Re: [R] Help with transpose please.
Please check out tidyr package and use commands like spread/ gather which would
make data wide or long
> On Jun 22, 2018, at 07:43, Bill Poling wrote:
>
> Good morning.
>
>
> I have data in the form:
>
> head(Edit041IA, n=25)
> ClaimServiceID ClaimID DiagnosisCode
> 1 183056004 78044473 C562
> 2 183056004 78044473 C778
> 3 183056004 78044473 C784
> 4 183056004 78044473 C786
> 5 183056004 78044473 C7961
> 6 183056004 78044473 C7982
> 7 183056004 78044473 C7989
> 8 183056008 78044473 C562
> 9 183056008 78044473 C778
> 10 183056008 78044473 C784
> 11 183056008 78044473 C786
> 12 183056008 78044473 C7961
> 13 183056008 78044473 C7982
> 14 183056008 78044473 C7989
> 15 183139945 78078925M79606
> 16 183139945 78078925 M7989
> 17 183139945 78078925 R600
> 18 183236728 78119632H02831
> 19 183236728 78119632H02832
> 20 183236728 78119632H02834
> 21 183236728 78119632H02835
> 22 183236728 78119632H04123
> 23 183236728 78119632 Z411
> 24 183236728 78119632 H2513
> 25 183236728 78119632H43813
>
> And wish to transpose to single record for single claimServiceID, ClaimID,
> and Dx1,Dx2,Dx3, etc:
>
> There can be multiple claimServiceIDs for a ClaimID so I want the unique
> ClaimServiceID as the identifier when I join this data back into a longer
> single record length file by that column.
>
>claimServiceID ClaimID Dx1 Dx2Dx3 ...etc
> 1 18305600478044473 C562 C778 C784 C786 C7961 ...etc
> 2 18305600878044473 C562 C778 C784 C786 C7961 ...etc
>
>
> (If you would prefer the complete dput of the 1272 records I will gladly
> provide .Names = c("ClaimServiceID",
>
> "ClaimID", "DiagnosisCode"), class = "data.frame", row.names = c(NA,
>
> -1272L))
>
>
>
> At the moment the classes are:
>
> classes <- as.character(sapply(Edit041IA, class))
>
> classes
>
> # [1] "integer" "integer" "character" <---but do not have to be if that
> helps its just that's how the csv load pulled them in
>
> The max number of columns based on this transpose of the DiagnosisCode column
> (in this dataset) is 12 if that is important to know.
>
> I have looked at a variety of webpages and cannot get this right,
>
> dta2 <- melt(dta1, id=c("ClaimServiceID","ClaimID"))
> View(dta2)
> # https://www.r-bloggers.com/pivot-tables-in-r/
>
> #
> https://stackoverflow.com/questions/18449938/pivot-on-data-table-similar-to-rehape-melt-function
>
>
> dta3 <- cast(Edit041IA, ClaimServiceID ~ DiagnosisCode, ClaimID)
> View(dta3)
> dta3 <- cast(Edit041IA, DiagnosisCode ~ ClaimServiceID, ClaimID)
> View(dta3)
>
> dta3 <- melt(Edit041IA, id=c("ClaimServiceID"))
> View(dta3)
>
> dta3 <- aggregate(Edit041IA, by=list(ClaimServiceID, ClaimID, DiagnosisCode))
> View(dta3)
>
>
> dta3 <- aggregate(Edit041IA, by=list(ClaimServiceID))
> View(dta3)
> # https://www.r-statistics.com/tag/transpose/
>
> dta3 <- aggregate(Edit041IA, by=list(DiagnosisCode, ClaimServiceID, ClaimID))
> View(dta3)
>
>
> I am sure it's a basic, simple procedure, but I am pressed for time on this
> one, any support will be greatly appreciated, thank you.
>
> WHP
>
>
>
>
>
> Confidentiality Notice This message is sent from Zelis. ...{{dropped:15}}
>
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> and provide commented, minimal, self-contained, reproducible code.
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[R] Medical risk package calculation RSI
Hi all,
I'm using the medical risk package to determine the risk stratification Index
based on the ICD9 codes. Although, I have been successful in using it, I'm
unable to interpret the output.
here is the sample code
# Calculate RSI for each patient ("id") in dataframe
cases <- data.frame(id=c(1,1,1,2,2,2,2,2),
+
icd9cm=c("D4019","D25000","DV707","D71945","DV4365","D78079","D70909","D1958"))
library(plyr)
ddply(cases, .(id), function(x) { icd9cm_sessler_rsi(x$icd9cm) } )
Output:
id rsi_1yrpod rsi_30dlos rsi_30dpod rsi_inhosp
1 1 -0.2860474 1.2481208 -0.5722244 -0.2612804
2 2 0.1417417 0.9779779 -1.0318395 0.000
Could anyone please help me?
