[R] connecting R eclipse problem

2012-11-07 Thread sagarnikam123
i am connecting R 2.15 with Eclipse IDE 3.7,using [StatET] -:
http://www.walware.de/
i have installed rjava,rj-1.1,rj.gd-1.1,installed new software StatET
3.0-3.1 in eclipse ,etc as prerequisite,
i done all procedure as per eclipse says(Configure  Launch R console
panel),but at end,when configuring with R,gives error in Eclipse console

* using log directory ‘/home/trendwise/lib.Rcheck’
* using R version 2.15.1 (2012-06-22)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* checking for file ‘lib/DESCRIPTION’ ... NO

i have installed R in /usr/lib/R (R_HOME),why R checking for DESCRIPTION
file ?



-
Sagar Nikam 
B.Pharm, M.Sc(Bioinformatics)
Software Engineer (Data Research Analyst )
Trendwise Analytics,Bangalore 
India
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Re: [R] Any good R server-with connection examples

2012-11-02 Thread sagarnikam123
Sir,i installed opencpu on Ubuntu12.04, but they don't have step-by-step
tutorials,instead they have direct written pages to try by people (in which
situatuion u can use opencpu)
can u tell me logic from where should i start,i want  to load R package
(RHive),which is installed in my regular R
and do some queries n statistical calculations.

i don't know json also
how to write any html/php query to connect to R directly  retrieve results
?
do u have any script written by u,from which i can decode to get how to
proceed ?



-
Sagar Nikam 
B.Pharm, M.Sc(Bioinformatics)
Software Engineer (Data Research Analyst )
Trendwise Analytics,Bangalore 
India
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[R] Rserve-PHP client warning

2012-10-23 Thread sagarnikam123
i connected Rserver successfully. can do some functions like
rnorm(),print(),etc...
i am connecting R with Hive-hadoop
i have installed library RHive which will take care of connection
but when i am connecting it throws warning..like

Warning: type 7 is currently not implemented in the PHP client.

code:--
===
//connecting to Rserve
$socket=Rserve_connect();
print Socket:-.$x_socket;
echo br;

//setting path variables
Rserve_eval($socket,Sys.setenv(HADOOP_HOME='/home/trendwise/Hadoop/hadoop-0.20.2'));
Rserve_eval($socket,Sys.setenv(HIVE_HOME='/home/trendwise/Hadoop/hive-0.7.1'));

//loading RHive library
$library=Rserve_eval($socket,library(RHive));
echo Loaded library:-  ;
foreach($library as $value){echo $value. ;}

echo br.initializingbr;
//initializaing RHive library
$kum_faya=Rserve_eval($socket,rhive.init());

echo br.connectingbr;
//connecting R-Hive
$kesar=Rserve_eval($socket,rhive.connect());
foreach($kesar as $value){
print $value.br;
}
===
output:-
Loaded library:- RHive Rserve rJava stats graphics grDevices utils datasets
methods base 
initializing...

connecting...
Warning: type 7 is currently not implemented in the PHP client.Warning: type
7 is currently not implemented in the PHP client.Warning: type 7 is
currently not implemented in the PHP client.Warning: type 7 is currently not
implemented in the PHP client.Warning: type 7 is currently not implemented
in the PHP client.

Array
localhost
Array
hdfs://localhost:54310





-
Sagar Nikam 
B.Pharm, M.Sc(Bioinformatics)
Software Engineer (Data Research Analyst )
Trendwise Analytics,Bangalore 
India
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[R] Any good R server-with connection examples

2012-10-22 Thread sagarnikam123
I want to connect R with HTML/PHP pages to take input from user,do  some
statistical processing on it   show results to HTML page again.
I search on net,i got Rserve package,but examples  are mainly for java
langaure  not for PHP
i am wondering how to connect it to PHP-Apache-MySQL
Is there any good tutorial/video which will tell me how to do that ?
At least tell me logical way how to use it ?



-
Sagar Nikam 
B.Pharm, M.Sc(Bioinformatics)
Software Engineer (Data Research Analyst )
Trendwise Analytics,Bangalore 
India
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[R] problem in installing RMySQL

2012-10-15 Thread sagarnikam123
i m installing pkg but get error like this


 install.packages(RMySQL)
Installing package(s) into
‘/home/trendwise/R/x86_64-pc-linux-gnu-library/2.13’
(as ‘lib’ is unspecified)
trying URL 'http://ftp.iitm.ac.in/cran/src/contrib/RMySQL_0.9-3.tar.gz'
Content type 'application/x-gzip' length 165363 bytes (161 Kb)
opened URL
==
downloaded 161 Kb

* installing *source* package ‘RMySQL’ ...
checking for gcc... gcc
checking for C compiler default output file name... a.out
checking whether the C compiler works... yes
checking whether we are cross compiling... no
checking for suffix of executables... 
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ANSI C... none needed
checking how to run the C preprocessor... gcc -E
checking for compress in -lz... yes
checking for getopt_long in -lc... yes
checking for mysql_init in -lmysqlclient... no
checking for egrep... grep -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking mysql.h usability... no
checking mysql.h presence... no
checking for mysql.h... no
checking for mysql_init in -lmysqlclient... no
checking for mysql_init in -lmysqlclient... no
checking for mysql_init in -lmysqlclient... no
checking for mysql_init in -lmysqlclient... no
checking for mysql_init in -lmysqlclient... no
checking for mysql_init in -lmysqlclient... no
checking for mysql_init in -lmysqlclient... no
checking /usr/local/include/mysql/mysql.h usability... no
checking /usr/local/include/mysql/mysql.h presence... no
checking for /usr/local/include/mysql/mysql.h... no
checking /usr/include/mysql/mysql.h usability... no
checking /usr/include/mysql/mysql.h presence... no
checking for /usr/include/mysql/mysql.h... no
checking /usr/local/mysql/include/mysql/mysql.h usability... no
checking /usr/local/mysql/include/mysql/mysql.h presence... no
checking for /usr/local/mysql/include/mysql/mysql.h... no
checking /opt/include/mysql/mysql.h usability... no
checking /opt/include/mysql/mysql.h presence... no
checking for /opt/include/mysql/mysql.h... no
checking /include/mysql/mysql.h usability... no
checking /include/mysql/mysql.h presence... no
checking for /include/mysql/mysql.h... no

Configuration error:
  could not find the MySQL installation include and/or library
  directories.  Manually specify the location of the MySQL
  libraries and the header files and re-run R CMD INSTALL.

INSTRUCTIONS:

1. Define and export the 2 shell variables PKG_CPPFLAGS and
   PKG_LIBS to include the directory for header files (*.h)
   and libraries, for example (using Bourne shell syntax):

  export PKG_CPPFLAGS=-IMySQL-include-dir
  export PKG_LIBS=-LMySQL-lib-dir -lmysqlclient

   Re-run the R INSTALL command:

  R CMD INSTALL RMySQL_version.tar.gz

2. Alternatively, you may pass the configure arguments
  --with-mysql-dir=base-dir (distribution directory)
   or
  --with-mysql-inc=base-inc (where MySQL header files reside)
  --with-mysql-lib=base-lib (where MySQL libraries reside)
   in the call to R INSTALL --configure-args='...' 

