[R] print (names and) values of parameters of function
I try to print (names and) values of parameters of a function within
that function, like:
F <- function(x, y, z=4, ...) {
print("x = ", x, " , y = ", y, "... = " , ...)
in a fashion that avoids the explicit mention of "x = ", x, " , y = ",
y, "... = " , ...
Combinations of eval, substitute, formals, etc. should be able to do the
job, but I didn't find help online.
Anyone lend a helping hand?
TIA Christian
--
Christian W. Hoffmann
CH - 8915 Hausen am Albis, Schweiz
Rigiblickstrasse 15 b, Tel.+41-44-7640853
mailto: christ...@echoffmann.ch
home: www.echoffmann.ch
__
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PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
and provide commented, minimal, self-contained, reproducible code.
[R] Sweave vs. R CMD Rd2pdf --no-clean --force
Hi, I have a *.Rnw which I can Sweave with no problem, but which cannot be processed by R CMD Rd2pdf --no-clean --force. Th latter stops with creating vignettes ... ERROR Error: processing vignette 'cwhmisc.Rnw' failed with diagnostics: at cwhmisc.Rnw:31, could not find function "cformat" Execution halted Before dissecting my *.Rnw systematically , I wanted to ask, if R CMD Rd2pdf has changed since the last R version. sessionInfo() R version 3.2.1 (2015-06-18) Platform: x86_64-apple-darwin10.8.0 (64-bit) Running under: OS X 10.7.5 (Lion) locale: [1] C attached base packages: [1] tools stats4splines parallel datasets [6] compiler graphics grDevices stats grid [11] utils methods base other attached packages: [1] survival_2.38-3spatial_7.3-11 .. Any ideas ? C. -- Christian W. Hoffmann CH - 8915 Hausen am Albis, Schweiz Rigiblickstrasse 15 b, Tel.+41-44-7640853 mailto: christ...@echoffmann.ch home: www.echoffmann.ch __ R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
[R] object 'add.expr' not found
Since the change to R-3.2.1 I seem to be unable to compile and install my package cwhmisc. One evidence is the appearance of th messages in R CMD build and install: * installing *source* package 'cwhmisc' ... ** R ** inst ** preparing package for lazy loading Error in eval(expr, envir, enclos) : object 'add.expr' not found Can anyone give me a pointer to where I should investigate my problem further? C. -- Christian W. Hoffmann CH - 8915 Hausen am Albis, Schweiz Rigiblickstrasse 15 b, Tel.+41-44-7640853 mailto: christ...@echoffmann.ch home: www.echoffmann.ch __ R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
[R] value of variable in ls()
This may seem trivial:
ls() gives me names of variables as a character vector. How can I print
the values 'behind' those character values:
ls()
> "a"
> a
[1] 5
How can I do e.g. print("unknown"(ls())) and get the variable values in
my current environment?
--
Christian W. Hoffmann
CH - 8915 Hausen am Albis, Schweiz
Rigiblickstrasse 15 b, Tel.+41-44-7640853
mailto: christ...@echoffmann.ch
home: www.echoffmann.ch
__
R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see
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PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
and provide commented, minimal, self-contained, reproducible code.
[R] ERROR: unable to collate and parse R files
I tried in vain to execute
R CMD install /Users/hoffmann/R/cwhmisc ('cwhmisc' is the package name)
* installing to library
‘/Library/Frameworks/R.framework/Versions/3.2/Resources/library’
* installing *source* package ‘cwhmisc’ ...
** R
Error : '\' ist eine unbekannte Escape-Sequenz in der Zeichenkette
beginnend mit \
ERROR: unable to collate and parse R files for package ‘cwhmisc’
* removing
‘/Library/Frameworks/R.framework/Versions/3.2/Resources/library/cwhmisc’
* restoring previous
‘/Library/Frameworks/R.framework/Versions/3.2/Resources/library/cwhmisc’
under
sessionInfo()
R version 3.2.1 (2015-06-18)
Platform: x86_64-apple-darwin10.8.0 (64-bit)
Running under: OS X 10.7.5 (Lion)
locale:
[1] C
attached base packages:
[1] tools stats4splines parallel compiler grid stats
[8] graphics grDevices utils datasets methods base
other attached packages:
[1] survival_2.38-1spatial_7.3-9 rpart_4.1-9 nnet_7.3-9
[5] mgcv_1.8-6 nlme_3.1-120 foreign_0.8-63 codetools_0.2-11
[9] cluster_2.0.1 class_7.3-12 boot_1.3-16 Matrix_1.2-1
[13] MASS_7.3-40KernSmooth_2.23-14 cwhmisc_6.0 lattice_0.20-31
Strategy of mine:
- search the net :
- grep for '\' : to no avail
- remove ~/.Rprofile : no success (it contained only
'options(repos=c(CRAN=http://stat.ethz.ch/CRAN/;))' anyway)
- change CRAN mirror in .Rprofile : no success
- check vignette : nothing
- R CMD check --as-cran /Users/hoffmann/R/cwhmisc : Installation failed.
