit 
(0x7fff9c2b7c90) and 
/System/Library/PrivateFrameworks/FileProvider.framework/OverrideBundles/FinderSyncCollaborationFileProviderOverride.bundle/Contents/MacOS/FinderSyncCollaborationFileProviderOverride
 (0x119bf8cd8). One of the two will be used. Which one is undefined.
> library(multcomp)
Loading required package: mvtnorm
Loading required package: survival
Loading required package: TH.data
Loading required package: MASS

Attaching package: �TH.data�

The following object is masked from �package:MASS�:

geyser

> tumor<-read.table("a8_1wayall_input.txt",sep="\t",header=T)
> class(tumor)
[1] "data.frame"
> dim(tumor)
[1] 309   2
> tumor[1,]
 condition  log2vol
1 aa.vector.4w 7.297375
>
> model<-lm(log2vol~condition,data=tumor)
> summary(model)

Call:
lm(formula = log2vol ~ condition, data = tumor)

Residuals:
   Min 1Q Median 3QMax
-7.997 -2.414  0.291  2.164  8.059

Coefficients:
 Estimate Std. Error t value Pr(>|t|)
(Intercept)   4.587760.60457   7.588  4.3e-13 ***
conditionab.vector.6w 1.398180.85499   1.635 0.103054
conditionac.vector.8w 2.890850.85499   3.381 0.000820 ***
conditionba.dnmt1kd.4w   -2.674910.84733  -3.157 0.001760 **
conditionbb.dnmt1kd.6w   -1.433900.84733  -1.692 0.091654 .
conditionbc.dnmt1kd.8w   -0.471880.84733  -0.557 0.578020
conditionca.dnmt3bkd.4w  -3.153250.89139  -3.537 0.000469 ***
conditioncb.dnmt3bkd.6w  -2.173340.89139  -2.438 0.015355 *
conditioncc.dnmt3bkd.8w  -1.501870.89139  -1.685 0.093078 .
conditionda.dnmt1kdhrad9.4w   1.081531.08991   0.992 0.321863
conditiondb.dnmt1kdhrad9.6w   2.383831.08991   2.187 0.029517 *
conditiondc.dnmt1kdhrad9.8w   3.539901.08991   3.248 0.001297 **
conditionea.dnmt3bkdhrad9.4w  0.027951.06049   0.026 0.978991
conditioneb.dnmt3bkdhrad9.6w  1.340371.06049   1.264 0.207263
conditionec.dnmt3bkdhrad9.8w  3.409551.06049   3.215 0.001449 **
---
Signif. codes:  0 �***� 0.001 �**� 0.01 �*� 0.05 �.� 0.1 � � 1

Residual standard error: 3.141 on 294 degrees of freedom
Multiple R-squared:  0.3155, Adjusted R-squared:  0.2829
F-statistic: 9.678 on 14 and 294 DF,  p-value: < 2.2e-16

> model.mc<-glht(model,linfct=mcp(condition=c("ab.vector.6w-aa.vector.4w=0",
+"ac.vector.8w-aa.vector.4w=0",
+"ac.vector.8w-ab.vector.6w=0",
+   "bb.dnmt1kd.6w-ba.dnmt1kd.4w=0",
+"bc.dnmt1kd.8w-ba.dnmt1kd.4w=0",
+"bc.dnmt1kd.8w-bb.dnmt1kd.6w=0",
+ "cb.dnmt3bkd.6w-ca.dnmt3bkd.4w=0",
+"cc.dnmt3bkd.8w-ca.dnmt3bkd.4w=0",
+"cc.dnmt3bkd.8w-cb.dnmt3bkd.6w=0",
+ "db.dnmt1kdhrad9.6w-da.dnmt1kdhrad9.4w=0",
+"dc.dnmt1kdhrad9.8w-da.dnmt1kdhrad9.4w=0",
+"dc.dnmt1kdhrad9.8w-db.dnmt1kdhrad9.6w=0",
+ "eb.dnmt3bkdhrad9.6w-ea.dnmt3bkdhrad9.4w=0",
+"ec.dnmt3bkdhrad9.8w-ea.dnmt3bkdhrad9.4w=0",
+"ec.dnmt3bkdhrad9.8w-eb.dnmt3bkdhrad9.6w=0",
+   "ba.dnmt1kd.4w-aa.vector.4w=0",
+"ca.dnmt3bkd.4w-aa.vector.4w=0",
+"da.dnmt1kdhrad9.4w-ba.dnmt1kd.4w=0",
+"ea.dnmt3bkdhrad9.4w-ca.dnmt3bkd.4w=0",
+   