   R CMD INSTALL --configure-args='--with-mysql-dir=DIR'
RMySQL_version.tar.gz

ERROR: configuration failed for package ‘RMySQL’
* removing ‘/home/trendwise/R/x86_64-pc-linux-gnu-library/2.13/RMySQL’

The downloaded packages are in
‘/tmp/Rtmp97FOng/downloaded_packages’
Warning message:
In install.packages(RMySQL) :
  installation of package 'RMySQL' had non-zero exit status
==

i download  extract   mysql-connector-c-6.0.2-linux-glibc2.3-x86-64bit
export two variables as
PKG_CPPFLAGS=/var/lib/mysql/mysql-connector-c-6.0.2-linux-glibc2.3-x86-64bit/include
export $PKG_CPPFLAGS
PKG_LIBS=/var/lib/mysql/mysql-connector-c-6.0.2-linux-glibc2.3-x86-64bit/lib
export $PKG_LIBS

where did i was wrong ?






-
Sagar Nikam 
B.Pharm, M.Sc(Bioinformatics)
Software Engineer (Data Research Analyst )
Trendwise Analytics,Bangalore 
India
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[R] how to include --configure-args= in R CMD INSTALL

2012-10-15 Thread sagarnikam123
I am installing RMySQL_0.9-3.tar.gz pkg on windows-7 64 bit machine as:---

C:\Users\trendwise  R CMD INSTALL
--configure-args='--with-mysql-inc=C:\\Program Files\\MySQL\\MySQL Server
5.5\\include' C:\\Users\\trendwise\\Downloads\\RMySQL_0.9-3.tar.gz

* installing to library 'C:/Users/trendwise/Documents/R/win-library/2.14'
* installing *source* package 'RMySQL' ...
** package 'RMySQL' successfully unpacked and MD5 sums checked
checking for $MYSQL_HOME... C:\Program Files\MySQL\MySQL Server 5.5\.;
cygwin warning:
  MS-DOS style path detected: C:\Program
  Preferred POSIX equivalent is: /cygdrive/c/Program
  CYGWIN environment variable option nodosfilewarning turns off this
warning.
  Consult the user's guide for more details about POSIX paths:
http://cygwin.com/cygwin-ug-net/using.html#using-pathnames
test: Files\MySQL\MySQL: unknown operand
** libs
Warning: this package has a non-empty 'configure.win' file,
so building only the main architecture

cygwin warning:
  MS-DOS style path detected: C:/PROGRA~1/R/R-214~1.2/etc/x64/Makeconf
  Preferred POSIX equivalent is:
/cygdrive/c/PROGRA~1/R/R-214~1.2/etc/x64/Makeconf
  CYGWIN environment variable option nodosfilewarning turns off this
warning.
  Consult the user's guide for more details about POSIX paths:
http://cygwin.com/cygwin-ug-net/using.html#using-pathnames
gcc -m64 -IC:/PROGRA~1/R/R-214~1.2/include -IC:\Program Files\MySQL\MySQL
Server 5.5\.;/include-Id:/RCompile/CRANpkg/extralibs64/local/include
-O2 -Wall  -std=gnu99 -mtune=core2 -c RS-DBI.c -o RS-DBI.o
RS-DBI.c: In function 'RS_na_set':
RS-DBI.c:1219:11: warning: variable 'c' set but not used
[-Wunused-but-set-variable]
gcc -m64 -IC:/PROGRA~1/R/R-214~1.2/include -IC:\Program Files\MySQL\MySQL
Server 5.5\.;/include-Id:/RCompile/CRANpkg/extr
alibs64/local/include -O2 -Wall  -std=gnu99 -mtune=core2 -c RS-MySQL.c
-o RS-MySQL.o
In file included from RS-MySQL.c:22:0:
RS-MySQL.h:32:19: fatal error: mysql.h: No such file or directory
compilation terminated.
make: *** [RS-MySQL.o] Error 1
ERROR: compilation failed for package 'RMySQL'
* removing 'C:/Users/trendwise/Documents/R/win-library/2.14/RMySQL'
===
its giving this error,
RS-MySQL.h:32:19: fatal error: mysql.h: No such file or directory
i want to include mysql.h path in either RCMD INSTALL  or  
install.packages() command







-
Sagar Nikam 
B.Pharm, M.Sc(Bioinformatics)
Software Engineer (Data Research Analyst )
Trendwise Analytics,Bangalore 
India
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[R] problem in downloading RMySQL pkg

2012-10-12 Thread sagarnikam123
when i am installing  Rmysql  packages i get error like

Warning in install.packages :
  package ‘RMySQL’ is not available (for R version 2.15.0)


which is earliest version should i used ?how should i know the specific
version



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[R] installing RMySQL error due to cygwin

2012-10-12 Thread sagarnikam123
when i am installing package manually (using below command) i get error about
cygwin as,

 install.packages(C:\\Users\\trendwise\\Downloads\\RMySQL_0.9-3.tar.gz,lib=getOption(lib),
 repos = NULL, type=source)

error:--

Installing package(s) into ‘C:/Users/trendwise/Documents/R/win-library/2.15’
(as ‘lib’ is unspecified)
* installing *source* package 'RMySQL' ...
** package 'RMySQL' successfully unpacked and MD5 sums checked
tty option detected in CYGWIN environment variable.
CYGWIN=tty is no longer supported.  Please remove it from your
CYGWIN environment variable and use a terminal emulator like mintty,
xterm, or rxvt.
checking for $MYSQL_HOME... not found... searching registry...

Error in readRegistry(SOFTWARE\\MySQL AB, hive = HLM, maxdepth = 2) : 
  Registry key 'SOFTWARE\MySQL AB' not found
Execution halted

ERROR: configuration failed for package 'RMySQL'
* removing 'C:/Users/trendwise/Documents/R/win-library/2.15/RMySQL'
Warning in install.packages :
  running command 'C:/PROGRA~1/R/R-215~1.0/bin/x64/R CMD INSTALL -l
C:/Users/trendwise/Documents/R/win-library/2.15  
C:/Users/trendwise/Downloads/RMySQL_0.9-3.tar.gz' had status 1
Warning in install.packages :
  installation of package ‘C:/Users/trendwise/Downloads/RMySQL_0.9-3.tar.gz’
had non-zero exit status




i dont want to uninstall cygwin




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[R] RS-MySQL.h:32:19: fatal error: mysql.h: No such file or directory

2012-10-12 Thread sagarnikam123
i m installing RMySQL under windows -7 64bit,
i have wamp server(which has  mysql5.5.16)
i have given MYSQL_HOME path in environment variable as
MYSQL_HOME=C:\wamp\bin\mysql\mysql5.5.16\bin  ,
 also create Renviron.site file in   C:\Program Files\R\R-2.15.0\etc  
giving MYSQL_HOME=C:/wamp/bin/mysql/mysql5.5.16/bin as path
i install c connector MySQL Connector C 6.0.2 version  also,  which has
mysql.h file


Question:-
In which folder should I include mysql.h file ?
i dont know how to put mysql.h  in RMySQL_0.9-3.tar.gz f, if yes how can i
do it ?


 install.packages(RMySQL,type=source)
Installing package(s) into ‘C:/Users/trendwise/Documents/R/win-library/2.15’
(as ‘lib’ is unspecified)
trying URL 'http://ftp.iitm.ac.in/cran/src/contrib/RMySQL_0.9-3.tar.gz'
Content type 'application/x-gzip' length 165363 bytes (161 Kb)
opened URL
downloaded 161 Kb

