Re: [R] 140 packages in R Commander!!
Hi John Its not the download I mind - it's a one shot thing- Could you think of integrating the help across plugins- that can help. For example I really want to know which plugin would use snow and foreach if at all Ajay Websites- http://decisionstats.com http://dudeofdata.com Linkedin- www.linkedin.com/in/ajayohri On Mon, Oct 25, 2010 at 4:54 AM, John Fox j...@mcmaster.ca wrote: Dear Ajay, This is a consequence of installing the dependencies (including suggested packages, etc.) of the Rcmdr package, their dependencies, and so on recursively. The alternative would be for the Rcmdr package to specify its direct dependencies via depends rather than suggests, but then these dependencies would be loaded whenever the Rcmdr is loaded. If you have a better idea, I'm certainly open to it, since many, probably most, of the packages that get installed aren't really needed by the Rcmdr or by the packages on which it directly depends. The whole business takes about 10 minutes on my not-all-that-fast Internet connection and occupies about 250 MB (considerably less than 10 US cents at today's hard-disk prices), which doesn't seem terrible to me. Best, John John Fox Senator William McMaster Professor of Social Statistics Department of Sociology McMaster University Hamilton, Ontario, Canada web: socserv.mcmaster.ca/jfox -Original Message- From: r-help-boun...@r-project.org [mailto:r-help-boun...@r-project.org] On Behalf Of Ajay Ohri Sent: October-24-10 12:47 PM To: R-help@r-project.org Subject: [R] 140 packages in R Commander!! Dear List I just downloaded and installed R 2.12.0 and then installed R Commander . First it got RCmdr and Car, and then suggested for other packages for utilizing the full functionality- I clicked yes! I got 140 packages installed!!! Cran Mirror was UCLA... Here is the list. Is this intentional- I can see some packages like snow and multicore which are desirable but quite optional.(see list below) Regards Ajay 'slam' 'fBasics' 'bitops' 'Rglpk' 'snowFT' 'rlecuyer' 'rsprng' 'nws' 'tweedie' 'gtools' 'gdata' 'caTools' 'Ecdat' 'ergm' 'latentnet' 'degreenet' 'shapes' 'snow' 'RColorBrewer' 'statmod' 'cubature' 'kinship' 'gam' 'tripack' 'akima' 'logspline' 'gplots' 'maxLik' 'miscTools' 'sem' 'rgdal' 'network' 'numDeriv' 'statnet' 'rgenoud' 'hexbin' 'ellipse' 'gclus' 'mlbench' 'randomForest' 'SparseM' 'Formula' 'ineq' 'mlogit' 'np' 'plm' 'pscl' 'quantreg' 'ROCR' 'sampleSelection' 'scatterplot3d' 'systemfit' 'truncreg' 'urca' 'oz' 'fUtilities' 'fEcofin' 'RUnit' 'quadprog' 'iterators' 'locfit' 'maps' 'rcom' 'rscproxy' 'sp' 'VGAM' 'MCMCpack' 'sna' 'gee' 'anchors' 'survey' 'ape' 'flexmix' 'rmeta' 'mlmRev' 'MEMSS' 'coda' 'party' 'ipred' 'modeltools' 'e1071' 'AER' 'bdsmatrix' 'DAAG' 'fCalendar' 'fSeries' 'fts' 'its' 'timeDate' 'timeSeries' 'tis' 'tseries' 'xts' 'foreach' 'TSA' 'RSQLite' 'tkrplot' 'sgeostat' 'mapproj' 'tcltk2' 'R2wd' 'png' 'tree' 'VIM' 'mitools' 'Zelig' 'HSAUR' 'mvtnorm' 'lme4' 'robustbase' 'mboost' 'coin' 'xtable' 'sandwich' 'coxme' 'zoo' 'strucchange' 'dynlm' 'biglm' 'chron' 'acepack' 'TeachingDemos' 'Design' 'mice' 'subselect' 'kernlab' 'vcd' 'rgl' 'relimp' 'multcomp' 'lmtest' 'leaps' 'Hmisc' 'effects' 'colorspace' 'aplpack' 'abind' 'RODBC' car Rcmdr Websites- http://decisionstats.com http://dudeofdata.com Linkedin- www.linkedin.com/in/ajayohri On Sun, Oct 24, 2010 at 9:27 PM, Marcelo Lima mlim...@gmail.com wrote: Hi all, I generated a covariance matrix and visualized as a 2D contour plot (x,y, covariance matrix), I would like to extract from the matrix the values ( in x and y) that auto-correlate which I will plot as an normal (x,y(being the values that auto-corelate to a certain x and y values in my original matrix). Any suggestions? Cheers, Marcelo -- Marcelo Andrade de Lima UNIFESP - Universidade Federal de Sco Paulo Departamento de Bioqummica Disciplina de Biologia Molecular Rua Trjs de Maio 100, 4 andar - Vila Clementino, 04044-020 Lab +55 11 55764438 R.1188 Cell +55 11 92725274 ml...@unifesp.br [[alternative HTML version deleted]] __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code. [[alternative HTML version deleted]] [[alternative HTML version deleted]] __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
Re: [R] 140 packages in R Commander!!