[R-es] ggplot2 con 2 columnas

2018-11-10 Thread Enrique Palacios
Dear all, I try to graph the two variables prec1 and prec2, using
ggplot2 for several points, using facet for the different points, in
similar times, total 8 times, the one variable is plotted, but I wish
the two in bars. If someone can help thank you

gr4 <- ggplot(malla, aes(x=tiempo,
y=prec1),color="blue",aes(x=tiempo,y=prec2),color="red")+
geom_bar(stat="identity")

gr4 + facet_grid(lugar ~.)

tiempo lugar prec1 prec2
1  t1a1 1 1
2  t2a1 2 2
etc   etc   etc

Thanks

















Dear all, I try to graph the two variables
prec1 and prec2, using ggplot2 for several points, using facet for the
different points, in similar times, total 8 times, the one variable is plotted,
but I wish the two in bars. If someone can help thank you



Dear all, I try to graph the two variables prec1 and prec2, using ggplot2
for several points, using facet for the different points, in similar times,
total 8 times, the one variable is plotted, but I wish the two in bars. If
someone can help thank you



 tiempo lugar prec1 prec2

1  t1a1 1 1

2  t2a1 2 2

3  t3a1 4 3

4  t4a1 3 2

5  t5a1 6 3

6  t6a1 3 2

7  t7a1 5 4

8  t8a1 4 5

9  t1a2 6 6

10 t2a2 3 3

11 t3a2 3 6

12 t4a2 2 3

13 t5a2 6 7

14 t6a2 5 4

15 t7a2 7 4

16 t8a2 3 2

View(malla)



library(ggplot2)

gr4 <- ggplot(malla, aes(x=tiempo,
y=prec1),color="blue",aes(x=tiempo,y=prec2),color="red")+
geom_bar(stat="identity")

gr4 + facet_grid(lugar ~.)

Dear all, I try to graph the two variables prec1 and prec2, using ggplot2
for several points, using facet for the different points, in similar times,
total 8 times, the one variable is plotted, but I wish the two in bars. If
someone can help thank you



Dear all, I try to graph the two variables prec1 and prec2, using ggplot2
for several points, using facet for the different points, in similar times,
total 8 times, the one variable is plotted, but I wish the two in bars. If
someone can help thank you



Dear all, I try to graph the two variables prec1 and prec2, using ggplot2
for several points, using facet for the different points, in similar times,
total 8 times, the one variable is plotted, but I wish the two in bars. If
someone can help thank you



Dear all, I try to graph the two variables prec1 and prec2, using ggplot2
for several points, using facet for the different points, in similar times,
total 8 times, the one variable is plotted, but I wish the two in bars. If
someone can help thank you



Dear all, I try to graph the two variables prec1 and prec2, using ggplot2
for several points, using facet for the different points, in similar times,
total 8 times, the one variable is plotted, but I wish the two in bars. If
someone can help thank you



Dear all, I try to graph the two variables prec1 and prec2, using ggplot2
for several points, using facet for the different points, in similar times,
total 8 times, the one variable is plotted, but I wish the two in bars. If
someone can help thank you



 tiempo lugar prec1 prec2

1  t1a1 1 1

2  t2a1 2 2

3  t3a1 4 3

4  t4a1 3 2

5  t5a1 6 3

6  t6a1 3 2

7  t7a1 5 4

8  t8a1 4 5

9  t1a2 6 6

10 t2a2 3 3

11 t3a2 3 6

12 t4a2 2 3

13 t5a2 6 7

14 t6a2 5 4

15 t7a2 7 4

16 t8a2 3 2

View(malla)



library(ggplot2)

gr4 <- ggplot(malla, aes(x=tiempo,
y=prec1),color="blue",aes(x=tiempo,y=prec2),color="red")+
geom_bar(stat="identity")

gr4 + facet_grid(lugar ~.)

Dear all, I try to graph the two variables prec1 and prec2, using ggplot2
for several points, using facet for the different points, in similar times,
total 8 times, the one variable is plotted, but I wish the two in bars. If
someone can help thank you



 tiempo lugar prec1 prec2

1  t1a1 1 1

2  t2a1 2 2

3  t3a1 4 3

4  t4a1 3 2

5  t5a1 6 3

6  t6a1 3 2

7  t7a1 5 4

8  t8a1 4 5

9  t1a2 6 6

10 t2a2 3 3

11 t3a2 3 6

12 t4a2 2 3

13 t5a2 6 7

14 t6a2 5 4

15 t7a2 7 4

16 t8a2 3 2

View(malla)



library(ggplot2)

gr4 <- ggplot(malla, aes(x=tiempo,
y=prec1),color="blue",aes(x=tiempo,y=prec2),color="red")+
geom_bar(stat="identity")

gr4 + facet_grid(lugar ~.)

