[R] Solution: Re: Can't install R6 in new installation of R 3.5.2
The problem was not specific to R6 (and probably not to R 3.5.2).
In my .RProfile, I invoke source() on several of my *.R files that load
R6. Apparently the failed attempt to load a package prevents it from
being installed. Commenting out the offending lines in .RProfile solved
the problem.
FYI is this true attempting to do an install both from within an R
session and at the command line with 'R CMD INSTALL ...'
Regards
On 8/3/19 5:21 PM, Barnet Wagman wrote:
I've just installed R 3.5.2 (on Debian 10, Buster) and am unable to
install R6.
install.packages("R6");
yields
Installing package into ‘/home/xxx/R/x86_64-pc-linux-gnu-library/3.5’
(as ‘lib’ is unspecified)
trying URL 'https://cloud.r-project.org/src/contrib/R6_2.4.0.tar.gz'
Content type 'application/x-gzip' length 31545 bytes (30 KB)
==
downloaded 30 KB
Error in library(R6) : there is no package called ‘R6’
Calls: source -> withVisible -> eval -> eval -> library
Execution halted
The downloaded source packages are in
‘/tmp/RtmpMQfLun/downloaded_packages’
Warning message:
In install.packages("R6") :
installation of package ‘R6’ had non-zero exit status
Adding the 'dependencies=TRUE option' yields a whole slew of
Error in library(R6) : there is no package called ‘R6’
Calls: source -> withVisible -> eval -> eval -> library
Execution halted
errors. (The full output is below.)
I'd appreciate any thoughts on this. I've installed R /many/ times
and haven't run into this problem before.
Thanks.
Full output of 'install.packages("R6",dependencies=TRUE)'
> install.packages("R6",dependencies=TRUE)
Installing package into ‘/home/xxx/R/x86_64-pc-linux-gnu-library/3.5’
(as ‘lib’ is unspecified)
also installing the dependencies ‘backports’, ‘ellipsis’, ‘zeallot’,
‘utf8’, ‘vctrs’, ‘mime’, ‘glue’, ‘stringi’, ‘assertthat’, ‘plyr’,
‘fansi’, ‘pillar’, ‘pkgconfig’, ‘colorspace’, ‘evaluate’, ‘highr’,
‘markdown’, ‘stringr’, ‘yaml’, ‘xfun’, ‘Rcpp’, ‘cli’, ‘crayon’,
‘digest’, ‘magrittr’, ‘praise’, ‘rlang’, ‘withr’, ‘gtable’,
‘lazyeval’, ‘reshape2’, ‘tibble’, ‘viridisLite’, ‘labeling’,
‘munsell’, ‘RColorBrewer’, ‘knitr’, ‘microbenchmark’, ‘pryr’,
‘testthat’, ‘ggplot2’, ‘scales’
trying URL
'https://cloud.r-project.org/src/contrib/backports_1.1.4.tar.gz'
Content type 'application/x-gzip' length 13859 bytes (13 KB)
==
downloaded 13 KB
trying URL
'https://cloud.r-project.org/src/contrib/ellipsis_0.2.0.1.tar.gz'
Content type 'application/x-gzip' length 7045 bytes
==
downloaded 7045 bytes
trying URL
'https://cloud.r-project.org/src/contrib/zeallot_0.1.0.tar.gz'
Content type 'application/x-gzip' length 32549 bytes (31 KB)
==
downloaded 31 KB
trying URL 'https://cloud.r-project.org/src/contrib/utf8_1.1.4.tar.gz'
Content type 'application/x-gzip' length 218882 bytes (213 KB)
==
downloaded 213 KB
trying URL 'https://cloud.r-project.org/src/contrib/vctrs_0.2.0.tar.gz'
Content type 'application/x-gzip' length 668258 bytes (652 KB)
==
downloaded 652 KB
trying URL 'https://cloud.r-project.org/src/contrib/mime_0.7.tar.gz'
Content type 'application/x-gzip' length 13130 bytes (12 KB)
==
downloaded 12 KB