Dear Ajay, Each of the Rcmdr plug-ins is an R package with its own dependencies, which you can check on CRAN. Since dependencies can have dependencies, etc., you'd have to be careful in drawing conclusions. I'm not sure what the help system has to do with it. Best, John John Fox Senator William McMaster Professor of Social Statistics Department of Sociology McMaster University Hamilton, Ontario, Canada web: socserv.mcmaster.ca/jfox -Original Message- From: Ajay Ohri [mailto:ohri2...@gmail.com] Sent: October-25-10 11:17 AM To: John Fox Cc: R-help@r-project.org Subject: Re: [R] 140 packages in R Commander!! Hi John Its not the download I mind - it's a one shot thing- Could you think of integrating the help across plugins- that can help. For example I really want to know which plugin would use snow and foreach if at all Ajay Websites- http://decisionstats.com http://dudeofdata.com Linkedin- www.linkedin.com/in/ajayohri On Mon, Oct 25, 2010 at 4:54 AM, John Fox j...@mcmaster.ca wrote: Dear Ajay, This is a consequence of installing the dependencies (including suggested packages, etc.) of the Rcmdr package, their dependencies, and so on recursively. The alternative would be for the Rcmdr package to specify its direct dependencies via depends rather than suggests, but then these dependencies would be loaded whenever the Rcmdr is loaded. If you have a better idea, I'm certainly open to it, since many, probably most, of the packages that get installed aren't really needed by the Rcmdr or by the packages on which it directly depends. The whole business takes about 10 minutes on my not-all-that-fast Internet connection and occupies about 250 MB (considerably less than 10 US cents at today's hard-disk prices), which doesn't seem terrible to me. Best, John John Fox Senator William McMaster Professor of Social Statistics Department of Sociology McMaster University Hamilton, Ontario, Canada web: socserv.mcmaster.ca/jfox -Original Message- From: r-help-boun...@r-project.org [mailto:r-help-boun...@r- project.org] On Behalf Of Ajay Ohri Sent: October-24-10 12:47 PM To: R-help@r-project.org Subject: [R] 140 packages in R Commander!! Dear List I just downloaded and installed R 2.12.0 and then installed R Commander . First it got RCmdr and Car, and then suggested for other packages for utilizing the full functionality- I clicked yes! I got 140 packages installed!!! Cran Mirror was UCLA... Here is the list. Is this intentional- I can see some packages like snow and multicore which are desirable but quite optional.(see list below) Regards Ajay 'slam' 'fBasics' 'bitops' 'Rglpk' 'snowFT' 'rlecuyer' 'rsprng' 'nws' 'tweedie' 'gtools' 'gdata' 'caTools' 'Ecdat' 'ergm' 'latentnet' 'degreenet' 'shapes' 'snow' 'RColorBrewer' 'statmod' 'cubature' 'kinship' 'gam' 'tripack' 'akima' 'logspline' 'gplots' 'maxLik' 'miscTools' 'sem' 'rgdal' 'network' 'numDeriv' 'statnet' 'rgenoud' 'hexbin' 'ellipse' 'gclus' 'mlbench' 'randomForest' 'SparseM' 'Formula' 'ineq' 'mlogit' 'np' 'plm' 'pscl' 'quantreg' 'ROCR' 'sampleSelection' 'scatterplot3d' 'systemfit' 'truncreg' 'urca' 'oz' 'fUtilities' 'fEcofin' 'RUnit' 'quadprog' 'iterators' 'locfit' 'maps' 'rcom' 'rscproxy' 'sp' 'VGAM' 'MCMCpack' 'sna' 'gee' 'anchors' 'survey' 'ape' 'flexmix' 'rmeta' 'mlmRev' 'MEMSS' 'coda' 'party' 'ipred' 'modeltools' 'e1071' 'AER' 'bdsmatrix' 'DAAG' 'fCalendar' 'fSeries' 'fts' 'its' 'timeDate' 'timeSeries' 'tis' 'tseries' 'xts' 'foreach' 'TSA' 'RSQLite' 'tkrplot' 'sgeostat' 'mapproj' 'tcltk2' 'R2wd' 'png' 'tree' 'VIM' 'mitools' 'Zelig' 'HSAUR' 'mvtnorm' 'lme4' 'robustbase' 'mboost' 'coin' 'xtable' 'sandwich' 'coxme' 'zoo' 'strucchange' 'dynlm' 'biglm' 'chron' 'acepack' 'TeachingDemos' 'Design' 'mice' 'subselect' 'kernlab' 'vcd' 'rgl' 'relimp' 'multcomp' 'lmtest' 'leaps' 'Hmisc' 'effects' 'colorspace' 'aplpack' 'abind' 'RODBC' car Rcmdr Websites- http://decisionstats.com http://dudeofdata.com Linkedin- www.linkedin.com/in/ajayohri On Sun, Oct 24, 2010 at 9:27 PM, Marcelo Lima mlim...@gmail.com wrote: Hi all, I generated a covariance matrix and visualized as a 2D contour plot (x,y, covariance matrix), I would like to extract from
[R] 140 packages in R Commander!!