Dear all, I try to graph the two variables prec1 and prec2, using ggplot2
for several points, using facet for the different points, in similar times,

Re: [R-es] Asignar distancias

2018-11-10 Thread José María Mateos
On Sun, Nov 11, 2018 at 12:43:40AM +0100, Manuel Mendoza wrote:
> Utilizo la función merge desde hace poco, pero no se me ocurre cómo
> utilizarla para esto. Yo pienso que se puede hacer con una combinación de
> ifelse-s pero no sé cómo. Seguro que hay más de una forma ce hacerlo.

¿Sería esta la solución?

> df1 <- data.frame(Var1 = c('a', 'a', 'a'), Var2 = c('a', 'b', 'c'), Dist = 
> c(0, 3, 4))
> df2 <- data.frame(Var1 = c('a', 'a'), Var2 = c('c', 'b'))
> df3 <- merge(df1, df2)
> df3
  Var1 Var2 Dist
  1ab3
  2ac4

Saludos,

-- 
José María (Chema) Mateos || https://rinzewind.org/

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Re: [R-es] Asignar distancias

2018-11-10 Thread Manuel Mendoza
Utilizo la función merge desde hace poco, pero no se me ocurre cómo  
utilizarla para esto. Yo pienso que se puede hacer con una combinación  
de ifelse-s pero no sé cómo. Seguro que hay más de una forma ce hacerlo.



Quoting José María Mateos :


On Sat, Nov 10, 2018 at 07:54:19PM +0100, Manuel Mendoza wrote:

Muy buenas. A ver si alguien puede echarme una mano.
A partir de una matriz de distancias de 29 x 29 he obtenido una df1.
Ahora tengo 841 filas con la distancia de cada combinación de esas 29
categorías.
Algo así como:

Var1   Var2   Dist
 a  a  0
 a  b  3
 a  c  5
 b  a  3
 b  b  0
 b  c  5
 c ...

En otra df2, de 14563 filas, tengo las variables 1 y 2, y necesito crear
otra variable con la distancia que aparece en la df1.


Si entiendo bien el problema, con la función merge tienes justo lo que
necesitas.

Saludos,

--
José María (Chema) Mateos || https://rinzewind.org/

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--
Dr Manuel Mendoza
Department of Biogeography and Global Change
National Museum of Natural History (MNCN)
Spanish Scientific Council (CSIC)
C/ Serrano 115bis, 28006 MADRID
Spain

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Re: [R-es] Asignar distancias

2018-11-10 Thread José María Mateos
On Sat, Nov 10, 2018 at 07:54:19PM +0100, Manuel Mendoza wrote:
> Muy buenas. A ver si alguien puede echarme una mano.
> A partir de una matriz de distancias de 29 x 29 he obtenido una df1.
> Ahora tengo 841 filas con la distancia de cada combinación de esas 29
> categorías.
> Algo así como:
> 
> Var1   Var2   Dist
>  a  a  0
>  a  b  3
>  a  c  5
>  b  a  3
>  b  b  0
>  b  c  5
>  c ...
> 
> En otra df2, de 14563 filas, tengo las variables 1 y 2, y necesito crear
> otra variable con la distancia que aparece en la df1.

Si entiendo bien el problema, con la función merge tienes justo lo que 
necesitas.

Saludos,

-- 
José María (Chema) Mateos || https://rinzewind.org/

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[R-es] Asignar distancias

2018-11-10 Thread Manuel Mendoza

Muy buenas. A ver si alguien puede echarme una mano.
A partir de una matriz de distancias de 29 x 29 he obtenido una df1.
Ahora tengo 841 filas con la distancia de cada combinación de esas 29  
categorías.

Algo así como:

Var1   Var2   Dist
 a  a  0
 a  b  3
 a  c  5
 b  a  3
 b  b  0
 b  c  5
 c ...

En otra df2, de 14563 filas, tengo las variables 1 y 2, y necesito  
crear otra variable con la distancia que aparece en la df1.
Lo he intentado colapsando var1 y var 2 en ambas dfs, obteniendo 841  
categorías en vez de 841 combinaciones de 29 categorías, pero no sé  
cómo seguir.