trying URL 'https://cloud.r-project.org/src/contrib/glue_1.3.1.tar.gz'
Content type 'application/x-gzip' length 122950 bytes (120 KB)
==
downloaded 120 KB
trying URL
'https://cloud.r-project.org/src/contrib/stringi_1.4.3.tar.gz'
Content type 'application/x-gzip' length 7290890 bytes (7.0 MB)
==
downloaded 7.0 MB
trying URL
'https://cloud.r-project.org/src/contrib/assertthat_0.2.1.tar.gz'
Content type 'application/x-gzip' length 12742 bytes (12 KB)
==
downloaded 12 KB
trying URL 'https://cloud.r-project.org/src/contrib/plyr_1.8.4.tar.gz'
Content type 'application/x-gzip' length 392451 bytes (383 KB)
==
downloaded 383 KB
trying URL 'https://cloud.r-project.org/src/contrib/fansi_0.4.0.tar.gz'
Content type 'application/x-gzip' length 266123 bytes (259 KB)
==
downloaded 259 KB
trying URL 'https://cloud.r-project.org/src/contrib/pillar_1.4.2.tar.gz'
Content type 'application/x-gzip' length 228815 bytes (223 KB)
==
downloaded 223 KB
trying URL
'https://cloud.r-project.org/src/contrib/pkgconfig_2.0.2.tar.gz'
Content type 'application/x-gzip' length 6024 bytes
==
[R] Can't install R6 in new installation of R 3.5.2
I've just installed R 3.5.2 (on Debian 10, Buster) and am unable to
install R6.
install.packages("R6");
yields
Installing package into ‘/home/xxx/R/x86_64-pc-linux-gnu-library/3.5’
(as ‘lib’ is unspecified)
trying URL 'https://cloud.r-project.org/src/contrib/R6_2.4.0.tar.gz'
Content type 'application/x-gzip' length 31545 bytes (30 KB)
==
downloaded 30 KB
Error in library(R6) : there is no package called ‘R6’
Calls: source -> withVisible -> eval -> eval -> library
Execution halted
The downloaded source packages are in
‘/tmp/RtmpMQfLun/downloaded_packages’
Warning message:
In install.packages("R6") :
installation of package ‘R6’ had non-zero exit status
Adding the 'dependencies=TRUE option' yields a whole slew of
Error in library(R6) : there is no package called ‘R6’
Calls: source -> withVisible -> eval -> eval -> library
Execution halted
errors. (The full output is below.)
I'd appreciate any thoughts on this. I've installed R /many/ times and
haven't run into this problem before.
Thanks.
Full output of 'install.packages("R6",dependencies=TRUE)'
> install.packages("R6",dependencies=TRUE)
Installing package into ‘/home/xxx/R/x86_64-pc-linux-gnu-library/3.5’
(as ‘lib’ is unspecified)
also installing the dependencies ‘backports’, ‘ellipsis’, ‘zeallot’,
‘utf8’, ‘vctrs’, ‘mime’, ‘glue’, ‘stringi’, ‘assertthat’, ‘plyr’,
‘fansi’, ‘pillar’, ‘pkgconfig’, ‘colorspace’, ‘evaluate’, ‘highr’,
‘markdown’, ‘stringr’, ‘yaml’, ‘xfun’, ‘Rcpp’, ‘cli’, ‘crayon’,
‘digest’, ‘magrittr’, ‘praise’, ‘rlang’, ‘withr’, ‘gtable’,
‘lazyeval’, ‘reshape2’, ‘tibble’, ‘viridisLite’, ‘labeling’,
‘munsell’, ‘RColorBrewer’, ‘knitr’, ‘microbenchmark’, ‘pryr’,
‘testthat’, ‘ggplot2’, ‘scales’
trying URL
'https://cloud.r-project.org/src/contrib/backports_1.1.4.tar.gz'
Content type 'application/x-gzip' length 13859 bytes (13 KB)
==
downloaded 13 KB
trying URL
'https://cloud.r-project.org/src/contrib/ellipsis_0.2.0.1.tar.gz'
Content type 'application/x-gzip' length 7045 bytes
==
downloaded 7045 bytes
trying URL