* installing *source* package 'RMySQL' ...
** package 'RMySQL' successfully unpacked and MD5 sums checked
checking for $MYSQL_HOME... C:\wamp\bin\mysql\mysql5.5.16\bin
cygwin warning:
  MS-DOS style path detected: C:\wamp\bin\mysql\mysql5.5.16\bin
  Preferred POSIX equivalent is: /cygdrive/c/wamp/bin/mysql/mysql5.5.16/bin
  CYGWIN environment variable option nodosfilewarning turns off this
warning.
  Consult the user's guide for more details about POSIX paths:
http://cygwin.com/cygwin-ug-net/using.html#using-pathnames
** libs
Warning: this package has a non-empty 'configure.win' file,
so building only the main architecture

cygwin warning:
  MS-DOS style path detected: C:/PROGRA~1/R/R-215~1.0/etc/x64/Makeconf
  Preferred POSIX equivalent is:
/cygdrive/c/PROGRA~1/R/R-215~1.0/etc/x64/Makeconf
  CYGWIN environment variable option nodosfilewarning turns off this
warning.
  Consult the user's guide for more details about POSIX paths:
http://cygwin.com/cygwin-ug-net/using.html#using-pathnames
gcc -m64 -IC:/PROGRA~1/R/R-215~1.0/include -DNDEBUG
-IC:\wamp\bin\mysql\mysql5.5.16\bin/include   
-Id:/RCompile/CRANpkg/extralibs64/local/include -O2 -Wall  -std=gnu99
-mtune=core2 -c RS-DBI.c -o RS-DBI.o
RS-DBI.c: In function 'RS_na_set':
RS-DBI.c:1219:11: warning: variable 'c' set but not used
[-Wunused-but-set-variable]
gcc -m64 -IC:/PROGRA~1/R/R-215~1.0/include -DNDEBUG
-IC:\wamp\bin\mysql\mysql5.5.16\bin/include   
-Id:/RCompile/CRANpkg/extralibs64/local/include -O2 -Wall  -std=gnu99
-mtune=core2 -c RS-MySQL.c -o RS-MySQL.o
In file included from RS-MySQL.c:22:0:
RS-MySQL.h:32:19: fatal error: mysql.h: No such file or directory
compilation terminated.
make: *** [RS-MySQL.o] Error 1
ERROR: compilation failed for package 'RMySQL'
* removing 'C:/Users/trendwise/Documents/R/win-library/2.15/RMySQL'
* restoring previous
'C:/Users/trendwise/Documents/R/win-library/2.15/RMySQL'
Warning in install.packages :
  running command 'C:/PROGRA~1/R/R-215~1.0/bin/x64/R CMD INSTALL -l
C:/Users/trendwise/Documents/R/win-library/2.15  
C:\Users\TRENDW~1\AppData\Local\Temp\RtmpshWgve/downloaded_packages/RMySQL_0.9-3.tar.gz'
had status 1
Warning in install.packages :
 installation of package ‘RMySQL’ had non-zero exit status






-
Sagar Nikam 
B.Pharm, M.Sc(Bioinformatics)
Software Engineer (Data Research Analyst )
Trendwise Analytics,Bangalore 
India
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[R] package request

2012-10-10 Thread sagarnikam123
which package from CRAN used for Big-Data analysis ?
is there any separate package for Big-Data analysis?
or for making reports  Business intelligence 



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[R] histogram corelation plots

2012-10-10 Thread sagarnikam123
i want to show histogram in innovative way (good if interactive) in html
report..is threre any tutorials/hint
also there is any package to show correalation plot



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[R] any certification for R language

2012-06-08 Thread sagarnikam123
oracle has their SCJP certification  for  java language
like that i want R certification  for my job interview


Also
1) i want interview questions on R(any website/pdb/any source)
2)any video about R learning(tutorials),   any CD/DVD learning software

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[R] how to check given number seq. is time series or not?

2012-05-26 Thread sagarnikam123
i have following numbers 

 0.889046409368551 
 1.22726162946495 
 1.22726162946495 
 1.35785109728356 
 1.35785109728356 
 1.10704609982913 
 1.4424189950435 
 1.2277843378837 
 1.35785109728356 
 0.970883941918588 
 0.822170913920467 
 1.35785109728356 
 0.358815782262543 
 0.774234247460432 
 0.822170913920467 
 0.822170913920467 
 0.72599976881814 
 0.671583894425946 
 0.813223271443211 
 0.774234247460432 
 1.00184802593319 
 1.4424189950435 
 1.22726162946495 
 0.970883941918588 
 0.358815782262543 
 1.31016840948316 
 0.970883941918588 
 1.4424189950435 
 0.889046409368551 
 4.91679981837699 
 1.2277843378837 
 1.21605333196293 
 0.369861996166875 
 0.774748148811057 
 0.369861996166875 
 1.4424189950435 
 1.22726162946495 
 1.4424189950435 
 1.22726162946495 
 1.16291100715022 
 2.33863311242767 
 0.774234247460432 
 4.91679981837699 
 0.9670580678417 
 0.970883941918588 
 0.9670580678417 
 1.10704609982913 
 4.91679981837699 
 1.4424189950435 
 1.05410985855726 
 1.22726162946495 
 1.21605333196293 
 1.35785109728356 
 0.822170913920467 
 1.4424189950435 
 0.970883941918588 
 0.835429195630044 
 0.774234247460432 
 1.61328986496929 
 0.970883941918588 
 1.2277843378837 
 1.22726162946495 
 0.970883941918588 
 1.10704609982913 
 1.10704609982913 
 1.10704609982913 
 1.4424189950435 
 1.22726162946495 
 1.4424189950435 
 1.35785109728356 
 0.9670580678417 
 0.9670580678417 
 0.885419165744907 
 1.16291100715022 
 0.369861996166875 
 0.9670580678417 
 0.774748148811057 
 1.22726162946495 
 1.4424189950435 
 1.22726162946495 
 1.31016840948316 
 0.813223271443211 
 1.4424189950435 
 0.822170913920467 
 1.05410985855726 
 0.853014111520372 
 1.3245534157835 
 0.774234247460432 
 0.774234247460432 
 1.22726162946495 
 0.889046409368551 
 1.4424189950435 
 0.842622628771215 
 0.889046409368551 
 0.889046409368551 
 1.31898472833595 
 1.4424189950435 
 1.35785109728356 
 0.682617341489085 
 0.965180291004232 

i don't want to check by plotting graph of above data(because i have
thousands of such data structures)
is there any function in R to check it ?
how can i check validity by programming?



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Re: [R] how to check given number seq. is time series or not?

2012-05-26 Thread sagarnikam123
Yes,sir index of above/below numbers is time (both dataset are same)

x
1   0.8890464
2   1.2272616
3   1.2272616
4   1.3578511
5   1.3578511
6   1.1070461
7   1.4424190
8   1.2277843
9   1.3578511
10  0.9708839
11  0.8221709
12  1.3578511
13  0.3588158
14  0.7742342
15  0.8221709
16  0.8221709
17  0.7259998
18  0.6715839
19  0.8132233
20  0.7742342
21  1.0018480
22  1.4424190
23  1.2272616
24  0.9708839
25  0.3588158
26  1.3101684
27  0.9708839
28  1.4424190
29  0.8890464
30  4.9167998
31  1.2277843
32  1.2160533
33  0.3698620
34  0.7747481
35  0.3698620
36  1.4424190
37  1.2272616
38  1.4424190
39  1.2272616
40  1.1629110
41  2.3386331
42  0.7742342
43  4.9167998
44  0.9670581
45  0.9708839
46  0.9670581
47  1.1070461
48  4.9167998
49  1.4424190
50  1.0541099
51  1.2272616
52  1.2160533
53  1.3578511
54  0.8221709
55  1.4424190
56  0.9708839
57  0.8354292
58  0.7742342
59  1.6132899
60  0.9708839
61  1.2277843
62  1.2272616
63  0.9708839
64  1.1070461
65  1.1070461
66  1.1070461
67  1.4424190
68  1.2272616
69  1.4424190
70  1.3578511
71  0.9670581
72  0.9670581
73  0.8854192
74  1.1629110
75  0.3698620
76  0.9670581
77  0.7747481
78  1.2272616
79  1.4424190
80  1.2272616
81  1.3101684
82  0.8132233
83  1.4424190
84  0.8221709
85  1.0541099
86  0.8530141
87  1.3245534
88  0.7742342
89  0.7742342
90  1.2272616
91  0.8890464
92  1.4424190
93  0.8426226
94  0.8890464
95  0.8890464
96  1.3189847
97  1.4424190
98  1.3578511
99  0.6826173
100 0.9651803

kindly tell me is this is time series or not ?
if yes,how can i find by coding/programming?