Thanks,
Ramesh
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[R] Help with SQLsave
Hi all, I'm using RODBC library to connect to a database. I'm trying to read a table from a database and after manipulating it would like to write to the same database but with a different table P<-data.frame(sqlQuery(myconn,'select * from Demographics')) sqlSave(myconn,p,tablename="trial",rownames=FALSE) I'm gettng this error Version:1.0 StartHTML:000107 EndHTML:001014 StartFragment:000127 EndFragment:000996 Error in sqlSave(myconn, p, tablename = "trial", rownames = FALSE) : [RODBC] Failed exec in Update 22018 0 [Microsoft][ODBC Driver 11 for SQL Server]Invalid character value for cast specification Thanks, Ramesh __ R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
[R] Help with dates
Hi all, I’m struggling to get the dates in proper format. I have dates as factors and is in the form 02/27/34( 34 means 1934). If I use as.Date with format %d%m%y it gets converted to 2034-02-27. I tried changing the origin in the as.Date command but nothing worked. Any help is appreciated. Thanks, Ramesh __ R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
[R] Data Import to R
While importing .csv files into R, all data are converted to factor-by default. But, how can I preserve the original format of the data like numeric to numeric, integer to integer, character to character etc while importing from csv to R environment. I tried several ways, no thing helps. I used 'stringsAsFactor = FALSE' command, it did convert all data to characters. But, I wanted to preserve the numeric data to be in integer or double. Any idea? examples? Thanks [[alternative HTML version deleted]] __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
Re: [R] Kindly help me
Thanks lot again to all. On Wed, Apr 30, 2014 at 2:32 PM, Rui Barradas ruipbarra...@sapo.pt wrote: Hello, The package is Zelig, not zelig, R is case sensitive. Try install.packages(Zelig, dependencies = TRUE) And can't you update your version of R? It's now R 3.1.0. Hope this helps, Rui Barradas Em 29-04-2014 19:30, Ramesh Das escreveu: Dear all, I have a problem in installing the the package zelig. I have window 32 bit operating system and R- 3.0.1 version. zelig' package is not compatible with R-3.0.1 version. Please help me how to install the package zelig . If any other package is available in replace of zelig', kindly suggest me. [[alternative HTML version deleted]] __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/ posting-guide.html and provide commented, minimal, self-contained, reproducible code. [[alternative HTML version deleted]] __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
[R] systemfit package is not compatible with R-3.0.2 version.
Dear all, I am in problem for installing the package systemfit in R-3.0.2 version. The error message is showing is as mentioned below. Now there is R-3.0.2 version is there. so kindly anyone help me to solve this problem. Warning in install.packages : package âsystemfit â is not available (for R version 3.0.2) Loading required package: Matrix Error in loadNamespace(j - i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : there is no package called âlatticeâ In addition: Warning messages: 1: package âsystemfitâ was built under R version 3.0.3 2: package âMatrixâ was built under R version 3.0.3 Error: package âMatrixâ could not be loaded [[alternative HTML version deleted]] __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
[R] Kindly help me
Dear all, I have a problem in installing the the package zelig. I have window 32 bit operating system and R- 3.0.1 version. zelig' package is not compatible with R-3.0.1 version. Please help me how to install the package zelig . If any other package is available in replace of zelig', kindly suggest me. [[alternative HTML version deleted]] __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
[R] Kindly help me
Dear all, I have a problem in installing the the package zelig. I have window 32 bit operating system and R- 3.0.1 version. zelig' package is not compatible with R-3.0.1 version. Please help me how to install the package zelig . If any other package is available in replace of zelig', kindly suggest me. [[alternative HTML version deleted]] __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