'https://cloud.r-project.org/src/contrib/zeallot_0.1.0.tar.gz'
Content type 'application/x-gzip' length 32549 bytes (31 KB)
==
downloaded 31 KB
trying URL 'https://cloud.r-project.org/src/contrib/utf8_1.1.4.tar.gz'
Content type 'application/x-gzip' length 218882 bytes (213 KB)
==
downloaded 213 KB
trying URL 'https://cloud.r-project.org/src/contrib/vctrs_0.2.0.tar.gz'
Content type 'application/x-gzip' length 668258 bytes (652 KB)
==
downloaded 652 KB
trying URL 'https://cloud.r-project.org/src/contrib/mime_0.7.tar.gz'
Content type 'application/x-gzip' length 13130 bytes (12 KB)
==
downloaded 12 KB
trying URL 'https://cloud.r-project.org/src/contrib/glue_1.3.1.tar.gz'
Content type 'application/x-gzip' length 122950 bytes (120 KB)
==
downloaded 120 KB
trying URL
'https://cloud.r-project.org/src/contrib/stringi_1.4.3.tar.gz'
Content type 'application/x-gzip' length 7290890 bytes (7.0 MB)
==
downloaded 7.0 MB
trying URL
'https://cloud.r-project.org/src/contrib/assertthat_0.2.1.tar.gz'
Content type 'application/x-gzip' length 12742 bytes (12 KB)
==
downloaded 12 KB
trying URL 'https://cloud.r-project.org/src/contrib/plyr_1.8.4.tar.gz'
Content type 'application/x-gzip' length 392451 bytes (383 KB)
==
downloaded 383 KB
trying URL 'https://cloud.r-project.org/src/contrib/fansi_0.4.0.tar.gz'
Content type 'application/x-gzip' length 266123 bytes (259 KB)
==
downloaded 259 KB
trying URL 'https://cloud.r-project.org/src/contrib/pillar_1.4.2.tar.gz'
Content type 'application/x-gzip' length 228815 bytes (223 KB)
==
downloaded 223 KB
trying URL
'https://cloud.r-project.org/src/contrib/pkgconfig_2.0.2.tar.gz'
Content type 'application/x-gzip' length 6024 bytes
==
downloaded 6024 bytes
trying URL
'https://cloud.r-project.org/src/contrib/colorspace_1.4-1.tar.gz'
Content type 'application/x-gzip' length 2152594 bytes (2.1 MB)
==
downloaded 2.1 MB
trying URL
'https://cloud.r-project.org/src/contrib/evaluate_0.14.tar.gz'
Content type 'application/x-gzip' length 24206 bytes (23 KB)
==
downloaded 23 KB
trying URL 'https://cloud.r-project.org/src/contrib/highr_0.8.tar.gz'
Content type
[R] Can't install R6 in new installation of R 3.5.2
I've just installed R 3.5.2 (on Debian 10, Buster) and am unable to
install R6.
install.packages("R6");
yields
Installing package into ‘/home/xxx/R/x86_64-pc-linux-gnu-library/3.5’
(as ‘lib’ is unspecified)
trying URL 'https://cloud.r-project.org/src/contrib/R6_2.4.0.tar.gz'
Content type 'application/x-gzip' length 31545 bytes (30 KB)
==
downloaded 30 KB
Error in library(R6) : there is no package called ‘R6’
Calls: source -> withVisible -> eval -> eval -> library
Execution halted
The downloaded source packages are in
‘/tmp/RtmpMQfLun/downloaded_packages’
Warning message:
In install.packages("R6") :
installation of package ‘R6’ had non-zero exit status
Adding the 'dependencies=TRUE option' yields a whole slew of
Error in library(R6) : there is no package called ‘R6’
Calls: source -> withVisible -> eval -> eval -> library
Execution halted
errors. (The full output is below.)
I'd appreciate any thoughts on this. I've installed R /many/ times and
haven't run into this problem before.
Thanks.