00install.out reads (also) Error : '\' is an unrecognized escape in
character string starting \
ERROR: unable to collate and parse R files for package 'cwhmisc'
What could be a way out of this maze?
--
Christian W. Hoffmann
CH - 8915 Hausen am Albis, Schweiz
Rigiblickstrasse 15 b, Tel.+41-44-7640853
mailto: christ...@echoffmann.ch
home: www.echoffmann.ch
__
R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see
https://stat.ethz.ch/mailman/listinfo/r-help
PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
and provide commented, minimal, self-contained, reproducible code.
[R] R CMD wants (unnecessary) packages ?
When executing R CMD check etc. on a package, 00install.out tells me Warning in file.copy(file.path(.Library, pkg, DESCRIPTION), pd) : problem copying /Library/Frameworks/R.framework/Resources/library/MASS/DESCRIPTION to /var/ although I do not use MASS ( and all the other recently uninstalled packages). Any help ? TIA -- Christian W. Hoffmann CH - 8915 Hausen am Albis, Schweiz Rigiblickstrasse 15 b, Tel.+41-44-7640853 mailto: christ...@echoffmann.ch home: www.echoffmann.ch __ R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
[R] infix paste and package
Hi,
I can successfully define in .R and in R
%% - function(a,b) { paste(a,b,sep=) }
nd use in R
a %% b
[1] ab
but in a package definition .Rd
\name{pasteInfix}
\alias{pasteInfix}
\alias{\%\%
}
\usage{ a \%\% b
}
will fail in R CMD check --as-cran saying
I am %%
+ hungry # [1] I am hungry
Error: could not find function %%
Execution halted.
What is wrong in my .Rd file?
PS: The placement of the closing } and the escaping of % seem also
critical.
TIA Christian
--
Christian W. Hoffmann
Mathematiker
CH - 8915 Hausen am Albis, Schweiz
Rigiblickstrasse 15 b, Tel.+41-44-7640853
mailto: christ...@echoffmann.ch
home: www.echoffmann.ch
__
R-help@r-project.org mailing list
https://stat.ethz.ch/mailman/listinfo/r-help
PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
and provide commented, minimal, self-contained, reproducible code.
[R] was: 127.0.0.1:22381/doc/html/index.html hep.start won't start
Dear All, I narrowed down my problem to library(tcltk) in .First() which causes the freezing of R and Aquamacs running it. What could make tcltk behave in this way? Christian I am using Aquamacs 3.0a (GNU Emacs 24.3.50.2)with R3.0.3, newly installed: sessionInfo() --- R version 3.0.3 (2014-03-06) Platform: x86_64-apple-darwin10.8.0 (64-bit) locale: [1] C attached base packages: [1] stats graphics grDevices utils datasets methods base loaded via a namespace (and not attached): [1] compiler_3.0.3 tools_3.0.3 - The FIREWALL has nothing to do with it Has anyone seen this to happen, too? Christian __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
[R] 127.0.0.1:22381/doc/html/index.html hep.start won't start
Dear All, Sorry to bother you. I narrowed my problem to the function help.start() which causes the freezing of R by mill endlessly after M-x R waiting for 127.0.0.1:22381/doc/html/index.html to load. I am using Aquamacs 3.0a (GNU Emacs 24.3.50.2)with R3.0.3, newly installed: sessionInfo() --- R version 3.0.3 (2014-03-06) Platform: x86_64-apple-darwin10.8.0 (64-bit) locale: [1] C attached base packages: [1] stats graphics grDevices utils datasets methods base loaded via a namespace (and not attached): [1] compiler_3.0.3 tools_3.0.3 - The FIREWALL is responsible, deactivating will allow help.start()? Bur I don't want to work without the firewall!! Settingthe firewall for Firefox and Aquamacs to allow incoming connections (translated from German)will also not help. Thanks for considering. Christian __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
[R] 127.0.0.1:22381/doc/html/index.html won't start
Dear All, Sorry to bother you. I am using Aquamacs 3.0a (GNU Emacs 24.3.50.2), newly installed. Somehow, on my mac even the newly installed R3.0.3 will mill endlessly after M-x R waiting for 127.0.0.1:22381/doc/html/index.html to load. How can I find out, what is wrong with my configuration? Thanks for considering. Christian __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
[R] 127.0.0.1:22381/doc/html/index.html won't start 2.