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Re: [R] how to check given number seq. is time series or not?

2012-05-26 Thread sagarnikam123
is this is time series ?


   x
1  2
2  2
3  2
4  2
5  2
6  2
7  2
8  2
9  2
10 2
11 2
12 2


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[R] how to predict/forecast missing values in time series ?

2012-05-19 Thread sagarnikam123
i have time series as
1.3578511
0.5119648
1.3189847
0.9214787
1.2272616
4.9167998
1.2272616
1.2272616
0.8854192
2.3386331
1.6132899
0.2030302
0.8426226
1.2277843
NA
1.3189847
1.3578511
0.8530141
2.3386331
1.0541099
0.7747481
0.5764672
1.3189847
1.2160533
1.2272616
0.6715839
0.9651803
1.6132899
1.2006974
0.6875047
1.3245534
1.2006974
0.8221709
1.3101684
1.6132899
1.6132899
1.2006974
1.3189847
1.0018480
1.2277843
1.4424190
1.6132899
1.2277843
1.2006974
0.7779642
0.9381081
0.8854192
NA
NA
1.3189847
1.1070461
0.8221709
4.9167998
0.9214787
1.3189847
1.3189847
1.2277843
1.4424190
1.6132899
1.6132899
4.9167998
0.8235792
0.9708839
1.1070461
1.2160533
0.8354292
1.4424190
1.1958634
0.5119648
1.4424190
1.4424190
1.6132899
1.6132899
0.6710844
1.2272616
0.9708839
0.8890464
1.4424190
0.8890464
0.8221709
1.1958634
0.8132233
0.4630722
4.9167998
0.8890464
1.3189847
0.7373181
1.1070461
1.2279813
0.8890464
0.3588158
1.4424190
0.8132233
0.4297043
1.3578511
4.9167998
1.2272616
0.8426226
1.4424190
1.6132899
NA
 

in which NA are missing values,i want to predict/forecast it,i search on
internet,i found that Amelia packages can impute missing values;
i used but it giving error,how can i resolve it

library(Amelia)
t-read.table(C:\\Users\\exam\\Desktop\\missing_ts.txt)

 a.out - amelia(t)
Amelia Error Code:  42 
There is only 1 column of data. Cannot impute
 
 amelia(x=as.matrix(1:101,t$V1))
Amelia Error Code:  39 
Your data has no missing values.  Make sure the code for 
missing data is set to the code for R, which is NA

 amelia(t$V1)
Error in colSums(!is.na(x)) : 
  'x' must be an array of at least two dimensions

is my way of predicting wrong?,if yes,then which method should i follow?
 




















































































































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Re: [R] how to download source code, pdf manual for any package from internet?

2012-05-19 Thread sagarnikam123
i use download.file() ,it works good for package source code

t-available.packages(type=source)  #all packages(list) from repository in
source code .tar.gz format
length(t[,2])  #total packages-- 3796

#package source file download
for( i in seq_along(t[,1]) ) {
download.file(
paste(t[i,Repository],/,t[i,Package],_,t[i,Version],.tar.gz,sep=),destfile=paste(C:/Users/exam.2-235/Documents/R_laveria/,t[i,Package],_,t[i,Version],.tar.gz,sep=)
)
}

#package pdf downloading
for(j in seq_along(t[,1]) ){
download.file(
paste(http://cran.r-project.org/web/packages/,t[j,Package],/,t[j,Package],.pdf,sep=;),destfile=paste(C:/Users/exam.2-235/Documents/R_rab/,t[j,Package],.pdf,sep=)
)
}

when i am trying for pdf ,it downloads completely, but when open in pdf
reader,it tell that pdf cannot be open because it's damaged  cannot be
repaired
what will be problem ? i am working on windows-vista


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[R] how to download source code, pdf manual for any package from internet?

2012-05-17 Thread sagarnikam123
i can get list of available packages by
 r-available.packages()

No of available packages
 length(r[,1])
[1] 3739

single package name
 r[1,1]
[1] ACCLMA

i want download all packages  starting with A / a alphabets,
with their source code, pdf manual/vignettes from internet


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[R] how to make http proxy setting as automatically detect?

2012-05-11 Thread sagarnikam123
i am connecting through my mobile connection,which don't have proxy setting
i can access internet in browser using  automatically detect setting,i get
error when trying below

 source(http://bioconductor.org/biocLite.R;)
Error in file(file, r, encoding = encoding) : 
  cannot open the connection
In addition: Warning message:
In file(file, r, encoding = encoding) :
  InternetOpenUrl failed: 'ÿÄÿLM×Ëw€%'

i set proxy as none by
 Sys.setenv(no_proxy=) 
 Sys.getenv(http_proxy)
[1] 

is there any way to tell R about auto detect setting for mobile 
connections

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[R] how to download data from soap server using R

2012-05-06 Thread sagarnikam123
i don't know perl,but on server site,they give soap:lite using perl ,
go to---http://www.kegg.jp/kegg/soap/doc/keggapi_manual.html
i want to download data from kegg server ,using R only, 
how to proceed?
 what is mean by SOAP client driver ?
also go to http://soap.genome.jp/KEGG.wsdl

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Re: [R] problem in matching numbers in two variables

2012-04-29 Thread sagarnikam123
No its not perfectly working see below

 j-c(1,1,2,2,3)
 k-c(2,1,1,1,1)
 j%%k
[1] 1 0 0 0 0

problem comes when one of my sequence have 1

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[R] problem in matching numbers in two variables

2012-04-28 Thread sagarnikam123
i want to compare two variables (having numbers) serially for
matching/dismatching
both having equal length

 x
  [1] 2 2 1 2 3 2 2 2 2 3 3 2 2 2 2 2 2 3 2 2 2 2 2 2 2 2 2 2 3 2 3 2 2 2 1
2 2
 [38] 2 2 2 3 2 3 2 2 1 2 2 2 2 1 1 1 3 2 2 2 2 1 1 3 1 1 1 2 2 2 3 2 3 3 3
2 2
 [75] 2 2 3 2 2 1 1 1 2 3 2 2 2 2 2 2 2 2 2 1 1 3 2 2 2 2 2 2 2 2 2 2 2 1 3
 y
  [1] 2 2 2 1 3 1 3 2 1 3 3 3 3 2 2 1 2 3 3 3 1 1 2 2 2 2 2 2 1 2 3 1 2 2 1
1 2
 [38] 1 2 3 2 1 3 1 1 2 2 2 2 1 2 1 2 3 2 3 2 1 2 2 3 1 1 1 2 2 2 3 2 3 3 3
3 3
 [75] 2 2 1 2 1 2 1 2 1 3 3 3 1 2 2 2 1 2 1 2 2 3 2 3 2 3 2 2 2 2 1 2 2 2 3
 length(x)
[1] 109
 length(y)
[1] 109
 #both having equal length
 which(x%in%y)  #gives no of matches positions
  [1]   1   2   3   4   5   6   7   8   9  10  11  12  13  14  15  16  17 
18
 [19]  19  20  21  22  23  24  25  26  27  28  29  30  31  32  33  34  35 
36
 [37]  37  38  39  40  41  42  43  44  45  46  47  48  49  50  51  52  53 
54
 [55]  55  56  57  58  59  60  61  62  63  64  65  66  67  68  69  70  71 
72
 [73]  73  74  75  76  77  78  79  80  81  82  83  84  85  86  87  88  89 
90
 [91]  91  92  93  94  95  96  97  98  99 100 101 102 103 104 105 106 107
108
[109] 109
 length(which(x%in%y))
[1] 109

it show that all numbers are matched ,but in real this is not true
so,how to find matched numbers from two variables(numeric) like this?

