[R] roc plot with zero length labels error
I am trying to create the roc plot bootstrap method from library(verification),
and when I set the plot =both or emp then I get the following error. The
roc.plot works fine when the plot is set to binorm. This is my first time using
this function in R and am not sure what this error means or how to resolve the
issue. It seems to work ok with the example dataset. Is there an option or data
formatting I need to due to resolve this error?
roc.plot((scicomp5.model1[164]==High Price), pred, CI = T, n.boot = 100, plot
= 'both',binormal = TRUE,
+ main = paste('AREA UNDER CURVE (AUC) =', round(auc$A, 2)))
Error in text.default(DAT[id, 3, i], DAT[id, 2, i], plot.thres[id2], pos = 4,
:
zero length 'labels'
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[R] Help with RODBC connection to multiple MS SQL Sever databases
I'm trying to pull data from multiple MS SQL Sever databse in R. I can access the databases one at a time, but the tables are to large to pull the entire tables then join then in R. So I need to do a SQL join that will join the tables from the each of the databases. How do I combine the connection so that I can implement it in my sql query below. I'm currently getting the following error: region [1] [RODBC] ERROR: Could not SQLExecDirect [2] 42000 102 [Microsoft][ODBC SQL Server Driver][SQL Server]Incorrect syntax near 'Completed'. When I look at the tables from the contab-sqlTables(con), it is only getting information from one of the databases. library(RODBC) dwparadigm-odbcConnect(dsn=dwParadigm, uid = X, pwd = XX, case = nochange, believeNRows = TRUE) rptparadigm-odbcConnect(dsn=Rpt_Paradigm, uid = X, pwd = , case = nochange, believeNRows = TRUE) wcrpt-odbcConnect(dsn=WC_Reporting, uid = X, pwd = X, case = nochange, believeNRows = TRUE) con-odbcConnect(dsn=c(dwParadigm,Rpt_Paradigm,WC_Reporting) contab-sqlTables(con) region-sqlQuery(con,'SELECT DISTINCT dbo_PATIENT.PATIENT, dbo_CONTRACT.CONTRACT, dbo_PATIENT.PATIENT_EPISODE, dbo_PATIENT.LAST_NAME, dbo_PATIENT.FIRST_NAME, dbo_CONTRACT.CON_STATUS, dbo_CONTRACT.CON_NUMBER, dbo_PATIENT.STATE, dbo_REGION_TERR.OPS_REGION, dbo_REGION_TERR.SPG_TERR, Sum(dbo_Line.total_ln_paid_amount) AS SumOftotal_ln_paid_amount FROM dbo_CONTRACT INNER JOIN dbo_REGION_TERR RIGHT JOIN dbo_PATIENT ON dbo_REGION_TERR.STATE = dbo_PATIENT.STATE ON dbo_CONTRACT.PATIENT = dbo_PATIENT.PATIENT AND dbo_CONTRACT.PatientEpisodeID = dbo_PATIENT.PATIENT_EPISODE INNER JOIN dbo_Line ON dbo_PATIENT.PATIENT = dbo_Line.claim WHERE dbo_PATIENT.DIAGNOSIS_TYPE=ABI AND dbo_CONTRACT.CON_STATUS In Completed AND dbo_CONTRACT.CON_NUMBER Like OP* GROUP BY dbo_PATIENT.PATIENT, dbo_CONTRACT.CONTRACT, dbo_PATIENT.PATIENT_EPISODE, dbo_PATIENT.LAST_NAME , dbo_PATIENT.FIRST_NAME, dbo_CONTRACT.CON_STATUS, dbo_CONTRACT.CON_NUMBER, dbo_PATIENT.STATE , dbo_REGION_TERR.OPS_REGION, dbo_REGION_TERR.SPG_TERR ') odbcCloseAll() region [1] [RODBC] ERROR: Could not SQLExecDirect [2] 42000 102 [Microsoft][ODBC SQL Server Driver][SQL Server]Incorrect syntax near 'Completed'. Chris Anderson http://www.seocodebreaker.com/?thankyou-page=429 The easiest way to create a blog. Click now! http://thirdpartyoffers.netzero.net/TGL2241/fc/BLSrjpYRxiYGYCuyKabTb5JapHgbWqUjvZ4P8AguC0ACizbuKJCNdYf7SL2/ [[alternative HTML version deleted]] __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
[R] Help resolving error in quantcut