Dear All, Sorry to bother you. I am using Aquamacs 3.0a (GNU Emacs 24.3.50.2), newly installed, on Mac OSX 10.7.5 . Somehow, on my mac even the newly installed R3.0.3 will mill endlessly after M-x R waiting for 127.0.0.1:22381/doc/html/index.html to load. How can I find out, what is wrong with my configuration? Thanks for considering. Christian __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
[R] history ?? 2 no readline ?
Hi, What could the cause of history() Error in savehistory(file) : no history available to save savehistory(file=myhist) Error in savehistory(file) : no history available to save save.image() be? I have the information in the attached gif Cheers Christian -- Christian W. Hoffmann, CH - 8915 Hausen am Albis, Switzerland Rigiblickstrasse 15 b, Tel.+41-44-7640853 c-w.hoffm...@sunrise.ch, christ...@echoffmann.ch, www.echoffmann.ch __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
[R] there is no package called 'boot'
Hi, R CMD mypackage /Users/hoffmann/R/cwhmisc check --as-cran gives me * checking Rd cross-references ... WARNING Error in find.package(package, lib.loc) : there is no package called 'boot' although there is no textual reference to 'boot' in my /R and /man within /cwhmisc nor any file of that name. How could I possibly find the culprit? TIA C. sessionInfo() R version 3.0.1 (2013-05-16) Platform: x86_64-apple-darwin10.8.0 (64-bit) locale: [1] C attached base packages: [1] tools tcltk stats4splines parallel datasets compiler [8] graphics grDevices stats grid utils methods base other attached packages: [1] survival_2.37-4spatial_7.3-6 rpart_4.1-1 nnet_7.3-6 [5] nlme_3.1-109 foreign_0.8-53 codetools_0.2-8 cluster_1.14.4 [9] class_7.3-7Matrix_1.0-12 MASS_7.3-26 KernSmooth_2.23-10 [13] cwhmisc_4.1lattice_0.20-15 -- Christian W. Hoffmann, CH - 8915 Hausen am Albis, Switzerland Rigiblickstrasse 15 b, Tel.+41-44-7640853 (!! c-w.hoffm...@sunrise.ch, will be eliminated in the near future, instead Bitte nicht mehr benutzen !!, stattdessen: ) mailto: christ...@echoffmann.ch home: www.echoffmann.ch __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
[R] chooseCRANmirror
Obviously, chooseCRANmirror() is run at every start. Can I permanently store my choice with q() and 'yes' ? Cheers Christian -- Christian W. Hoffmann, CH - 8915 Hausen am Albis, Switzerland Rigiblickstrasse 15 b, Tel.+41-44-7640853 c-w.hoffm...@sunrise.ch, christ...@echoffmann.ch, www.echoffmann.ch __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
[R] Aquamacs Preferences not showing, windows inaccessible, Scrolling not possible !!!