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[R] How to find 5 closest number from matrix having attributes?

2012-04-26 Thread sagarnikam123
i found one clue in our forum, but it can give position for whole matrix,

n-read.table(file.choose(),header=T)
y-n[,c(1,2,3)]
 my.number=1.12270420185886
 z-abs(y-my.number)==min(abs(y-my.number))
 which(z)
[1] 19

i have uploaded file,which have matrix[21,3] dimension

i want to find at least 5 closest value with letter  also column no
in another way,i want 5 closest single value from matrix with position

uploaded file:- 
http://r.789695.n4.nabble.com/file/n4589728/chocolate_potential_x.txt
chocolate_potential_x.txt 

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[R] how to avoid newlines tabs in file opening?

2012-04-22 Thread sagarnikam123
i have uploaded file,but when i am opening it in R,using

 u-file(file.choose(),r)
k-readLines(u)
k
 k[1:120]

is has all /t (tabs) newlines, how to avoid it,
can i take first 3 columns only in table form (lines starts with # not
important for me)

uploaded file:-
http://r.789695.n4.nabble.com/file/n4577757/rabata.txt rabata.txt 

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[R] how to cut files from any folder to another folder?

2012-04-22 Thread sagarnikam123
i want to cut file from e.g. abc  folder  put it into another location
with folder name e.g. xyz
how should i proceed?

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[R] how to write html output (webscraped using RCurl package) into file?

2012-04-21 Thread sagarnikam123
i want
http://scop.berkeley.edu/astral/pdbstyle/?id=d1fjgc2output=html,showing
information in webpage to be written in .txt file as it is(i don't want any
html tag)
i am using RCurl package

marathi-htmlTreeParse(http://scop.berkeley.edu/astral/pdbstyle/?id=d1fjgc2output=html;)
marathi
kasam-marathi$children$html[[body]][[pre]][[text]]
kasam
 write(kasam,papita.txt)
Error in cat(list(...), file, sep, fill, labels, append) : 
  argument 1 (type 'list') cannot be handled by 'cat

i want to write kasam, as shown on console into  .txt file


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[R] want to forecast AR model calculate R square (but which method is good)

2012-04-19 Thread sagarnikam123
i used itsmr package ,
want to forecast AR model  calculate R square to judge my
forecasting/prediction ,that is it good or not ?
i take original model(i)make example/demo model(j) ( 20 numbers less
from original model)

#AR model  forecasting
i-read.table(file.choose(),skip=1)   #taking times series data

used file:---   http://r.789695.n4.nabble.com/file/n4572840/1AIS_B.txt
1AIS_B.txt 

i-i$V1   #original data
 j-i[1:(length(i)-20)]#withdrawing last 20 numbers
 
 dynamite_ori_20-i[(length(i)-19):length(i)]  #original numbers(last 20)
 arar_j-arar(y=j,h=20)#AR forecasting

 #plotting to visualize
 k-append(j,arar_j$pred)
 plotc(i,k)
 
 
 #calculates R squred for AR forcasted 
 #1st method
 x-dynamite_ori_20#original value
 y-arar_j$pred#predicted value
 f-lm(y~x)
 
 beta=f$coeff[x]*(sd(x)/sd(y))
 r_square-beta*cov(x,y)
 r_square
   x 
0.0008692213
__
#2) method 
 summary(f)[c(r.squared, adj.r.squared)]
$r.squared
[1] 0.0173342

$adj.r.squared
[1] -0.03725834
__

which r_square i used to check my forecasting is good or bad?
is there any other method to check forecasting quality ?


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[R] what is this warnings ?

2012-04-14 Thread sagarnikam123
i am running one script for many files,
Script file atttached:-
http://r.789695.n4.nabble.com/file/n4556770/AR_anarkali_aic.r
AR_anarkali_aic.r 
 warnings are given as below
what is meaning of these warnings?

Warning messages:
1: In optim(coef, err, gr = NULL, hessian = TRUE, ...) :
  one-diml optimization by Nelder-Mead is unreliable:
use Brent or optimize() directly

is there anything wrong with my code or my approach to calculate AIC values
?
how i know due to which function warnings is generated?
if i want to print warnings with file name then ...?

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[R] i am not getting time series prediction results?

2012-04-09 Thread sagarnikam123
i have attached file,
http://r.789695.n4.nabble.com/file/n4542543/1BHP_A.txt 1BHP_A.txt 
i just want to validate predicting results, i give less 10 digits for
prediction  compare results it with previous input data(input file)

 i-read.table(file.choose())  #attached file taking
 i-i$V1
 length(i)
[1] 44
 j-i[1:34]
 pre-predict(ar(i),n.ahead=10)
 ts.plot(ts(j),pre$pred,col=c(1,5))
 pre$pred
Time Series:
Start = 45 
End = 54 
Frequency = 1 
 [1] -0.01136364 -0.01136364 -0.01136364 -0.01136364 -0.01136364
 [6] -0.01136364 -0.01136364 -0.01136364 -0.01136364 -0.01136364

prediction gives similar values,i.e. straight line.
why this so?

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[R] how can i get AIC value for AR model

2012-04-02 Thread sagarnikam123
attached file:-   http://r.789695.n4.nabble.com/file/n4525253/1A1I_A.txt
1A1I_A.txt 

arr-ar(t$V1) 
 str(arr) 
 arr$aic 
0 1 2 3 4 5 6 
 4.273791  4.397484  2.258405  3.008703  1.884487  0.00  1.476055 
7 8 910111213 
 3.204865  3.544783  5.474194  3.787079  3.873081  5.872812  7.085577 
   141516171819 
 8.762945 10.758352 11.484045 12.837440  7.465485  8.729661 

but which is perfect aic value to take  ? ? ? ? ? 

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[R] Is it there any std pattern in R which show same representation style of ppt found on net

2012-03-31 Thread sagarnikam123
i m searching on net,material related to R,
whenever i get ppt presentation of some topic ,i found it in speical format
white backgroud  blue bars,having links for further topics
see link

1) https://www.rmetrics.org/files/Meielisalp2007/Presentations/Pfaff.pdf
2)http://grapevine.com.au/~yanchang/docs/Time-Series-Mining-slides.pdf

If this is format,how can i made it,if i want to give my R codes
presentation with your std style
is there any software to make it

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Re: [R] Is this is correct way to calculate AIC value for time series ?

2012-03-31 Thread sagarnikam123
i want aic value to find best model from AR  ARMA model

i calculate ARMA model via autofit() function from itsmr package

when i get aic of AR model,then i will compare with ARMA's  aicc value

is my way logically correct?