[R] Kindly help me
Dear all, I have a problem in installing the the package zelig. I have window 32 bit operating system and R- 3.0.1 version. zelig' package is not compatible with R-3.0.1 version. Please help me how to install the package zelig . If any other package is available in replace of zelig', kindly suggest me. [[alternative HTML version deleted]] __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
[R] need help to convert in to panel data format
Dear All, The data format is like this Company 2001 2001 2001 2002 2002 2002 2003 2003 2003 2004 2004 2004 3M India Ltd. 1160.2 2082.7 67.1 1094.3 1069.9 221.6 1160.2 2082.7 67.1 1094.3 1069.9 221.6 A B B India Ltd. 7758 7932.8 698.2 7205.4 7617.3 1272.5 7758 7932.8 698.2 7205.4 7617.3 1272.5 Aditya Birla Nuvo Ltd. 11871.4 15259.5 1571.9 10834.1 18851.3 7430.7 11871.4 15259.5 1571.9 10834.1 18851.3 7430.7 Alstom T D India Ltd. 4182.5 4035.3 -25.4 4279.5 3812.1 770.2 4182.5 4035.3 -25.4 4279.5 3812.1 770.2 B A S F India Ltd. 3799.9 4194.6 416.1 3420.5 3557.7 1406.3 3799.9 4194.6 416.1 3420.5 3557.7 1406.3 Balmer Lawrie Co. Ltd. 6987.2 7445.8 4.1 7215.4 5750.5 1695.6 6987.2 7445.8 4.1 7215.4 5750.5 1695.6 Bhilai Engineering Corpn. Ltd. 1501.1 1378.1 152.3 1370.6 1227.4 175.1 1501.1 1378.1 152.3 1370.6 1227.4 175.1 Bombay Burmah Trdg. Corpn. Ltd. 1846.9 1607.6 3.8 1947.5 2411.3 683.4 1846.9 1607.6 3.8 1947.5 2411.3 683.4 Clariant Chemicals (India) Ltd. 3346.5 3520.1 512.2 2951.3 2691.9 901.6 3346.5 3520.1 512.2 2951.3 2691.9 901.6 would some one help to convert into panel data format. Thanks and regards Ramesh Chandra Das Doctoral Student Vinod Gupta School of Management Indian Institute of Technology, Kharagpur, West Bengal, India, PIN - 721 302 Phone: 91+ 9002883115 [[alternative HTML version deleted]] __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
[R] why warnings message is there after running the plm regression
beer - read.csv(C:/Users/Administrator/Desktop/beer.csv)
View(beer) attach(beer)The following objects are masked from chem_1:
C_SALE, CFO, Company, DISEX, PPE, REV, ROA, SALE, TA, TAC, Year
library(plm) y-cbind(TAC) x-cbind(TA,REV,PPE,ROA)
pdata-plm.data(beer,index=c(Company,Year))
pooling-plm(y~x,data=pdata,model=pooling) summary(pooling)Oneway
(individual) effect Pooling Model
Call:
plm(formula = y ~ x, data = pdata, model = pooling)
Balanced Panel: n=14, T=10, N=140
Residuals :
Min. 1st Qu. Median 3rd Qu. Max.
-3.7 -0.20500 -0.00497 0.19400 1.16000
Coefficients :
Estimate Std. Error t-value Pr(|t|)
(Intercept) -0.048250 0.094661 -0.5097 0.6110848
xTA -68.865413 25.424371 -2.7086 0.0076314 **
xREV 0.363786 0.092291 3.9417 0.0001293 ***
xPPE 0.551753 0.202364 2.7265 0.0072501 **
xROA 0.953009 0.031102 30.6414 2.2e-16 ***
---
Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
Total Sum of Squares:426.26
Residual Sum of Squares: 32.02
R-Squared : 0.92488
Adj. R-Squared : 0.89185
F-statistic: 415.539 on 4 and 135 DF, p-value: 2.22e-16Warning
messages:1: In if (is.na(le)) { :
the condition has length 1 and only the first element will be
used2: In if (is.na(le)) __no length(.)__ else if (give.length) {
:
the condition has length 1 and only the first element will be
used3: In if (le 0) paste0([1:, paste(le), ]) else (0) :
the condition has length 1 and only the first element will be used
After running I found this warnings message. would some help me to find
out this problem.
Ramesh Chandra Das
Doctoral Student
Vinod Gupta School of Management
Indian Institute of Technology, Kharagpur,
West Bengal, India, PIN - 721 302
Phone: 91+ 9002883115
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[R] duplicate couples (time-id) Error in pdim.default(index[[1]], index[[2]]) :
Sir, can you solve my problem. I did not get why this type of problem is there. duplicate couples (time-id)Error in pdim.default(index[[1]], index[[2]]) : Thanks and regards Ramesh Chandra Das Doctoral Student Vinod Gupta School of Management Indian Institute of Technology, Kharagpur, West Bengal, India, PIN - 721 302 Phone: 91+ 9002883115 [[alternative HTML version deleted]] __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
Re: [R] assigning cluster id in cluster package-reg.