Hi, sorry for bothering, but I suspect the start of M-x R within Aquamacs is causing my problems: *Scrolling* is *not possible*, neither by key stroke nor by mouse. Aquamacs does not show all windows. 'Prefences', 'About A.', 'Check fo updates' will not open. Menu 'windows' shows several windows, but clicking on them will not open their buffers. Also, reinstallation of Aquamacs-2.4 (the newest version) did not help. What can I do? Christian -- Christian W. Hoffmann, CH - 8915 Hausen am Albis, Switzerland Rigiblickstrasse 15 b, Tel.+41-44-7640853 c-w.hoffm...@sunrise.ch, christ...@echoffmann.ch, www.echoffmann.ch __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
[R] R --no-readline ?, was: history and readline, Mac OSX
Hi, By chance I came across an iESS buffer showing that R had been started with this option: R --no-readline This seems to prevent the use of history() which I noticed earlier. Why is this start option chosen, and where can I change this? ESS version 5.13, R: sessionInfo() R version 2.15.2 (2012-10-26) Platform: x86_64-apple-darwin9.8.0/x86_64 (64-bit) locale: [1] C attached base packages: [1] tools tcltk stats4splines parallel datasets compiler [8] graphics grDevices stats grid utils methods base other attached packages: [1] survival_2.36-14 spatial_7.3-5 rpart_3.1-55 nnet_7.3-5 [5] nlme_3.1-105 mgcv_1.7-22 foreign_0.8-51 codetools_0.2-8 [9] cluster_1.14.3class_7.3-5 boot_1.3-7 Matrix_1.0-9 [13] MASS_7.3-22 KernSmooth_2.23-8 cwhmisc_4.0 lattice_0.20-10 -- Christian W. Hoffmann, CH - 8915 Hausen am Albis, Switzerland Rigiblickstrasse 15 b, Tel.+41-44-7640853 c-w.hoffm...@sunrise.ch, christ...@echoffmann.ch, www.echoffmann.ch __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
[R] .Rd vs. .R, matrix multiplication
Hi, I find it cumbersomesome the I have to use \%*\% in .Rd files vs. %*% in .R files. R CMD check will refuse %*% in .Rd files. I would like to have %*% in .Rd files to be able to execute expressions with matrix multiplication from .Rd files directly, but ESS (version 5.13) would refuse to execute this execution. What can be done here? TIA Christian -- Christian W. Hoffmann, CH - 8915 Hausen am Albis, Switzerland Rigiblickstrasse 15 b, Tel.+41-44-7640853 c-w.hoffm...@sunrise.ch, christ...@echoffmann.ch, www.echoffmann.ch __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
[R] install own package ?
what happens here: install.packages(/Users/hoffmann/R/cwhmisc_4.0.tar.gz,repos = NULL) Error: file '/Users/hoffmann/R/cwhmisc_4.0.tar.gz' is not an OS X binary package sessionInfo() R version 2.15.1 (2012-06-22) Platform: x86_64-apple-darwin9.8.0/x86_64 (64-bit) locale: [1] C attached base packages: [1] tools tcltk stats4splines parallel datasets compiler [8] graphics grDevices stats grid utils methods base other attached packages: [1] survival_2.36-14 spatial_7.3-3 rpart_3.1-53 nnet_7.3-1 [5] nlme_3.1-104 mgcv_1.7-18 foreign_0.8-50 codetools_0.2-8 [9] cluster_1.14.2class_7.3-3 boot_1.3-4 Matrix_1.0-6 [13] MASS_7.3-18 KernSmooth_2.23-7 cwhmisc_3.0 lattice_0.20-6 The .tar.gz has been generated by R CMD build, and is a source package, as suggested in the help. TIA Christian -- Christian W. Hoffmann, CH - 8915 Hausen am Albis, Switzerland Rigiblickstrasse 15 b, Tel.+41-44-7640853 c-w.hoffm...@sunrise.ch, christ...@echoffmann.ch, www.echoffmann.ch __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
[R] division giving spurious NA
Hi, I stumbled acros the following disturbing computation: x - matrix(c( 2.594028,0.8468867,NA,2.244600,1.215535,0.8233032,NA,3.176697,3.425393,2.5345225,NA,3.247219),nrow=3,byrow=TRUE) x # having NA in column3 only x[1:2,]/x[3,] ## [,1] [,2] [,3] [,4] [1,] 0.7572935 NA NANA [2,] 0.4795913 0.253541 NA 0.9782823 where do the two Nas in columns 2 and 4 come from? TIA Christian -- Christian W. Hoffmann, CH - 8915 Hausen am Albis, Switzerland Rigiblickstrasse 15 b, Tel.+41-44-7640853 c-w.hoffm...@sunrise.ch, christ...@echoffmann.ch, www.echoffmann.ch __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
[R] quartz.save of the FAQ (Mac)
Hi,
In the FAQ for Mac http://cran.r-project.org/bin/macosx/RMacOSX-FAQ.html
there is
7.2 Saving the image
You can can (???) the content of the quartz device window into a PDF file.
This is not explained!
This is a very simple way to export high quality graphics from R into
other applications on Mac OS X graphics is PDF based (so are almost all
applications available). However, this process uses R's PDF device and
not Mac OS X PDF facilities and thus doesn't yeild (???)
an exact copy of the device contents. For Mac-native solution, see (see
Copying the image into the clipboard
http://cran.r-project.org/bin/macosx/RMacOSX-FAQ.html#Copying-the-image-into-the-clipboard)
and quartz.save command.