Muchas gracias, como siempre,
Manuel






















































.


--
Dr Manuel Mendoza
Department of Biogeography and Global Change
National Museum of Natural History (MNCN)
Spanish Scientific Council (CSIC)
C/ Serrano 115bis, 28006 MADRID
Spain

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Re: [R] Read

2018-11-10 Thread Val
Thank you Jeff and all.

My data is very messy and it is nice trick suggested by Jeff to handle it

On Fri, Nov 9, 2018 at 8:42 PM Jeff Newmiller  wrote:
>
> Your file has 5 commas in the first data row, but only 4 in the header. R
> interprets this to mean your first column is intended to be row names (has
> no corresponding column label) rather than data. (Row names are "outside"
> the data frame... use str(dsh) to get a better picture.)
>
> Basically, your file does not conform to consistent practices for csv
> files of having the same number of commas in every row. If at all possible
> I would eliminate the extra comma. If you have many of these broken files,
> you might need to read the data in pieces... e.g.
>
> dsh <- read.csv( "dat.csv", header=FALSE, skip=1 )
> dsh <- dsh[ , -length( dsh ) ]
> dshh <- read.csv( "dat.csv", header=TRUE, nrow=1)
> names( dsh ) <- names( dshh )
>
> On Fri, 9 Nov 2018, Val wrote:
>
> > HI all,
> > I am trying to read a csv file, but  have a problem in the row names.
> > After reading, the name of the first column is now "row.names" and
> > all other column names are shifted to the right. The value of the last
> > column become all NAs( as an extra column).
> >
> > My sample data looks like as follow,
> > filename = dat.csv
> > The first row has a missing value at column 3 and 5. The last row has
> > a missing value at column 1 and  5
> > x1,x2,x3,x4,x5
> > 12,13,,14,,
> > 22,23,24,25,26
> > ,33,34,34,
> > To read the file I used this
> >
> > dsh<-read.csv(file="dat.csv",sep=",",row.names=NULL,fill=TRUE,header=TRUE,comment.char
> > = "", quote = "", stringsAsFactors = FALSE)
> >
> > The output  from the above  is
> > dsh
> >
> > row.names x1 x2 x3 x4 x5
> > 112 13 NA 14 NA  NA
> > 222 23 24 25 26  NA
> > 3 33 34 34 NA  NA
> >
> > The name of teh frist column is row,banes and all values of last columns is 
> > NAs
> >
> >
> > However, the desired output should be
> > x1 x2 x3 x4 x5
> > 12 13 NA 14 NA
> > 22 23 24 25 26
> > NA 33 34 34 NA
> >
> >
> > How can I fix this?
> > Thank you in advance
> >
> > __
> > R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see
> > https://stat.ethz.ch/mailman/listinfo/r-help
> > PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
> > and provide commented, minimal, self-contained, reproducible code.
> >
>
> ---
> Jeff NewmillerThe .   .  Go Live...
> DCN:Basics: ##.#.   ##.#.  Live Go...
>Live:   OO#.. Dead: OO#..  Playing
> Research Engineer (Solar/BatteriesO.O#.   #.O#.  with
> /Software/Embedded Controllers)   .OO#.   .OO#.  rocks...1k
> ---

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Re: [R] HISTOGRAM

2018-11-10 Thread Medic
Rui Barradas,
thank you for your prompt response, your code will be useful to me in
the future!

Rick Bilonick ("your data appear to be categorical"),
thank you very much for your comment (I would have to more correctly
express my task).

JIM Lemon,
THANKS!!! THIS IS EXACTLY what I needed!

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Re: [R] Read

2018-11-10 Thread Ista Zahn
readr::read_csv produces the desired result by default:

readr::read_csv("x1,x2,x3,x4,x5
12,13,,14,,
22,23,24,25,26
,33,34,34,")