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[R] Is this is correct way to calculate AIC value for time series ?

2012-03-31 Thread sagarnikam123
i have attached time series file
http://r.789695.n4.nabble.com/file/n4521545/1A1I_A_phi_psi_pot_r_k.txt
1A1I_A_phi_psi_pot_r_k.txt 
i am not understanding formula() function,but what i read,from that

1 st method:-

 t-read.table(file.choose())   #choosing attached file
 lm-lm(t$V1~ 1) # i used Tilde sign
 loglik-logLik(lm)
 AIC(loglik)
---

2 nd method:-

arr-ar(t$V1)
 str(arr)
 arr$aic
0 1 2 3 4 5 6 
 4.273791  4.397484  2.258405  3.008703  1.884487  0.00  1.476055 
7 8 910111213 
 3.204865  3.544783  5.474194  3.787079  3.873081  5.872812  7.085577 
   141516171819 
 8.762945 10.758352 11.484045 12.837440  7.465485  8.729661 

but which is perfect aic value to take ? ? ? ? ? 
--
which method correct to calculate classical/general AIC value
or my both method are wrong,if yes,then how should i proceed?

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Re: [R] how to increase speed for function?/time efficiency of below function

2012-03-30 Thread sagarnikam123
Yes sir,i m using another's code,i will acknowledge them in my paper
publication when my project completes.
but can u tell me, how to decide P,D  Q values in sarima() function  using
code
its difficult to decide by visually,i have 4500 such time series


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Re: [R] SARIMA MODEL QUESTION

2012-03-30 Thread sagarnikam123
how will you decide P,D  Q in sarima() function using code,can u give me
code

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[R] how to increase speed for function?/time efficiency of below function

2012-03-29 Thread sagarnikam123
i am using sarima() function as below
___
sarima=function(data,p,d,q,P=0,D=0,Q=0,S=-1,tol=.001){ 
  n=length(data)
  constant=1:n   
  xmean=matrix(1,n,1) 
  if (d0  D0) 
fitit=arima(data, order=c(p,d,q), seasonal=list(order=c(P,D,Q),
period=S), 
optim.control=list(trace=1,REPORT=1,reltol=tol))
  if (d0  D==0)  
fitit=arima(data, order=c(p,d,q), seasonal=list(order=c(P,D,Q),
period=S),
xreg=constant,include.mean=F,
optim.control=list(trace=1,REPORT=1,reltol=tol))
  if (d==0  D==0)
fitit=arima(data, order=c(p,d,q), seasonal=list(order=c(P,D,Q),
period=S),
xreg=xmean,include.mean=F,
optim.control=list(trace=1,REPORT=1,reltol=tol))
  if (d==0  D0)  
fitit=arima(data, order=c(p,d,q), seasonal=list(order=c(P,D,Q),
period=S),
xreg=constant,include.mean=F,
optim.control=list(trace=1,REPORT=1,reltol=tol))
  if (S  0) goof=20 else goof=3*S
  tsdiag(fitit,gof.lag=goof)
  k=length(fitit$coef)
  BIC=log(fitit$sigma2)+(k*log(n)/n)
  AICc=log(fitit$sigma2)+((n+k)/(n-k-2))
  AIC=log(fitit$sigma2)+((n+2*k)/n)
  innov-fitit$resid
  list(fit=fitit, AIC=AIC, AICc=AICc, BIC=BIC)
}

it takes 1-2 minutes for one time series,i have 4500 times series data,how
to increase speed/time of execution
is there any concept of threading/parallel computing in R
Please..Please.can u suggest me code for above function,which will be
time efficient,i am frustrated with time consumption  reading material on
parallel computing, but i cant understand it properly



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[R] How to move files from one folder to another

2012-03-28 Thread sagarnikam123
How to move files from one folder to another i.e. cutting/copying from one
location  pasting to another

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Re: [R] how to convert digits to specified decimal vectors

2012-03-24 Thread sagarnikam123
yes sir i used format() function like

 x-c(3,5,6)
y-format(x,nsmall=6)
y
[1] 3.00 5.00 6.00

but it again gives me same output
 as.double(y[1])
[1] 3

i want it in decimal style like 4.000 (i.e. without string format)


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[R] how to know perfect execution of function ? if error occurred in execution, how to report it?

2012-03-23 Thread sagarnikam123
i have one for loop,in which i am dealing with time series  arima function,
while iterating at some stage there is a error, like

Error in arima(x, c(p, 0, q)) : non-stationary AR part from CSS

i want to know at which step this error occurred  print that iterating
number

e.g.
x-c(1:10)
for (i in 1:5 ){
z-arima(x[i])
print(z)
}

if error occurred in arima function at i=3 step, it should report  execute
complete loop until i=5

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[R] how to convert digits to specified decimal vectors

2012-03-23 Thread sagarnikam123
 x
[1] 7 8 9 10 11 12

convert such that

7.
8.
9.
10.000
11.000
12.000

total size of 5 digits for each value


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[R] how to make this time series data stationary ?

2012-03-22 Thread sagarnikam123
i have below file as time series data
http://r.789695.n4.nabble.com/file/n4494907/1A2X_B_phi_psi_pot_r_k.txt
1A2X_B_phi_psi_pot_r_k.txt 
i used autofit function from itsmr package

k-read.table(file.choose())
 ar(k$V1)
Call:
ar(x = k$V1)
Order selected 0  sigma^2 estimated as  0.2499

 autofit(k$V1)
Error in arima(x, c(p, 0, q)) : non-stationary AR part from CSS

what is this CSS ? hot to make it stationary

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[R] how to check stationary/non-stationary time series data?

2012-03-22 Thread sagarnikam123
i have following file
http://r.789695.n4.nabble.com/file/n4495257/1A2X_B_phi_psi_pot_r_k.txt
1A2X_B_phi_psi_pot_r_k.txt 

but i don't know which test used to check non-stationary ness of time
series?

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[R] how calculate seasonal component cyclic component of time series?

2012-03-21 Thread sagarnikam123
i am new to time series,whatever i know up till now,from that
i have uploaded time series file  what to build arma model,but for that i
want p  q values(orders)
tell me how to calculate best p  q values to find best AIC values for model

i am doing but giving error
bhavar-read.table(file.choose())  #taking time series file
 decompose(bhavar$V1)
Error in decompose(bhavar$V1) : time series has no or less than 2 periods

what this error is telling ?

http://r.789695.n4.nabble.com/file/n4491470/tinku.txt tinku.txt 

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Re: [R] No its not working, how to calculate best p order value for arma process

2012-03-21 Thread sagarnikam123
 ts-ts(bhavar$V1)
 decompose(ts)
Error in decompose(ts) : time series has no or less than 2 periods
 HoltWinters(ts)
Error in decompose(ts(x[1L:wind], start = start(x), frequency = f),
seasonal) : 
  time series has no or less than 2 periods

is it true that order of ar(ts) function  is p-value used for arma(p,q)
calculation
 ar(ts)

Call:
ar(x = ts)

Coefficients:
  12345678   
9   10   11  
-0.0979  -0.0380  -0.1823  -0.1096   0.1806   0.0414  -0.1439   0.1093  
0.0348  -0.1580   0.2900  

Order selected 11  sigma^2 estimated as  0.4339 

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[R] how to decide best order for ma(x, order, centre=TRUE) in time series

2012-03-21 Thread sagarnikam123
when fitting an autoregressive time series model to the data i.e. in function
ma(x, order, centre=TRUE)
i attached file (time series data)
http://r.789695.n4.nabble.com/file/n4491858/tinku.txt tinku.txt 
how to decide best order for a good time series model
which would be valuable for arma() process



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[R] how to find order of the autoregressive process in r

2012-03-20 Thread sagarnikam123
if i have time series,the give me code example for finding auto-regressive
process 

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[R] what is p,d q in arima() function of time series

2012-03-19 Thread sagarnikam123
i am new to time series
i found in help about arima
arima(x = data, order = c(p, d, q))


what is exactly p,d,q? if i not changed them,what effects will happens?

