Re: [R] Sometimes commands do not terminate after upgrading to R 4.0 and Ubuntu 20.04
Adrien,
you posted this same item 3 days ago to this list. And someone responded to
it.
Why are you posting the identical thing again to this list?
As Bert writes, you should post to the r-sig-debian list.
Eric
On Wed, May 13, 2020 at 4:38 AM Bert Gunter wrote:
> Please, please, please ... RStudio is a wholly separate product from
> R. Post on their website if you think Rstudio has problems. And ubuntu
> concerns should be posted on r-sig-debian, not here! This list is
> about R programming issues (mostly).
>
> Bert Gunter
>
> "The trouble with having an open mind is that people keep coming along
> and sticking things into it."
> -- Opus (aka Berkeley Breathed in his "Bloom County" comic strip )
>
> On Tue, May 12, 2020 at 6:07 PM Adrien FABRE wrote:
> >
> > I have upgraded R (from 3.6 to 4.0) and RStudio (from 1.1 to 1.2.5) a few
> > days ago, and Ubuntu from 18.04 to 20.04 yesterday.
> >
> > Since then, R sometimes never terminates when executing certain commands:
> > ivreg (from package AER), summary (of a logit regression) and logitmfx
> > (from package mfx). Sometimes these commands run fine, but most of the
> time
> > I have to kill the process because R won't terminate the execution, even
> > when pressing the red Stop button in RStudio.
> >
> > When I tried example('AER'), it worked fine. Then I re-installed the
> > package AER. It threw 10 warnings of type In readLines(file, skipNul =
> > TRUE) : cannot open compressed file
> > '/usr/lib/R/site-library/[package]/DESCRIPTION', probable reason 'No such
> > file or directory' where [package] is abind, colorspace, dichromat...
> (but
> > not AER).
> >
> > Since then example('AER') throws a warning: no help found for ‘AER’.
> >
> > I've removed and reinstalled R 4.0: it didn't help. Besides, the apt
> purge
> > r-base* r-recommended r-cran-* threw a warning: dpkg: warning: while
> > removing r-base-core, directory '/usr/lib/R/site-library' not empty so
> not
> > removed. Also, there was a bunch of Package [package] is not installed,
> so
> > not removed, including for [package] equal to r-cran-abind and the other
> > listed above (this purge also returned a bunch of Note, selecting
> [package]
> > for glob 'r-cran-*').
> >
> > I have the same bug when using R from the terminal. For the record, I was
> > probably working on RStudio during the upgrade to Ubuntu 20.04. Also, I
> > can't recall if this issue started after I upgraded R and RStudio (which
> > would be my best guess) or after I upgraded Ubuntu (a day or two later).
> >
> > I hope someone can help.
> >
> > --
> > Adrien Fabre
> >
> > École d'Économie de Paris/Paris School of Economics – Université Paris 1
> > (R4-47)
> >
> > Page personnelle/Home page
> > (+33/0)6.10.37.90.51
> >
> > [[alternative HTML version deleted]]
> >
> > __
> > R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see
> > https://stat.ethz.ch/mailman/listinfo/r-help
> > PLEASE do read the posting guide
> http://www.R-project.org/posting-guide.html
> > and provide commented, minimal, self-contained, reproducible code.
>
> __
> R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see
> https://stat.ethz.ch/mailman/listinfo/r-help
> PLEASE do read the posting guide
> http://www.R-project.org/posting-guide.html
> and provide commented, minimal, self-contained, reproducible code.
>
[[alternative HTML version deleted]]
__
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PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
and provide commented, minimal, self-contained, reproducible code.
Re: [R] Sometimes commands do not terminate after upgrading to R 4.0 and Ubuntu 20.04
Please, please, please ... RStudio is a wholly separate product from
R. Post on their website if you think Rstudio has problems. And ubuntu
concerns should be posted on r-sig-debian, not here! This list is
about R programming issues (mostly).
Bert Gunter
"The trouble with having an open mind is that people keep coming along
and sticking things into it."
-- Opus (aka Berkeley Breathed in his "Bloom County" comic strip )
On Tue, May 12, 2020 at 6:07 PM Adrien FABRE wrote:
>
> I have upgraded R (from 3.6 to 4.0) and RStudio (from 1.1 to 1.2.5) a few
> days ago, and Ubuntu from 18.04 to 20.04 yesterday.