7.3 Copying the image into the clipboard
You can copy the content of the quartz device window in the clipboard to
make the resulting image available for pasting into other applications.
The clipboard will contain both a PDF versiond (???) and a bitmap
version of the quartz device window. Which version will be used depends
on the pasting applications, most modern application will prefer the PDF
version which is of higher quality as it supports vector graphics.
In the menu bar of the quartz window 'Edit' the copy command is
active, but the is no choice in 'File' for saving the pdf !
Note that there is currently a difference between using the clipboard
and saving to a PDF file (see Saving the image
http://cran.r-project.org/bin/macosx/RMacOSX-FAQ.html#Saving-the-image).
The latter will use R's PDF device which will not yield WYSIWYG results.
However, using quartz.save ...
There is no function quartz.save in 2-15-1 !
Thanks for correcting the errors in the text and for enlighten me an
quartz.save.
Christian
PS I wrote the following function for saving the quartz window (thanks
\author{Ray Brownrigg \email{r...@mcs.vuw.ac.nz}):
pdfc - function (file = Rplot.pdf, ...) {
current.device - dev.cur()
dev.off(dev.copy(device = pdf, file = file, ...))
dev.set(current.device)
print(paste(file, generated.))
}
-- Christian W. Hoffmann, CH - 8915 Hausen am Albis, Switzerland
Rigiblickstrasse 15 b, Tel.+41-44-7640853 c-w.hoffm...@sunrise.ch,
christ...@echoffmann.ch, www.echoffmann.ch
[[alternative HTML version deleted]]
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PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
and provide commented, minimal, self-contained, reproducible code.
[R] history and readline, Mac OSX
Hi, Obviously history() will only work with readline installed: so far I have not been able to find working advice for installing and enabling readline on MacOSX. sessionInfo() R version 2.15.1 (2012-06-22) Platform: x86_64-apple-darwin9.8.0/x86_64 (64-bit) locale: [1] C attached base packages: [1] tools tcltk stats4splines parallel datasets compiler [8] graphics grDevices stats grid utils methods base other attached packages: [1] survival_2.36-14 spatial_7.3-3 rpart_3.1-53 nnet_7.3-1 [5] nlme_3.1-104 mgcv_1.7-18 foreign_0.8-50 codetools_0.2-8 [9] cluster_1.14.2class_7.3-3 boot_1.3-4 Matrix_1.0-6 [13] MASS_7.3-18 KernSmooth_2.23-7 cwhmisc_3.0 lattice_0.20-6 Who is willing to give me advice? TIA -- Christian -- Christian W. Hoffmann, CH - 8915 Hausen am Albis, Switzerland Rigiblickstrasse 15 b, Tel.+41-44-7640853 c-w.hoffm...@sunrise.ch, christ...@echoffmann.ch, www.echoffmann.ch __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
[R] history() does not work?
Hi, history() gives Error in savehistory(file) : no history available to save although I can scroll throu history with C^uparrow an C^downarrow. How can I make history() work and/or show the current history in a file, so that I can choose from previous commands? The web did not throw up anything useful. TIA --Christian -- Christian W. Hoffmann, CH - 8915 Hausen am Albis, Switzerland Rigiblickstrasse 15 b, Tel.+41-44-7640853 c-w.hoffm...@sunrise.ch, christ...@echoffmann.ch, www.echoffmann.ch __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
[R] Contacting Delphi ??
What does the sudden appearance of Contacting Delphi ..the oracle is unavailable. We apologize for any inconvenience. mean? A bug? It appears at plotting. Thanks Christian -- Christian W. Hoffmann, CH - 8915 Hausen am Albis, Switzerland Rigiblickstrasse 15 b, Tel.+41-44-7640853 c-w.hoffm...@sunrise.ch, christ...@echoffmann.ch, www.echoffmann.ch __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
[R] history() does not work? 2
Hi, history() gives Error in savehistory(file) : no history available to save although I can scroll throu history with C^uparrow an C^downarrow. How can I make history() work and/or show the current history in a *file*, so that I can choose from previous commands? The notion of having readline enabled: How can I do that on mac osx? I work with R version 2.15.1 (2012-06-22) Platform: x86_64-apple-darwin9.8.0/x86_64 (64-bit) TIA --Christian -- Christian W. Hoffmann, CH - 8915 Hausen am Albis, Switzerland Rigiblickstrasse 15 b, Tel.+41-44-7640853 c-w.hoffm...@sunrise.ch, christ...@echoffmann.ch, www.echoffmann.ch __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
[R] device error pdf
Hi,
Iwrote 'pdfc' in analogy to 'lpr':
pdfc - function (file = Rplot.pdf) {
current.device - dev.cur()
dev.off(dev.copy(device = pdf, file = file, ...))
dev.set(current.device)
print(paste(file, generated.))