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[R] How to cluster/classify following time series?

2012-03-19 Thread sagarnikam123
how to cluster/classify attached time series ?(each column/time series
consider as single unit while clustering/classifying)
 if my concept is wrong,tell me how to extract time series with highest
information content ?


given file is  to do it
http://r.789695.n4.nabble.com/file/n4484173/rasta.txt rasta.txt 

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[R] how to bind uneven column (not equal length) into matrix without recycling values

2012-03-15 Thread sagarnikam123
i have 
 x
[1] 1 2 3 4 5 6
 y
[1] 34  5  6
 z-cbind(x,y)
 z
 x  y
[1,] 1 34
[2,] 2  5
[3,] 3  6
[4,] 4 34
[5,] 5  5
[6,] 6  6

i don't want recycling, instead can we put NA /0 like below z
 x  y
[1,] 1 34
[2,] 2  5
[3,] 3  6
[4,] 4  NA
[5,] 5  NA
[6,] 6  NA

 want distance matrix


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Re: [R] how to find best model of time series?giving error

2012-03-14 Thread sagarnikam123
yes but giving error
 t-read.table(file.choose())
 t-ts(t)
 plot(t)
Hit Return to see next plot: 
 ht-HoltWinters(t)
Error in decompose(ts(x[1L:wind], start = start(x), frequency = f),
seasonal) : 
  time series has no or less than 2 periods

what should i do? 

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[R] not saving plot with resizable size?

2012-03-14 Thread sagarnikam123
i want to save plots in batch mode(100 plots in single code) in resizable
mode
which format should i use,i m working on windows

 savePlot(zatka,type=pdf,device=dev.cur())
Error in savePlot(zatka, type = pdf, device = dev.cur()) : 
  can only copy from 'windows' devices

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[R] how to calculate AIC value from below values using time series model

2012-03-14 Thread sagarnikam123
t 
-0.15264004 
0.056076439 
-0.07276116 
-0.00917326 
-0.02069089 
-0.00416232 
-0.07225855 
-0.02654577 
-0.06131410 
-0.09380202 
0.057414014 
-0.05239976 
0.014397612 
0.016145161 
-0.00670587 
0.018696335 
0.036943654 
-0.02450233 
0.031161705 
0.006513503 
-0.02892329 
-0.00831519 
-0.00877744 
-0.00634399 
-0.02612019 
-0.02531800 
-0.01435533 
0.011148840 
-0.01893775 
0.029859128 
0.029878797 
-0.00125987 
0.031404385 
0.035127606 
-0.00191775 
0.059797202 
-0.03268047 
-0.06026960 
-0.02216465 
-0.08145612 
-0.02772806 
-0.03171683 
-0.02842562 
-0.11807898 
-0.01457311 
-0.12612482 
0.409631265 
-0.06375234 

if i have 200 such t variable (which have time observations ranging from
100-400)  want to select best model,how should i select it?

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Re: [R] how to find best model of time series? calculate aic value, if i have

2012-03-14 Thread sagarnikam123
yes,but i want AIC value to calculate for below value, using frequency =1 in
ts() function
t 
-0.15264004 
0.056076439 
-0.07276116 
-0.00917326 
-0.02069089 
-0.00416232 
-0.07225855 
-0.02654577 
-0.06131410 
-0.09380202 
0.057414014 
-0.05239976 
0.014397612 
0.016145161 
-0.00670587 
0.018696335 
0.036943654 
-0.02450233 
0.031161705 
0.006513503 
-0.02892329 
-0.00831519 
-0.00877744 
-0.00634399 
-0.02612019 
-0.02531800 
-0.01435533 
0.011148840 
-0.01893775 
0.029859128 
0.029878797 
-0.00125987 
0.031404385 
0.035127606 
-0.00191775 
0.059797202 
-0.03268047 
-0.06026960 
-0.02216465 
-0.08145612 
-0.02772806 
-0.03171683 
-0.02842562 
-0.11807898 
-0.01457311 
-0.12612482 
0.409631265 
-0.06375234 


in short, i want to know which is best model if i have this type of
vectors(t) 200,each having 400 observations at respective time i.e.
1,2,3,4.400


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[R] how to find best model of time series?

2012-03-13 Thread sagarnikam123
i have data in one file below like   (i have such type of file =200,each
file have below type of data)
t
-0.15264004
0.056076439
-0.07276116
-0.00917326
-0.02069089
-0.00416232
-0.07225855
-0.02654577
-0.06131410
-0.09380202
0.057414014
-0.05239976
0.014397612
0.016145161
-0.00670587
0.018696335
0.036943654
-0.02450233
0.031161705
0.006513503
-0.02892329
-0.00831519
-0.00877744
-0.00634399
-0.02612019
-0.02531800
-0.01435533
0.011148840
-0.01893775
0.029859128
0.029878797
-0.00125987
0.031404385
0.035127606
-0.00191775
0.059797202
-0.03268047
-0.06026960
-0.02216465
-0.08145612
-0.02772806
-0.03171683
-0.02842562
-0.11807898
-0.01457311
-0.12612482
0.409631265
-0.06375234

plot.ts(t)

i am new to time series,i get plot,but don't know which pattern this is?
tell me how to determine type of time series(seasonal,trend,irregular,etc)
 from 200 such file/plot ,which model should i select as best model for
forecasting future events




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[R] how to run system command

2012-03-06 Thread sagarnikam123
i run like ,but it giving other than what i expect
i also want to capture output  print it

 e-system(date)
 e
[1] 127


 e-system(dir)
 e
[1] 127

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[R] how to used regular expression while reading file

2012-03-06 Thread sagarnikam123
i have file as in txt format

@ATTRIBUTE f1996 REAL
@ATTRIBUTE f1997 REAL
@ATTRIBUTE f1998 REAL
@ATTRIBUTE f1999 REAL
@ATTRIBUTE f2000 REAL
@ATTRIBUTE class {-1,1}

@DATA
2.080750,1.099070,0.927763,1.029080,-0.130763,1.265460,-0.43
1.109460,0.786453,0.445560,-0.146323,-0.996316,0.555759,0.29
-0.676530,1.693100,1.559250,1.559980,-0.982179,-1.358510,-1.
0.534396,1.677540,1.489030,0.778605,-0.183776,-1.116850,-1.4
-1.018900,0.511080,0.755641,1.013820,0.529899,0.160440,-0.08
-1.185370,-0.514473,-0.566634,1.224720,0.619244,-0.684713,-0
1.779050,0.423947,0.820696,2.525690,0.666921,0.661346,0.4253
--

i want to parse only numbers not starting with @
like

2.080750,1.099070,0.927763,1.029080,-0.130763,1.265460,-0.43
1.109460,0.786453,0.445560,-0.146323,-0.996316,0.555759,0.29
-0.676530,1.693100,1.559250,1.559980,-0.982179,-1.358510,-1.
0.534396,1.677540,1.489030,0.778605,-0.183776,-1.116850,-1.4
-1.018900,0.511080,0.755641,1.013820,0.529899,0.160440,-0.08
-1.185370,-0.514473,-0.566634,1.224720,0.619244,-0.684713,-0
1.779050,0.423947,0.820696,2.525690,0.666921,0.661346,0.4253

 putting numbers only  in array for each line

how should i assess (read)  file


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Re: [R] how to run system command

2012-03-06 Thread sagarnikam123
i used it on windows system, but giving error like

 e - system(date, intern=TRUE) 
Error in system(date, intern = TRUE) : 'date' not found

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[R] how to see inbuilt function(cor.test) how to get p-value from t-value(test of significance) ?