>
> Since then, R sometimes never terminates when executing certain commands:
> ivreg (from package AER), summary (of a logit regression) and logitmfx
> (from package mfx). Sometimes these commands run fine, but most of the time
> I have to kill the process because R won't terminate the execution, even
> when pressing the red Stop button in RStudio.
>
> When I tried example('AER'), it worked fine. Then I re-installed the
> package AER. It threw 10 warnings of type In readLines(file, skipNul =
> TRUE) : cannot open compressed file
> '/usr/lib/R/site-library/[package]/DESCRIPTION', probable reason 'No such
> file or directory' where [package] is abind, colorspace, dichromat... (but
> not AER).
>
> Since then example('AER') throws a warning: no help found for ‘AER’.
>
> I've removed and reinstalled R 4.0: it didn't help. Besides, the apt purge
> r-base* r-recommended r-cran-* threw a warning: dpkg: warning: while
> removing r-base-core, directory '/usr/lib/R/site-library' not empty so not
> removed. Also, there was a bunch of Package [package] is not installed, so
> not removed, including for [package] equal to r-cran-abind and the other
> listed above (this purge also returned a bunch of Note, selecting [package]
> for glob 'r-cran-*').
>
> I have the same bug when using R from the terminal. For the record, I was
> probably working on RStudio during the upgrade to Ubuntu 20.04. Also, I
> can't recall if this issue started after I upgraded R and RStudio (which
> would be my best guess) or after I upgraded Ubuntu (a day or two later).
>
> I hope someone can help.
>
> --
> Adrien Fabre
>
> École d'Économie de Paris/Paris School of Economics – Université Paris 1
> (R4-47)
>
> Page personnelle/Home page
> (+33/0)6.10.37.90.51
>
> [[alternative HTML version deleted]]
>
> __
> R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see
> https://stat.ethz.ch/mailman/listinfo/r-help
> PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
> and provide commented, minimal, self-contained, reproducible code.
__
R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see
https://stat.ethz.ch/mailman/listinfo/r-help
PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
and provide commented, minimal, self-contained, reproducible code.
[R] Sometimes commands do not terminate after upgrading to R 4.0 and Ubuntu 20.04
I have upgraded R (from 3.6 to 4.0) and RStudio (from 1.1 to 1.2.5) a few
days ago, and Ubuntu from 18.04 to 20.04 yesterday.
Since then, R sometimes never terminates when executing certain commands:
ivreg (from package AER), summary (of a logit regression) and logitmfx
(from package mfx). Sometimes these commands run fine, but most of the time
I have to kill the process because R won't terminate the execution, even
when pressing the red Stop button in RStudio.
When I tried example('AER'), it worked fine. Then I re-installed the
package AER. It threw 10 warnings of type In readLines(file, skipNul =
TRUE) : cannot open compressed file
'/usr/lib/R/site-library/[package]/DESCRIPTION', probable reason 'No such
file or directory' where [package] is abind, colorspace, dichromat... (but
not AER).
Since then example('AER') throws a warning: no help found for ‘AER’.
I've removed and reinstalled R 4.0: it didn't help. Besides, the apt purge
r-base* r-recommended r-cran-* threw a warning: dpkg: warning: while
removing r-base-core, directory '/usr/lib/R/site-library' not empty so not
removed. Also, there was a bunch of Package [package] is not installed, so
not removed, including for [package] equal to r-cran-abind and the other
listed above (this purge also returned a bunch of Note, selecting [package]
for glob 'r-cran-*').
I have the same bug when using R from the terminal. For the record, I was
probably working on RStudio during the upgrade to Ubuntu 20.04. Also, I
can't recall if this issue started after I upgraded R and RStudio (which
would be my best guess) or after I upgraded Ubuntu (a day or two later).
I hope someone can help.
--
Adrien Fabre
École d'Économie de Paris/Paris School of Economics – Université Paris 1
(R4-47)
Page personnelle/Home page
(+33/0)6.10.37.90.51
[[alternative HTML version deleted]]
__
R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see
https://stat.ethz.ch/mailman/listinfo/r-help
PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
and provide commented, minimal, self-contained, reproducible code.
Re: [R] Sometimes commands do not terminate after upgrading to R 4.0 and Ubuntu 20.04
> "Adrien" == Adrien FABRE writes:
Adrien> I have upgraded R (from 3.6 to 4.0) and RStudio (from 1.1 to 1.2.5) a
few
Adrien> days ago, and Ubuntu from 18.04 to 20.04 yesterday.