Dear List I just downloaded and installed R 2.12.0 and then installed R Commander . First it got RCmdr and Car, and then suggested for other packages for utilizing the full functionality- I clicked yes! I got 140 packages installed!!! Cran Mirror was UCLA... Here is the list. Is this intentional- I can see some packages like snow and multicore which are desirable but quite optional.(see list below) Regards Ajay 'slam' 'fBasics' 'bitops' 'Rglpk' 'snowFT' 'rlecuyer' 'rsprng' 'nws' 'tweedie' 'gtools' 'gdata' 'caTools' 'Ecdat' 'ergm' 'latentnet' 'degreenet' 'shapes' 'snow' 'RColorBrewer' 'statmod' 'cubature' 'kinship' 'gam' 'tripack' 'akima' 'logspline' 'gplots' 'maxLik' 'miscTools' 'sem' 'rgdal' 'network' 'numDeriv' 'statnet' 'rgenoud' 'hexbin' 'ellipse' 'gclus' 'mlbench' 'randomForest' 'SparseM' 'Formula' 'ineq' 'mlogit' 'np' 'plm' 'pscl' 'quantreg' 'ROCR' 'sampleSelection' 'scatterplot3d' 'systemfit' 'truncreg' 'urca' 'oz' 'fUtilities' 'fEcofin' 'RUnit' 'quadprog' 'iterators' 'locfit' 'maps' 'rcom' 'rscproxy' 'sp' 'VGAM' 'MCMCpack' 'sna' 'gee' 'anchors' 'survey' 'ape' 'flexmix' 'rmeta' 'mlmRev' 'MEMSS' 'coda' 'party' 'ipred' 'modeltools' 'e1071' 'AER' 'bdsmatrix' 'DAAG' 'fCalendar' 'fSeries' 'fts' 'its' 'timeDate' 'timeSeries' 'tis' 'tseries' 'xts' 'foreach' 'TSA' 'RSQLite' 'tkrplot' 'sgeostat' 'mapproj' 'tcltk2' 'R2wd' 'png' 'tree' 'VIM' 'mitools' 'Zelig' 'HSAUR' 'mvtnorm' 'lme4' 'robustbase' 'mboost' 'coin' 'xtable' 'sandwich' 'coxme' 'zoo' 'strucchange' 'dynlm' 'biglm' 'chron' 'acepack' 'TeachingDemos' 'Design' 'mice' 'subselect' 'kernlab' 'vcd' 'rgl' 'relimp' 'multcomp' 'lmtest' 'leaps' 'Hmisc' 'effects' 'colorspace' 'aplpack' 'abind' 'RODBC' car Rcmdr Websites- http://decisionstats.com http://dudeofdata.com Linkedin- www.linkedin.com/in/ajayohri On Sun, Oct 24, 2010 at 9:27 PM, Marcelo Lima mlim...@gmail.com wrote: Hi all, I generated a covariance matrix and visualized as a 2D contour plot (x,y, covariance matrix), I would like to extract from the matrix the values ( in x and y) that auto-correlate which I will plot as an normal (x,y(being the values that auto-corelate to a certain x and y values in my original matrix). Any suggestions? Cheers, Marcelo -- Marcelo Andrade de Lima UNIFESP - Universidade Federal de São Paulo Departamento de Bioquímica Disciplina de Biologia Molecular Rua Três de Maio 100, 4 andar - Vila Clementino, 04044-020 Lab +55 11 55764438 R.1188 Cell +55 11 92725274 ml...@unifesp.br [[alternative HTML version deleted]] __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code. [[alternative HTML version deleted]] __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
Re: [R] 140 packages in R Commander!!