I am trying to use the quantcut function to create deciles, but I am getting the error below. I am new to using this function and do not know how to properly use the options or some other conversion that is necessary. #initial summary using describe function in Hmisc library DegreeBurn4th n missing uniqueMean .05 .10 .25 .50 .75 .90 .95 76 133 16 0.0325 0. 0. 0. 0. 0.0225 0.0900 0.1725 0 0.01 0.02 0.03 0.04 0.05 0.06 0.08 0.09 0.12 0.16 0.17 0.18 0.24 0.36 0.5 Frequency 486342211211111 1 1 % 63845331131111 11 1 degree.quant = quantcut(DegreeBurn4th, q=seq(0, 1, 0.1), labels=F,na.rm=TRUE) Error in if (sum(flag) == 0) return(cut) else return(min(x[flag], na.rm = na.rm)) : missing value where TRUE/FALSE needed #orignal data print(DegreeBurn4th) [1] 0.09 0.00 0.00 NA NA 0.03 NA 0.02 NA 0.00 0.01 0.00 NA NA NA NA NA 0.00 NA 0.05 0.03 0.00 NA 0.02 0.00 NA 0.00 NA NA 0.16 NA NA 0.24 [34] NA NA 0.00 NA 0.00 0.08 NA NA NA 0.00 0.00 NA NA 0.01 NA 0.09 NA 0.00 0.00 0.00 0.06 NA 0.00 NA NA 0.00 NA NA 0.00 0.01 NA NA 0.00 [67] NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 0.00 NA NA 0.00 NA 0.05 0.00 NA NA NA 0.00 0.02 0.18 NA NA NA 0.03 NA [100] NA 0.00 NA NA NA 0.36 NA NA NA NA 0.00 0.00 0.00 NA 0.00 NA 0.17 NA 0.00 NA NA NA 0.00 NA 0.00 0.00 0.00 NA NA 0.12 0.00 NA 0.01 [133] 0.00 NA NA NA NA 0.00 0.00 NA 0.01 0.00 0.00 NA NA 0.00 0.04 NA NA NA 0.00 0.00 NA 0.03 NA 0.00 NA 0.00 NA NA 0.01 0.00 0.00 NA NA [166] NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA 0.50 NA NA NA NA NA NA NA NA 0.04 [199] NA NA NA NA NA NA NA NA NA NA NA #convert missing to zero DegreeBurn4th[is.na(DegreeBurn4th)]-0.00 print(DegreeBurn4th) [1] 0.09 0.00 0.00 0.00 0.00 0.03 0.00 0.02 0.00 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.05 0.03 0.00 0.00 0.02 0.00 0.00 0.00 0.00 0.00 0.16 0.00 0.00 0.24 [34] 0.00 0.00 0.00 0.00 0.00 0.08 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.09 0.00 0.00 0.00 0.00 0.06 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.00 0.00 [67] 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.05 0.00 0.00 0.00 0.00 0.00 0.02 0.18 0.00 0.00 0.00 0.03 0.00 [100] 0.00 0.00 0.00 0.00 0.00 0.36 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.12 0.00 0.00 0.01 [133] 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.04 0.00 0.00 0.00 0.00 0.00 0.00 0.03 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.00 0.00 0.00 [166] 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.50 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.04 [199] 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 degree.quant = quantcut(DegreeBurn4th, q=seq(0, 1, 0.1), labels=F,na.rm=TRUE) Error in if (pairs[1, i] == pairs[1, i - 1] pairs[1, i] == pairs[2, : missing value where TRUE/FALSE needed degree.quant = quantcut(DegreeBurn4th, q=seq(0, 1, 0.1), labels=F,include.lowest=TRUE) Error in cut.default(x[!flag], breaks = newquant, include.lowest = TRUE, : formal argument include.lowest matched by multiple actual arguments degree.quant = quantcut(DegreeBurn4th, q=seq(0, 1, 0.1), labels=F,include.lowest=F) Error in cut.default(x[!flag], breaks = newquant, include.lowest = TRUE, : formal argument include.lowest matched by multiple actual arguments degree.quant = quantcut(DegreeBurn4th, q=seq(0, 1, 0.1), labels=F,include.lowest=T) Error in cut.default(x[!flag], breaks = newquant, include.lowest = TRUE, : formal argument include.lowest matched by multiple actual arguments Chris Anderson http://www.seocodebreaker.com/?thankyou-page=429 Criminal Lawyers - Click here. http://thirdpartyoffers.netzero.net/TGL2241/fc/BLSrjpYbd6xeB8PyC2qYcdt9oup93MpUqzGGHKa4mySkwS9XNfuLPlvlNq4/ [[alternative HTML version deleted]] __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