}
lpr - function (object, file = Rplotlpr.ps, ...)
{
if (missing(object)) {
current.device - dev.cur()
dev.off(dev.copy(device = postscript, file = file, ...))
dev.set(current.device)
system(paste(lpr, file))
print(paste(file, printed.))
}
else {
if (missing(file))
file - Robjlpr.txt
sink(file)
object - as.character(substitute(object))
print(get(object))
sink()
system(paste(lpr, file))
print(paste(object, printed.))
}
}
Now, while
lpr()
[1] Rplotlpr.ps printed.
is working almost fine (the plot window of Quartz-2 is not sized correctly,
what would you suggest, Ray Brownrig \email{r...@mcs.vuw.ac.nz} ?),
with pdfc()
I get
Error in dev.off(dev.copy(device = pdf, file = file, ...)) :
'...' used in an incorrect context
I searched the Web, but found no hint how to avoid this error. So the culprit
could be
device = pdf
On the other hand executing
pdf()
generates the file
Rplotlpr.ps
but this very small and causes the Adobe Reader to say
This file is damaged and cannot be opened.
Thanks for help.
Chirsitan HOffmann
--
Christian W. Hoffmann,
CH - 8915 Hausen am Albis, Switzerland
Rigiblickstrasse 15 b, Tel.+41-44-7640853
c-w.hoffm...@sunrise.ch,
christ...@echoffmann.ch,
www.echoffmann.ch
__
R-help@r-project.org mailing list
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PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
and provide commented, minimal, self-contained, reproducible code.
[R] R CMD check and browser
Hi, Every time I do system(R CMD check mypackckage the process executes a help.start(). Why does this happen? Cheers Christian -- Christian W. Hoffmann, CH - 8915 Hausen am Albis, Switzerland Rigiblickstrasse 15 b, Tel.+41-44-7640853 c-w.hoffm...@sunrise.ch, christ...@echoffmann.ch, www.echoffmann.ch __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
[R] Sweave Error: c('...Rnw', '...Rnw') is not ASCII and does not declare an encoding
Sorry to bother everyone. What has changed in Sweave since 2009?
Sweave(Crs.Rnw)
Error: c('Crs.HdrFct.Rnw', 'Crs.Rnw') is not ASCII and does not
declare an encoding
No error in 2009 with the same files.
heers
Christian
--
Christian W. Hoffmann,
CH - 8915 Hausen am Albis, Switzerland
Rigiblickstrasse 15 b, Tel.+41-44-7640853
c-w.hoffm...@sunrise.ch,
christ...@echoffmann.ch,
www.echoffmann.ch
__
R-help@r-project.org mailing list
https://stat.ethz.ch/mailman/listinfo/r-help
PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
and provide commented, minimal, self-contained, reproducible code.
[R] history ??