Full output of 'install.packages("R6",dependencies=TRUE)'
> install.packages("R6",dependencies=TRUE)
Installing package into ‘/home/xxx/R/x86_64-pc-linux-gnu-library/3.5’
(as ‘lib’ is unspecified)
also installing the dependencies ‘backports’, ‘ellipsis’, ‘zeallot’,
‘utf8’, ‘vctrs’, ‘mime’, ‘glue’, ‘stringi’, ‘assertthat’, ‘plyr’,
‘fansi’, ‘pillar’, ‘pkgconfig’, ‘colorspace’, ‘evaluate’, ‘highr’,
‘markdown’, ‘stringr’, ‘yaml’, ‘xfun’, ‘Rcpp’, ‘cli’, ‘crayon’,
‘digest’, ‘magrittr’, ‘praise’, ‘rlang’, ‘withr’, ‘gtable’,
‘lazyeval’, ‘reshape2’, ‘tibble’, ‘viridisLite’, ‘labeling’,
‘munsell’, ‘RColorBrewer’, ‘knitr’, ‘microbenchmark’, ‘pryr’,
‘testthat’, ‘ggplot2’, ‘scales’
trying URL
'https://cloud.r-project.org/src/contrib/backports_1.1.4.tar.gz'
Content type 'application/x-gzip' length 13859 bytes (13 KB)
==
downloaded 13 KB
trying URL
'https://cloud.r-project.org/src/contrib/ellipsis_0.2.0.1.tar.gz'
Content type 'application/x-gzip' length 7045 bytes
==
downloaded 7045 bytes
trying URL
'https://cloud.r-project.org/src/contrib/zeallot_0.1.0.tar.gz'
Content type 'application/x-gzip' length 32549 bytes (31 KB)
==
downloaded 31 KB
trying URL 'https://cloud.r-project.org/src/contrib/utf8_1.1.4.tar.gz'
Content type 'application/x-gzip' length 218882 bytes (213 KB)
==
downloaded 213 KB
trying URL 'https://cloud.r-project.org/src/contrib/vctrs_0.2.0.tar.gz'
Content type 'application/x-gzip' length 668258 bytes (652 KB)
==
downloaded 652 KB
trying URL 'https://cloud.r-project.org/src/contrib/mime_0.7.tar.gz'
Content type 'application/x-gzip' length 13130 bytes (12 KB)
==
downloaded 12 KB
trying URL 'https://cloud.r-project.org/src/contrib/glue_1.3.1.tar.gz'
Content type 'application/x-gzip' length 122950 bytes (120 KB)
==
downloaded 120 KB
trying URL
'https://cloud.r-project.org/src/contrib/stringi_1.4.3.tar.gz'
Content type 'application/x-gzip' length 7290890 bytes (7.0 MB)
==
downloaded 7.0 MB
trying URL
'https://cloud.r-project.org/src/contrib/assertthat_0.2.1.tar.gz'
Content type 'application/x-gzip' length 12742 bytes (12 KB)
==
downloaded 12 KB
trying URL 'https://cloud.r-project.org/src/contrib/plyr_1.8.4.tar.gz'
Content type 'application/x-gzip' length 392451 bytes (383 KB)
==
downloaded 383 KB
trying URL 'https://cloud.r-project.org/src/contrib/fansi_0.4.0.tar.gz'
Content type 'application/x-gzip' length 266123 bytes (259 KB)
==
downloaded 259 KB
trying URL 'https://cloud.r-project.org/src/contrib/pillar_1.4.2.tar.gz'
Content type 'application/x-gzip' length 228815 bytes (223 KB)
==
downloaded 223 KB
trying URL
'https://cloud.r-project.org/src/contrib/pkgconfig_2.0.2.tar.gz'
Content type 'application/x-gzip' length 6024 bytes
==
downloaded 6024 bytes
trying URL
'https://cloud.r-project.org/src/contrib/colorspace_1.4-1.tar.gz'
Content type 'application/x-gzip' length 2152594 bytes (2.1 MB)
==
downloaded 2.1 MB
trying URL
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cloudRmpi v 1.2 is now available on CRAN. cloudRmpi is a means for doing parallel processing in R, using MPI on a cloud-based network. It currently supports the use of Amazon's EC2 cloud computer service. Changes in v 1.2: Support for RStudio. RStudio Server is available on new AMIs. cloudRmpi now has a function for securely connecting to an RStudio session running on the master node of an EC2-MPI network, via ssh port forwarding. (RStudio Server is a browser based, IDE-like interface to R). The network specification dialog shows more information about AMIs. The network manager has a command to repeat Open MPI network network configuration. Regards, Barnet Wagman __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
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