Dear Ajay, This is a consequence of installing the dependencies (including suggested packages, etc.) of the Rcmdr package, their dependencies, and so on recursively. The alternative would be for the Rcmdr package to specify its direct dependencies via depends rather than suggests, but then these dependencies would be loaded whenever the Rcmdr is loaded. If you have a better idea, I'm certainly open to it, since many, probably most, of the packages that get installed aren't really needed by the Rcmdr or by the packages on which it directly depends. The whole business takes about 10 minutes on my not-all-that-fast Internet connection and occupies about 250 MB (considerably less than 10 US cents at today's hard-disk prices), which doesn't seem terrible to me. Best, John John Fox Senator William McMaster Professor of Social Statistics Department of Sociology McMaster University Hamilton, Ontario, Canada web: socserv.mcmaster.ca/jfox -Original Message- From: r-help-boun...@r-project.org [mailto:r-help-boun...@r-project.org] On Behalf Of Ajay Ohri Sent: October-24-10 12:47 PM To: R-help@r-project.org Subject: [R] 140 packages in R Commander!! Dear List I just downloaded and installed R 2.12.0 and then installed R Commander . First it got RCmdr and Car, and then suggested for other packages for utilizing the full functionality- I clicked yes! I got 140 packages installed!!! Cran Mirror was UCLA... Here is the list. Is this intentional- I can see some packages like snow and multicore which are desirable but quite optional.(see list below) Regards Ajay 'slam' 'fBasics' 'bitops' 'Rglpk' 'snowFT' 'rlecuyer' 'rsprng' 'nws' 'tweedie' 'gtools' 'gdata' 'caTools' 'Ecdat' 'ergm' 'latentnet' 'degreenet' 'shapes' 'snow' 'RColorBrewer' 'statmod' 'cubature' 'kinship' 'gam' 'tripack' 'akima' 'logspline' 'gplots' 'maxLik' 'miscTools' 'sem' 'rgdal' 'network' 'numDeriv' 'statnet' 'rgenoud' 'hexbin' 'ellipse' 'gclus' 'mlbench' 'randomForest' 'SparseM' 'Formula' 'ineq' 'mlogit' 'np' 'plm' 'pscl' 'quantreg' 'ROCR' 'sampleSelection' 'scatterplot3d' 'systemfit' 'truncreg' 'urca' 'oz' 'fUtilities' 'fEcofin' 'RUnit' 'quadprog' 'iterators' 'locfit' 'maps' 'rcom' 'rscproxy' 'sp' 'VGAM' 'MCMCpack' 'sna' 'gee' 'anchors' 'survey' 'ape' 'flexmix' 'rmeta' 'mlmRev' 'MEMSS' 'coda' 'party' 'ipred' 'modeltools' 'e1071' 'AER' 'bdsmatrix' 'DAAG' 'fCalendar' 'fSeries' 'fts' 'its' 'timeDate' 'timeSeries' 'tis' 'tseries' 'xts' 'foreach' 'TSA' 'RSQLite' 'tkrplot' 'sgeostat' 'mapproj' 'tcltk2' 'R2wd' 'png' 'tree' 'VIM' 'mitools' 'Zelig' 'HSAUR' 'mvtnorm' 'lme4' 'robustbase' 'mboost' 'coin' 'xtable' 'sandwich' 'coxme' 'zoo' 'strucchange' 'dynlm' 'biglm' 'chron' 'acepack' 'TeachingDemos' 'Design' 'mice' 'subselect' 'kernlab' 'vcd' 'rgl' 'relimp' 'multcomp' 'lmtest' 'leaps' 'Hmisc' 'effects' 'colorspace' 'aplpack' 'abind' 'RODBC' car Rcmdr Websites- http://decisionstats.com http://dudeofdata.com Linkedin- www.linkedin.com/in/ajayohri On Sun, Oct 24, 2010 at 9:27 PM, Marcelo Lima mlim...@gmail.com wrote: Hi all, I generated a covariance matrix and visualized as a 2D contour plot (x,y, covariance matrix), I would like to extract from the matrix the values ( in x and y) that auto-correlate which I will plot as an normal (x,y(being the values that auto-corelate to a certain x and y values in my original matrix). Any suggestions? Cheers, Marcelo -- Marcelo Andrade de Lima UNIFESP - Universidade Federal de Sco Paulo Departamento de Bioqummica Disciplina de Biologia Molecular Rua Trjs de Maio 100, 4 andar - Vila Clementino, 04044-020 Lab +55 11 55764438 R.1188 Cell +55 11 92725274 ml...@unifesp.br [[alternative HTML version deleted]] __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code. [[alternative HTML version deleted]] __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