Hi, What could the cause of history() Error in savehistory(file) : no history available to save savehistory(file=myhist) Error in savehistory(file) : no history available to save save.image() be?. Cheers Christian -- Christian W. Hoffmann, CH - 8915 Hausen am Albis, Switzerland Rigiblickstrasse 15 b, Tel.+41-44-7640853 c-w.hoffm...@sunrise.ch, christ...@echoffmann.ch, www.echoffmann.ch __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
[R] Package cwhmisc and problems
Hi,
I have revised my package cwhmisc and want to re-submit it (meeting a
deadline soon). One big stumbling stone is the 'sudden' appearance of
sessionInfo()
R version 2.15.1 (2012-06-22)
Platform: x86_64-apple-darwin9.8.0/x86_64 (64-bit)
locale:
[1] C
attached base packages:
[1] tools tcltk stats4splines parallel datasets compiler
[8] graphics grDevices stats grid utils methods base
other attached packages:
[1] survival_2.36-14 spatial_7.3-3 rpart_3.1-53 nnet_7.3-1
[5] nlme_3.1-104 mgcv_1.7-18 foreign_0.8-50
codetools_0.2-8
[9] cluster_1.14.2class_7.3-3 boot_1.3-4Matrix_1.0-6
[13] MASS_7.3-18 KernSmooth_2.23-7 cwhmisc_3.0 lattice_0.20-6
system(R CMD check /Users/hoffmann/R/cwhmisc)
* using log directory
'/Users/hoffmann/Projects/LtoQ/Mathematics/cwhmisc.Rcheck'
* using R version 2.15.1 (2012-06-22)
* using platform: x86_64-apple-darwin9.8.0 (64-bit)
* using session charset: ASCII
* checking for file 'cwhmisc/DESCRIPTION' ... OK
* this is package 'cwhmisc' version '3.1'
* checking package namespace information ... OK
* checking package dependencies ...Error in if (x2 != x1) { : missing
value where TRUE/FALSE needed
Execution halted
Grep-ing my source directory for '(x2 != x1)' does not find anything, so
I guess this is a message internal to R CMD check, namely in
package dependencies“ .
This error appeared so suddenly during a run of R CMD check's that I
have no explanation, I beg to ask to give me a pointer to how to
circumvent this block. I can send you my whole source of *.R and *.Rd
files if that can be of any help.
Thanks for assisting me (r-devel has so far not answered my request)
Christian Hoffmann
--
Christian W. Hoffmann,
CH - 8915 Hausen am Albis, Switzerland
Rigiblickstrasse 15 b, Tel.+41-44-7640853
c-w.hoffm...@sunrise.ch,
christ...@echoffmann.ch,
www.echoffmann.ch
__
R-help@r-project.org mailing list
https://stat.ethz.ch/mailman/listinfo/r-help
PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
and provide commented, minimal, self-contained, reproducible code.
[R] start.help() and browser
Hi, when calling help.start() I get the message sh: firefox: command not found and the help system is inaccessible (which is an absolute nuisance, but bypassable under http://stat.ethz.ch/R-manual/R-patched/library/) I have no idea what is broken in my system and I didn'n find any pointer in the archives(my search skills may be deficient..) My sessionInfo(): R version 2.14.0 (2011-10-31) Platform: x86_64-apple-darwin9.8.0/x86_64 (64-bit) locale: [1] C attached base packages: [1] tools tcltk stats4splines parallel grid datasets [8] compiler graphics grDevices stats utils methods base other attached packages: [1] survival_2.36-10 spatial_7.3-3 rpart_3.1-50 nnet_7.3-1 [5] nlme_3.1-102 mgcv_1.7-9foreign_0.8-46codetools_0.2-8 [9] cluster_1.14.1class_7.3-3 boot_1.3-3Matrix_1.0-1 [13] MASS_7.3-16 KernSmooth_2.23-6 cwhmisc_3.0 lattice_0.20-0 Warning message: 'DESCRIPTION' file has 'Encoding' field and re-encoding is not possible IS THIS ESSENTIAL ?? I would appreciate help very much Christian -- Christian W. Hoffmann, Rigiblickstrasse 15 b, CH-8915Hausen am Albis, Switzerland, Tel +41-44-7640853, c-w.hoffm...@sunrise.ch www.wsl.ch/personal_homepages/hoffmann/ __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
[R] Aquamacs/emacs and color of echo in R console
Hi I have been unable to find information on the following problem: All the text in my *R* window is shown in light red, starting after the echo This is mgcv 1.5-6 . For overview type , the following `help(mgcv-package)' is already in the light red. This color annoys me because I need more contrast, and it is even worse for use with a beamer. In the options menu I can open Appearance and then Foreground color for comint mode, but apart from the [quit] in the upper left corner I can see no hint how to make a choice, let alone make it permanent. Or will I have to try Appearance Customize Aquamacs? M-x color-theme-select opens an empty frame with nothing to select from (Hint given in http://www.emacswiki.org/emacs/AquamacsFAQ) What am I missing? Thanks for help. C.Hoffmann -- Dr. Christian W. Hoffmann, Swiss Federal Research Institute WSL Zuercherstrasse 111, CH-8903 Birmensdorf, Switzerland Tel +41-44-7392-277 (office), -111(exchange), -215 (fax) christian.hoffm...@wsl.ch, www.wsl.ch/personal_homepages/hoffmann/ Jene, die grundlegende Freiheit aufgeben wuerden, um eine geringe voruebergehende Sicherheit zu erwerben, verdienen weder Freiheit noch Sicherheit. - Benjamin Franklin __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
[R] Aquamacs/emacs and color of echo in R console 2!