Dear Sir, Thanks a lot for your reply. I have some doubts as follows, please clarify me... I am using codes from your reply (ck3 - cutree(ag.ag, k = 3)) ## In this step we are cutting the tress and getting cluster assignments, on what basis you assigned k=3? (ch6 - cutree(as.hclust(ag.ag), h = 6)) ### In this step what we are doing? What is h=6?? In what basis you assigned this value? stopifnot(identical(unname(ch6), ck3)) ## what we are doing here? Moreover i got the error like this ERROR: identical(unname(ch6), ck3) is not TRUE I tried lot in 'cluster' user manual but i couldn't able to find any answer for my doubts. Please suggest good articles or manuals in this area for more information, please. Thanks in advance Thanking you yours sincerely, Ramesh On Wed, Apr 24, 2013 at 2:53 AM, Martin Maechler maech...@stat.math.ethz.ch wrote: Well, you don't give much of an example I'm replying CC to the R mailing list. Please ask questions there, rather than adressing individuals for basic help. Here is one; does it answer your question ? data(agriculture) ag.ag - agnes(agriculture) class(ag.ag) pltree(ag.ag) # the dendrogram, if you want to see it ## cut the dendrogram - get cluster assignments: (ck3 - cutree(ag.ag, k = 3)) (ch6 - cutree(as.hclust(ag.ag), h = 6)) stopifnot(identical(unname(ch6), ck3)) On Tue, Apr 23, 2013 at 6:37 PM, Ramesh krishnan Ramasamy ramesh...@gmail.com wrote: Dear sir, I have large dataset of around 5,000 entries, so, i cant draw hierarchical cluster and see the position of accession in the cluster. So, is it possible to assign cluster id to the acc automatically in the cluster package? For example cluster Id no . I... II III I am very new to cluster package, so please help me to do this. Thanking you Regards Ramesh -- Ramesh krishnan R Junior Research Fellow Molecular Biology Lab-1 Central Sericultural Research Training Institute Ministry of Textiles, Govt. of India Srirampura, Manadavadi road Mysore - 570 008 Mobile: +91 8951696997, +91 7502533038 Email: ramesh...@gmail.com -- Ramesh krishnan R Junior Research Fellow Molecular Biology Lab-1 Central Sericultural Research Training Institute Ministry of Textiles, Govt. of India Srirampura, Manadavadi road Mysore - 570 008 Mobile: +91 8951696997, +91 7502533038 Email: ramesh...@gmail.com [[alternative HTML version deleted]] __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
[R] SQL PL/SQL
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[R] How to Remove Autocorrelation from Simple Moving Average time series
Hi R experts,
I am trying to remove autocorrelation from Simple Moving Average time series. I
know that this can be done by using seasonal ARIMA like,
library(TTR)
data - rnorm(252)
n=21
sma_data=SMA(data,n)
sma_data=sma_data[-1:-n]
acf(sma_data,length(sma_data))
arima=arima(sma_data,c(0,0,0),seasonal = list(order = c(0,
0,n)));tsdiag(arima,100);arima$aic;
But is there any easy way that we can do in excel?? (Like differencing, dummy
variable approach etc)
Thanks and Regards,
Ramesh Kallol | Amba Research
Ph +91 80 3980 8467 | Mob +91 9019720734
Bangalore * Colombo * London * New York * San José * Singapore *
www.ambaresearch.com http://www.ambaresearch.com/
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[R] Fitting data to Pareto distribution
Dear All, I am trying to fit some data to a Pareto distribution and would like to estimate the parameters with the fitting. I have come across some options so far. Unfortunately I haven't managed to get any of them to make the right fits (as is evident when I check with the goodness of fit). One such option is: library(VGAM) b1 - read.table(file(FitPareto_Values.txt, encoding=latin1)) b2 - as.vector(t((b1[2]))) fit = vglm(b2 ~ 1, pareto1, trace=TRUE) With this code, R returns a coefficient for the intercept in the Pareto distribution as (-1.434) and this doesn't make any practical sense for the scenario that I am trying to model. Could anyone tell me where I could be going wrong? Or could you suggest alternative ways of fitting such data? Any help would be deeply appreciated! Thanks in advance! [[alternative HTML version deleted]] __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