Adrien> Since then, R sometimes never terminates when executing certain
commands:
Adrien> ivreg (from package AER), summary (of a logit regression) and logitmfx
Adrien> (from package mfx). Sometimes these commands run fine, but most of
the time
Adrien> I have to kill the process because R won't terminate the execution,
even
Adrien> when pressing the red Stop button in RStudio.
Adrien> When I tried example('AER'), it worked fine. Then I re-installed the
Adrien> package AER. It threw 10 warnings of type In readLines(file, skipNul =
Adrien> TRUE) : cannot open compressed file
Adrien> '/usr/lib/R/site-library/[package]/DESCRIPTION', probable reason 'No
such
Adrien> file or directory' where [package] is abind, colorspace, dichromat...
(but
Adrien> not AER).
Adrien> Since then example('AER') throws a warning: no help found for ‘AER’.
Adrien> I've removed and reinstalled R 4.0: it didn't help. Besides, the apt
purge
Adrien> r-base* r-recommended r-cran-* threw a warning: dpkg: warning: while
Adrien> removing r-base-core, directory '/usr/lib/R/site-library' not empty
so not
Adrien> removed. Also, there was a bunch of Package [package] is not
installed, so
Adrien> not removed, including for [package] equal to r-cran-abind and the
other
Adrien> listed above (this purge also returned a bunch of Note, selecting
[package]
Adrien> for glob 'r-cran-*').
Adrien> I have the same bug when using R from the terminal. For the record, I
was
Adrien> probably working on RStudio during the upgrade to Ubuntu 20.04. Also,
I
Adrien> can't recall if this issue started after I upgraded R and RStudio
(which
Adrien> would be my best guess) or after I upgraded Ubuntu (a day or two
later).
Adrien> I hope someone can help.
There has been a discussion on R-SIG-Debian recently,
and /perhaps/ it is related to your troubles.
See https://stat.ethz.ch/pipermail/r-sig-debian/2020-April/003159.html
and in particular
https://stat.ethz.ch/pipermail/r-sig-debian/2020-April/003166.html
.
--
Enrico Schumann
Lucerne, Switzerland
http://enricoschumann.net
__
R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see
https://stat.ethz.ch/mailman/listinfo/r-help
PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
and provide commented, minimal, self-contained, reproducible code.
[R] Sometimes commands do not terminate after upgrading to R 4.0 and Ubuntu 20.04
I have upgraded R (from 3.6 to 4.0) and RStudio (from 1.1 to 1.2.5) a few
days ago, and Ubuntu from 18.04 to 20.04 yesterday.
Since then, R sometimes never terminates when executing certain commands:
ivreg (from package AER), summary (of a logit regression) and logitmfx
(from package mfx). Sometimes these commands run fine, but most of the time
I have to kill the process because R won't terminate the execution, even
when pressing the red Stop button in RStudio.
When I tried example('AER'), it worked fine. Then I re-installed the
package AER. It threw 10 warnings of type In readLines(file, skipNul =
TRUE) : cannot open compressed file
'/usr/lib/R/site-library/[package]/DESCRIPTION', probable reason 'No such
file or directory' where [package] is abind, colorspace, dichromat... (but
not AER).
Since then example('AER') throws a warning: no help found for ‘AER’.
I've removed and reinstalled R 4.0: it didn't help. Besides, the apt purge
r-base* r-recommended r-cran-* threw a warning: dpkg: warning: while
removing r-base-core, directory '/usr/lib/R/site-library' not empty so not
removed. Also, there was a bunch of Package [package] is not installed, so
not removed, including for [package] equal to r-cran-abind and the other
listed above (this purge also returned a bunch of Note, selecting [package]
for glob 'r-cran-*').
I have the same bug when using R from the terminal. For the record, I was
probably working on RStudio during the upgrade to Ubuntu 20.04. Also, I
can't recall if this issue started after I upgraded R and RStudio (which
would be my best guess) or after I upgraded Ubuntu (a day or two later).
I hope someone can help.
[[alternative HTML version deleted]]
__
R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see
https://stat.ethz.ch/mailman/listinfo/r-help
PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
and provide commented, minimal, self-contained, reproducible code.