Hi Sorry, I forgot to state the version: GNU Emacs 22.3.1 I have been unable to find information on the following problem: All the text in my *R* window is shown in light red, starting after the echo This is mgcv 1.5-6 . For overview type , the following `help(mgcv-package)' is already in the light red. This color annoys me because I need more contrast, and it is even worse for use with a beamer. In the options menu I can open Appearance and then Foreground color for comint mode, but apart from the [quit] in the upper left corner I can see no hint how to make a choice, let alone make it permanent. Or will I have to try Appearance Customize Aquamacs? M-x color-theme-select opens an empty frame with nothing to select from (Hint given in http://www.emacswiki.org/emacs/AquamacsFAQ) What am I missing? Thanks for help. C.Hoffmann -- Dr. Christian W. Hoffmann, Swiss Federal Research Institute WSL Zuercherstrasse 111, CH-8903 Birmensdorf, Switzerland Tel +41-44-7392-277 (office), -111(exchange), -215 (fax) christian.hoffm...@wsl.ch, www.wsl.ch/personal_homepages/hoffmann/ Jene, die grundlegende Freiheit aufgeben wuerden, um eine geringe voruebergehende Sicherheit zu erwerben, verdienen weder Freiheit noch Sicherheit. - Benjamin Franklin __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
[R] get.gpar, grid.Call
Hi I have been unable to find information on the following problem: Error in get.gpar(): unable to find function grid.Call Reinstalling R-2.10.0, platform: i386-pc-mingw32 did not help. Before this message there was a get.gpar missing. We then transported the source code from another machine and source()-ed it. Any ideas. It seems to belong in the base package, but this is unavailable for install.packages or update.packages. Thanks for help. C.Hoffmann -- Dr. Christian W. Hoffmann, Swiss Federal Research Institute WSL Zuercherstrasse 111, CH-8903 Birmensdorf, Switzerland Tel +41-44-7392-277 (office), -111(exchange), -215 (fax) christian.hoffm...@wsl.ch, www.wsl.ch/personal_homepages/hoffmann/ Jene, die grundlegende Freiheit aufgeben wuerden, um eine geringe voruebergehende Sicherheit zu erwerben, verdienen weder Freiheit noch Sicherheit. - Benjamin Franklin __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
[R] Simulation of linear lists
Hi there
has anybody experimented with the implementation in R of linear lists,
as described e.g. in books on Pascal (Jensen and Wirth), or Wirth,
Algorithms and data structures ? See
\url{www.dbnet.ece.ntua.gr/~adamo/csbooksonline/AD.pdf }
Pointers would be welcome.
Christian
--
--
Christian W. Hoffmann,
Rigiblickstrasse 15 b, CH-8915Hausen am Albis, Switzerland,
Tel +41-44-7640853, c-w.hoffm...@sunrise.ch
__
R-help@r-project.org mailing list
https://stat.ethz.ch/mailman/listinfo/r-help
PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
and provide commented, minimal, self-contained, reproducible code.
[R] How to retrieve a method
Hi there, I am interested in the inner workings of wilcox.test: wilcox.test function (x, ...) UseMethod(wilcox.test) environment: namespace:stats how can I get at the code, if it is R-code? For Methods one should be able to learn what extension to use, but here default or such do not help. Is there a wayplot.default to learn which different versions of plot there are except trying plot.lm, ... best -c -- Dr. Christian W. Hoffmann, Swiss Federal Research Institute WSL Zuercherstrasse 111, CH-8903 Birmensdorf, Switzerland Tel +41-44-7392-277 (office), -111(exchange), -215 (fax) [EMAIL PROTECTED], www.wsl.ch/personal_homepages/hoffmann/ Jene, die grundlegende Freiheit aufgeben wuerden, um eine geringe voruebergehende Sicherheit zu erwerben, verdienen weder Freiheit noch Sicherheit. - Benjamin Franklin -- Christian W. Hoffmann, Rigiblickstrasse 15 b, CH-8915Hausen am Albis, Switzerland, Tel +41-44-7640853, [EMAIL PROTECTED] __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
