thank u so much for ur help,,i have tried it before,,and succeded to do
so,,the problem is that, in the next stage of the package i am facing a
problem which i dont know how to fix,,,i am useing cnvpack (
http://www.meb.ki.se/~yudpaw/) and in the following command i get an
error,,which is..
cnvr-setreg(out,anno.list= myann,pheno.data= mypheno,high.conf= NA,LIM=
2,method= COVER, cnv.abnormality= both)
Error in setreg(out, anno.list = myann, pheno.data = mypheno, high.conf =
NA, :
NAs in foreign function call (arg 4)
i then manipulate my data (out) and made high.conf=0, then it shows me
this error...
cnvr-setreg(out,anno.list= myann,pheno.data= mypheno,high.conf=0,LIM=
2,method= COVER, cnv.abnormality= both)
Error in st[ii]:en[ii] : NA/NaN argument
Ilyas
On Tue, Oct 13, 2009 at 1:32 AM, joris meys jorism...@gmail.com wrote:
As the error says, you have different row numbers in your variables.
The variable $Chromosome has no values.
try :
ann - data.frame( ann [-3] )
Cheers
Joris
On Mon, Oct 12, 2009 at 8:29 AM, Ilyas . mykh...@gmail.com wrote:
i have two RData files,,i want to print them to check the format of the
tables in these files,,,i can load both the files and can read it as well
load('ann.RData')
str(ann)
List of 4
$ Name : chr [1:561466] rs3094315 rs12562034 rs3934834
rs9442372 ...
$ Position : int [1:561466] 742429 758311 995669 1008567 1011278
1011521
1020428 1021403 1038818 1039813 ...
$ Chromosome: chr(0)
$ Chr.num : num [1:561466] 1 1 1 1 1 1 1 1 1 1 ...
but when i try to display all the table by using the R commander.i have
got
the display of 'pheno.RData' file,,but the other file 'ann.RData' show me
an
error i.e.
ann - as.data.frame(ann)
Error in data.frame(Name = c(rs3094315, rs12562034, rs3934834,
rs9442372, :
arguments imply differing number of rows: 561466, 0
i am sending you both files,,,hope u will help me solve this problm
Ilyas
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