Best,
Ista
On Fri, Nov 9, 2018 at 8:40 PM Val  wrote:
>
> HI all,
> I am trying to read a csv file, but  have a problem in the row names.
> After reading, the name of the first column is now "row.names" and
> all other column names are shifted to the right. The value of the last
> column become all NAs( as an extra column).
>
> My sample data looks like as follow,
> filename = dat.csv
> The first row has a missing value at column 3 and 5. The last row has
> a missing value at column 1 and  5
> x1,x2,x3,x4,x5
> 12,13,,14,,
> 22,23,24,25,26
> ,33,34,34,
> To read the file I used this
>
> dsh<-read.csv(file="dat.csv",sep=",",row.names=NULL,fill=TRUE,header=TRUE,comment.char
> = "", quote = "", stringsAsFactors = FALSE)
>
> The output  from the above  is
> dsh
>
>  row.names x1 x2 x3 x4 x5
> 112 13 NA 14 NA  NA
> 222 23 24 25 26  NA
> 3 33 34 34 NA  NA
>
> The name of teh frist column is row,banes and all values of last columns is 
> NAs
>
>
> However, the desired output should be
>  x1 x2 x3 x4 x5
>  12 13 NA 14 NA
>  22 23 24 25 26
>  NA 33 34 34 NA
>
>
> How can I fix this?
> Thank you in advance
>
> __
> R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see
> https://stat.ethz.ch/mailman/listinfo/r-help
> PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
> and provide commented, minimal, self-contained, reproducible code.

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[ESS] eldoc in Rmd files

2018-11-10 Thread Leha, Andreas via ESS-help
Hi all,

I recently upgraded both emacs and ess.  One of those broke eldoc
functionality in Rmd files, which worked fine previously.

I can reproduce with `emacs -Q`.


To reproduce this, use this test.Rmd file:

--8<---cut here---start->8---
---
title: Test
---

```{r testblock, include = FALSE}
rnorm
```
--8<---cut here---end--->8---


- move the point to the source block
- type C-c C-v to update the references
- type the opening '(' after 'rnorm'

Now, I would expect the eldoc message in the echo buffer, as it appears
in ordinary R files.







This is a major limitation for my workflow.  Can I fix that somehow?











Thanks in advance!







Regards,



Andreas











PS:







Here is my setup:



- linux (debian buster)



- Emacs 26.1.50



- ess-version: 18.10.2



- polymode (0340f5e7e55235832e59673f027cc79a23cbdcd6)



- markdown-mode, version 2.4-dev











PPS:







And here is my minimal init.el:







--8<---cut here---start->8---



;; ess



(add-to-list 'load-path "~/local/emacs/ess/lisp")



;;(load "~/local/emacs/ess/lisp/ess-site.el")



(require 'ess-site)







;; markdown mode



(setq load-path



  (append '("~/local/emacs/markdown-mode/")



  load-path))



(autoload 'markdown-mode "markdown-mode"



   "Major mode for editing Markdown files" t)



;;(add-to-list 'auto-mode-alist '("\\.text\\'" . markdown-mode))



(add-to-list 'auto-mode-alist '("\\.markdown\\'" . markdown-mode))



(add-to-list 'auto-mode-alist '("\\.md\\'" . markdown-mode))







;; polymode



(setq load-path



  (append '("~/local/emacs/polymode/"
"~/local/emacs/polymode/modes")



  load-path))



(require 'poly-R)



(require 'poly-markdown)



;;; R modes



(add-to-list 'auto-mode-alist '("\\.Snw" . poly-noweb+r-mode))



(add-to-list 'auto-mode-alist '("\\.Rnw" . poly-noweb+r-mode))



(add-to-list 'auto-mode-alist '("\\.Rmd" . poly-markdown+r-mode))



--8<---cut here---end--->8---
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Re: [R] HISTOGRAM

2018-11-10 Thread Jim Lemon
Hi Medic,
Perhaps this:

medic_df<-read.table(text="name number
ds6277
lk 24375
ax46049
dd70656
az216544
df 220620
gh641827",
header=TRUE)
library(plotrix)
options(scipen=10)
barp(medic_df$number,names.arg=medic_df$name,width=0.5)

As others have noted, this is really a barplot with no spaces between the bars.

Jim
On Sat, Nov 10, 2018 at 5:46 AM Medic  wrote:
>
> What would be the correct code (simplest version) (without gplot())
> for histogram (with 7 bars), which would include 7 names of bars under
> the X-axis. The data are:
>
> name number
> ds6277
> lk 24375
> ax46049
> dd70656
> az216544
> df 220620
> gh641827
>
> (I'm attaching mydata.r, making with dput.)
>
> My attempt is:
>
> options(scipen=999)
> with (mydata, hist(number))
>
> P.S. I can't understand how the column "name" to include in a code
> __
> R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see
> https://stat.ethz.ch/mailman/listinfo/r-help
> PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
> and provide commented, minimal, self-contained, reproducible code.

__
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PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
and provide commented, minimal, self-contained, reproducible code.