2012-03-06 Thread sagarnikam123
i can see source code of function

 cor
function (x, y = NULL, use = everything, method = c(pearson, 
kendall, spearman)) 
{
na.method - pmatch(use, c(all.obs, complete.obs,
pairwise.complete.obs, 
everything, na.or.complete))
-
but for cor.test,i gives

 cor.test
function (x, ...) 
UseMethod(cor.test)
bytecode: 0x05a5bff8
environment: namespace:stats

-
i want p-value calculation formula also,i have t-values(test of
significance) 


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[R] how to append element at last position in array dynamically

2012-02-28 Thread sagarnikam123
 h-array()
 h
[1] NA
 append(h,9)
[1] NA  9

but what it append.
 h
[1] NA


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[R] how to get file name/file path

2012-02-28 Thread sagarnikam123
i open a table
table-read.table(file.choose(),skip=1)

at  sometime i forget which file i open,so i want file name/file path 



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[R] how to read file append at specified positon

2012-02-27 Thread sagarnikam123
i have one file as
 munnabhai-read.table(hyphen[1],skip=1)
 munnabhai
 V1 V2  V3 V4 V5   V6 V7
1 1 12AS_A   4  A0.0  157.8994119  2
2 2 12AS_A   5  Y  -41.61818  -56.8011795  1
3 3 12AS_A   6  I  -55.47021  -51.1328352  1
4 4 12AS_A   7  A  -54.43085  -58.3428366  1
5 5 12AS_A   8  K  -54.31525  -39.2709474  1
6 6 12AS_A   9  Q  -61.37700  -33.5304490  1
7 7 12AS_A  10  R  -86.14173  -32.3448242  1
8 8 12AS_A  11  Q  -52.88589  -57.2830246  1

want to read v7 vector  add V8,
 edit it as in the same file

 V1 V2  V3 V4 V5   V6 V7V8
1 1 12AS_A   4  A0.0  157.8994119  22.3  
2 2 12AS_A   5  Y  -41.61818  -56.8011795  145.5
3 3 12AS_A   6  I  -55.47021  -51.1328352  178.5
4 4 12AS_A   7  A  -54.43085  -58.3428366  17.3
5 5 12AS_A   8  K  -54.31525  -39.2709474  18.9
6 6 12AS_A   9  Q  -61.37700  -33.5304490  14.5 
7 7 12AS_A  10  R  -86.14173  -32.3448242  17.3 
8 8 12AS_A  11  Q  -52.88589  -57.2830246  11.0


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[R] how to make hash? append element, if i want following condition

2012-02-22 Thread sagarnikam123
i want hash like
A  :  1.2, 3.4, 4.5
B  :  9.7, 5.6, 4.8
C  :  3.4 ,5.7, 4.6

where A key contain all three value at right sight 

how to append single keys  values if i have predefined hash with known
length

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Re: [R] how to make hash? append element, if i want following condition

2012-02-22 Thread sagarnikam123
i did it, but using hash package ,i got error like
 
hash1 - new.env() 
 hash1$A - c(1.2, 3.4, 4.5) 
 hash1$A
[1] 1.2 3.4 4.5

 h-hash(keys=c(A,B),values=c(hash1$A,hash1$A)  )
Error in .set(h, ...) : Keys of length 2 do not match values of length 6

how should i proceed


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[R] how to identify which value is missing from array/variable

2012-02-19 Thread sagarnikam123
i have variable  C  as  
 c
 [1]  1  2  3  6  7  8 12 13 14 15 16 17 18


 want to check variable sequentially for missing values/integers  reporting
their positions,
latter on,i  want to fill with appropriate /missed values increasingly.

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[R] how to delete all classes variables in current previously saved history?

2012-02-19 Thread sagarnikam123
i have variables stored in previous history,next time i log in, load
previous history,i want to use same variable name for using other values,
 i don't know exactly how many are they ?  their names also..

How to delete all variable created in current  previous session i.e. (known
 unknown) which form up-to current state?

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[R] how to made .exe of any gui project in R

2012-02-10 Thread sagarnikam123
i made jDialog through JGR package(Java gui 4 R), 
i want to export it with imported external package e.g.bio3d,RCOR , into
.exe 

or if not possible convert code to executable jar file 
how should i go, give me package name,example codes (if possible) 

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[R] which R package is used for browsing web pages through coding

2012-02-09 Thread sagarnikam123
i know RCurl pakage to retrieve web content,it has limited use, i want
interactive package like

(in perl---Mechanize,
In java---Watij,Prowser,HTMLunit,HTTPunit,
in RubyWatir ,etc)

this modules/packages opens appropriate browser,which can create
queries,retrieves output, clicks buttons, fill up form
automatically,searches keyword in search engine, Downloads many items from
internet
All this is by coding 

if find ,kindly give me sample examples(codes) at list two/five
if not found,give me RCurl's sample codes starting from how to import
library to closing browser,
with explanation for each line of code



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[R] which R package is used for browsing web pages through coding

2012-02-07 Thread sagarnikam123
Perl has Mechanize module which browse web pages through
programming(coding),creates queries  retrives data through it

which R package support web browsing through programming 

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[R] appending variable's values in table like fashion

2012-02-06 Thread sagarnikam123
i have two variable
 pyar
[1] M  12 34 13
 gita
[1] U  22 33 44
want to append gita object below pyar object as
 want to take in anther variable

 M  12 34 13
 U  22 33 44

 write it in table fashion inside file

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[R] how to avoid writing index in write.table command

2012-02-05 Thread sagarnikam123
how to avoid writing index of variable in write.table command,
e.g. output---

index,character,state
1 M 2
2 K 3
3 R 1
4 E 1
5 S 1
6 H 1
7 K 1
8 H 1
9 A 1
10 E 3
11 Q 1

i tried col.name=FALSE  row.name=FALSE but it can't


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[R] i want to retrieve count for each freq of given summary from table()

2012-02-05 Thread sagarnikam123
i want to retrieve count for each freq of given summary from table() e.g. A
cout,B count
 save it in different variables
 table(dil)
dil
A C D E F G H I K L M N
P Q 
49433 10361 38490 44549 27182 44947 16310 39002 39829 58805 11228 29320
28900 25802 
R S T V W X Y 
32674 40066 36052 45866  9405 1 23885 

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[R] want to drop levels of table vector join two vector(appending)

2012-02-04 Thread sagarnikam123
is have vector from table stored in s variable
 s
 [1] R P Y A C P V E S C D R R F S R S A D L T R H I R I
Levels: A C D E F G H I K L M N P Q R S T V Y

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[R] iterating through for loop

2012-02-03 Thread sagarnikam123
how to iterate two elements each through for loop?
e.g. x-c(1,2,4,7,34,6)
y-c(3,5,6,9,34,7)

for(z in x){
print(paste(z,y))  }


i want both element of vector iterate serially with same position


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