[R] calibration plot labels
Dear all, when i do the calibration plot, i put the x label y label , there is some labels are i did not put it , like resample optimism added ... i want to get rid of the these label , is any body know how can i get rid of these label. these are the following command i used cal - calibrate(f, u=12, method=c(boot), B=100,m=70, data=a1) plot(cal,xlab=Predicted Survival, ylab=Actual Survival) thanks Paaveen [[alternative HTML version deleted]] __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
[R] c-statiscs 95% CI for cox regression model
Dear all, how can i do the calculate the C-statistics 95% confidences interval for the cox regression model. Thanks very much for your any help. Paaveenthan _ [[elided Hotmail spam]] [[alternative HTML version deleted]] __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
[R] competing risk analysis
Deart All, I am doing competing risk analysis, I am tring store the estimate value in bbb but it gives error, it's anybody knows how to store in estimated value. Thanks Paaveen xx - cuminc(wkdt$fu.year, wkdt$status) bbb - cuminc.est(xx,F) Error in cuminc.est: Argument number 2 not matched: cuminc.est(xx, F) cuminc.est(xx) [1] Competing-OtrMrt: 38/171 patients estimated lower(95%) upper(95%) 0 0.00 0.00 0.00 1 5.65 2.05 9.25 2 6.39 2.53 10.25 3 7.23 3.07 11.39 4 12.04 6.32 17.75 5 18.53 11.23 25.83 6 22.39 14.21 30.58 7 26.87 17.69 36.05 8 33.08 22.27 43.89 9 41.92 29.47 54.38 10 41.92 29.47 54.38 11 41.92 29.47 54.38 12 45.61 31.90 59.31 13 49.58 34.70 64.45 [1] Competing-CssMrt: 3/171 patients estimated lower(95%) upper(95%) 0 0.00 0.00 0.00 1 0.00 0.00 0.00 2 1.48 -0.56 3.53 3 1.48 -0.56 3.53 4 1.48 -0.56 3.53 5 1.48 -0.56 3.53 6 2.80 -0.48 6.07 7 2.80 -0.48 6.07 8 2.80 -0.48 6.07 9 2.80 -0.48 6.07 10 2.80 -0.48 6.07 11 2.80 -0.48 6.07 12 2.80 -0.48 6.07 13 2.80 -0.48 6.07 _ [[alternative HTML version deleted]] __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
[R] Brier's score for bootstrap sample (coxph)
Dear all, How can i get brier's score for the bootsrap sample for survival analysis. this are the code i am using for the validation. f1 - cph(Surv(time,dead ) ~ strata(x1)+strata(x2)+strata(x3), x=TRUE, y=TRUE, surv=TRUE, time.inc=12, data=new) validate(f1,B=200,u=12,dxy=T) Thanks Paaveen _ [[alternative HTML version deleted]] __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
[R] bagging survival tree
Dear R users, I have problem with bagging survial tree after finding the final tree. f-rpart(Surv(time ,dead )~ x1 +x2+ x3+x4+x5+x6, data=crp) f.prun-prune(f,cp=0.036701) # final tree i have 3 endnote including #the variable x3 and x4 how can i use the bagging code i use like this but it did not work bagging(f_cp, nbagg=25, data=crp) library(ipred) sbundle - list(list(model = coxph, predict = predict)) errorest(Surv(time ,dead )~x1 +x2+ x3+x4+x5+x6, data=crp, model = bagging, nbagg = 100, comb = sbundle, control = rpart.control(minsplit = 2, xval = 0, cp = 0.03670131 )) Thanks very much Paaveen _ Take your contacts everywhere [[alternative HTML version deleted]] __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
[R] removing text form the graph(outer region)
Dear R communities, when i do a calibration plot i have text inside the graph bottom left and right (outer region) saying x resampling added B=200, i want to get rid of this texts please advise me how can i do it Thanks very much Paaveen _ Take your contacts everywhere [[alternative HTML version deleted]] __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
[R] remove text from the calibration plot
Dear all, how can i get rid of the text in the calibration plot below the x-axis. thanks Paaveen _ Check your Hotmail from your phone. [[alternative HTML version deleted]] __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
[R] Cox Calibration regression test double graphs
Dear All, How can i do the bootstrap and calibration plot after surival analysis , i don't know how to do it after that please help me. Thanks here is my syntex library(survival) mfit - survfit(Surv(days, status == 1)~drug, data = melanom) #how can i do the bootstra #Cox Calibration regression test #and the calibration plot paaveen _ [[alternative HTML version deleted]] __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
[R] regression tree for censored data
Dear r-users, i am developing regression tree for censored data, I have difficulty purning the tree, I choose the smallest of the cp , minimizing the predictive error (xerror) but this is not enough, i still have big tree. if anybody know about he pruning Technique, could you please sent the r syntex aswell Many thanks cheers, paaveenthan _ [[alternative HTML version deleted]] __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