[R] help exporting to excel via xlsReadWritePro
Im trying to export a file from R to excel using the xlsReadWritePro function and I keep getting the error below. I get the same error when I use the oledatetime function. My current date format is mm/dd/, which is how I want it in excel. Also is there anyway to export different datasets to multiple sheets similar to the ods function in SAS? ?xml:namespace prefix = o ns = urn:schemas-microsoft-com:office:office / library(xlsReadWritePro) write.xls(rancho,file=H:\\Chris A\\Brain Injury\\Data\\rancho3.xls) Error in write.xls(rancho, file = H:\\Chris A\\Brain Injury\\Data\\rancho3.xls) : POSIXt is not a valid entry (try: unassigned/double/numeric/integer/logical/character/factor/NA/oledate/oletime/oledatetime/isodate/isotime/isodatetime/link/formula/mixed/mixedCharacter/mixedFactor) write.xls(rancho,file=H:\\Chris A\\Brain Injury\\Data\\rancho3.xls,dateTimeAs = oledatetime) Error in write.xls(rancho, file = H:\\Chris A\\Brain Injury\\Data\\rancho3.xls, : POSIXt is not a valid entry (try: unassigned/double/numeric/integer/logical/character/factor/NA/oledate/oletime/oledatetime/isodate/isotime/isodatetime/link/formula/mixed/mixedCharacter/mixedFactor) Chris Anderson 707.315.8486 www.sassydeals4u.com Save on Criminal Lawyer Services. Click Now! http://thirdpartyoffers.netzero.net/TGL2241/fc/BLSrjpYbd6x4nBy5Jx35gNadAcucOpjXKqZUZ0Ak7EUZFLp3rBhwqdFMHU8/ [[alternative HTML version deleted]] __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
[R] Export data to Multiple Sheets in Excel via xlsReadWritePro
Is there a way to export multiple datasets into multiple excel spreadsheets using xlsReadWritePro or with xlsReadWrite? Chris Anderson 707.315.8486 www.sassydeals4u.com Turn any room into a work of art. Click now for beautiful oriental rugs! http://thirdpartyoffers.netzero.net/TGL2241/fc/BLSrjpYTn25sHSvcJxIFkg2LQZq3YvMQZNiqayXOtvmGyEr0aHVB9S369Dy/ [[alternative HTML version deleted]] __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
[R] recoding charactor variables with special charactors
I have a several character variables that I need to recode, but some of them have special characters like single quote or ( ). How tell R to ignore these special characters so I can rename them? Below is the error message I am getting. social$FamilySupport[social$FamilySupport==Mr. XXXs' extended family live in the Nashville area where he and his wife reside.]-Highly Supportive Warning in `[-.factor`(`*tmp*`, social$FamilySupport == Mr. XXXs' extended family live in the Nashville area where he and his wife reside., : invalid factor level, NAs generated Chris Anderson 707.315.8486 www.sassydeals4u.com Click to find deals on color printers and inks. http://thirdpartyoffers.netzero.net/TGL2241/fc/BLSrjpYR5fJC7MeC1xbOpWpulSKIYlbNvfa8G3h7se8nrP9RvM2utx3A3bK/ [[alternative HTML version deleted]] __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
[R] help with duplicates
I have a large dataset that contain duplicate records. How do I identify and remove duplicate records? Chris Anderson 707.315.8486 www.sassydeals4u.com Free info for small business owners. Click here to find great products geared for your business. http://thirdpartyoffers.netzero.net/TGL2241/fc/BLSrjpYWIQYSqjUJ0P8Kjx22OUKmSdbeF2JnHh5X1EZsmlucvn6niiClhHS/ [[alternative HTML version deleted]] __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
