Re: [R] Can't read/write to _nonfi
#
sink (sinkFile)
cat ("\n\n*** Step 2 : Restricted population and sample correlation based on
cut off point = ", cutoffpoint, " on x axis \n\n")
# calculate sample mean of x
meanx1 = mean(retx)
stdx = stdsamplex(retx,length(retx))
# set first time through the loop equals to true
firstTime <- 1
newxindex <- 0;
for (i in 1:length(retx))
{
zscoreofx = zscoreforx(retx[i], meanx1, stdx)
#cat ("X ith = ", x[i])
#cat ("ZScore for x = ", ZScoreofX)
### transform the z score to Pnorm which will be used to compare with the
left of the cut off point
areaconfidenceinterval = pnormz(zscoreofx)
# Applied of cut off point on X
##
#cat ("Area of confident interval ", AreaConfidenceInterval)
result <- isarealeftofcutpoint(areaconfidenceinterval,cutoffpoint)
Getting result of new element in vector of x ,
# and new a new element in vector of y after applying
cut off point on x axis ###
#cat ("Result is ", result)
if (result == 1)
{
if (firstTime == 1)
{
index <- 1
firstTime <- 0
}
tempx <- x[i]
newx[index] <- tempx
tempy <- y[i]
newy[index] <- tempy
# cat("X = ", tempX, " ; Y = ", tempY, "\n\n")
# cat("Index = ", index, " ,NewX = ", NewX[index],", NewY = ",
NewY[index], "\n\n\n")
index <- index + 1
newxindex <- index
}
cat ("\n\n Element = " , i, " ; value = ", x[i], " ; Zscore value = ",
zscoreofx, "; Pnorm value = ", areaconfidenceinterval, " ; Included = ",
result, "\n")
}
newxx <- rep (0, newxindex -1)
newyy <- rep (0, newxindex - 1)
for (mycnt in 1: newxindex - 1)
{
newxx [mycnt] <- newx [mycnt]
newyy [mycnt] <- newy [mycnt]
}
vectornewxy <- data.frame (newxx,newyy,newxindex - 1)
cutoffsize [minh] <- newxindex -1
cat ("\n\n")
print (vectornewxy)
# check the sample correlation between x and y,and scatter plot
##print(paste("correlation", cor(NewY, NewX)))
correlationsampleaftercutoff <-
findcorrelationofsamplesizetaftercut(newxx,newyy,length(newxx))
cat("\n\ncorrelation of sample after cut off point is ",
correlationsampleaftercutoff)
sink ()
#hist(newxx)
#hist(newyy)
#plot(newxx, newyy)
dev.off()
fishercor <- fishercorrelation (correlationsampleaftercutoff)
sink (sinkFile)
cat ("\n\n*** Step 3 : Fisher correlation applied to sample correlation of the
cut off point = ", " on x axis \n\n")
cat ("\n\n Fisher correlation", fishercor,"\n")
fisherval [minh] <- fishercor
sink ()
sink (sinkFile)
cat ("\n\n*** END OF LOOP = ", minh, "
\n\n")
cat ("\n\n*** END OF LOOP = ", minh, "
\n\n")
sink ()
}
close(sinkFile)
Minh prgram after changed of open , close
of sinkFile ###
________________
From: William Dunlap [via R] [ml-node+2331833-526419113-138...@n4.nabble.com]
Sent: Thursday, August 19, 2010 1:33 PM
To: Dung Tran
Subject: Re: Can't read/write to _nonfi
Min,
For S+-specific questions the S-news mailing list
would be better.
[hidden email]
Unlike R, S+ stores its data objects in files, one file
per object. The ___nonfi (___nonfiles) file contains
a mapping for object names to file names, for those
objects whose names cannot be unambiguously used as
file names.
The copies of the error messages look garbled to me.
They are definitely missing some characters and I don't
see the "Can't access to ..." message in the S+ source
code, but perhaps I'm not looking in the right version
> Can' access to file _nonfi
> Can't create file for assigning "last.dump"
> ("C:/WORKSPACE/DUNG/.Data/___bd40"
What version of S+ are you using and what are the precise
error messages?
Do you own the C:/WORKSPACE/DUNG directory or is
it someone else's? If it is someone else's and it
is sufficiently protected, you may not be able write
files into it. Can you create any other data objects?
E.g., can you successfully execute the following?
qaz <- 1:10
print(qaz)
and
Q.A.Z. <- log(qaz)
print(Q.A.Z)
Bill Dunlap
Spotfire, TIBCO Software
wdunlap tibco.com
> -Original Message-
> From: [hidden email]
> [mailto:[hidden ema
Re: [R] Can't read/write to _nonfi
], meanx1, stdx)
#cat ("X ith = ", x[i])
#cat ("ZScore for x = ", ZScoreofX)
### transform the z score to Pnorm which will be used to compare with the
left of the cut off point
areaconfidenceinterval = pnormz(zscoreofx)
# Applied of cut off point on X
##
#cat ("Area of confident interval ", AreaConfidenceInterval)
result <- isarealeftofcutpoint(areaconfidenceinterval,cutoffpoint)
Getting result of new element in vector of x ,
# and new a new element in vector of y after applying
cut off point on x axis ###
#cat ("Result is ", result)
if (result == 1)
{
if (firstTime == 1)
{
index <- 1
firstTime <- 0
}
tempx <- x[i]
newx[index] <- tempx
tempy <- y[i]
newy[index] <- tempy
# cat("X = ", tempX, " ; Y = ", tempY, "\n\n")
# cat("Index = ", index, " ,NewX = ", NewX[index],", NewY = ",
NewY[index], "\n\n\n")
index <- index + 1
newxindex <- index
}
cat ("\n\n Element = " , i, " ; value = ", x[i], " ; Zscore value = ",
zscoreofx, "; Pnorm value = ", areaconfidenceinterval, " ; Included = ",
result, "\n")
}
newxx <- rep (0, newxindex -1)
newyy <- rep (0, newxindex - 1)
for (mycnt in 1: newxindex - 1)
{
newxx [mycnt] <- newx [mycnt]
newyy [mycnt] <- newy [mycnt]
}
vectornewxy <- data.frame (newxx,newyy,newxindex - 1)
cutoffsize [minh] <- newxindex -1
cat ("\n\n")
print (vectornewxy)
# check the sample correlation between x and y,and scatter plot
##print(paste("correlation", cor(NewY, NewX)))
correlationsampleaftercutoff <-
findcorrelationofsamplesizetaftercut(newxx,newyy,length(newxx))
cat("\n\ncorrelation of sample after cut off point is ",
correlationsampleaftercutoff)
sink ()
#hist(newxx)
#hist(newyy)
#plot(newxx, newyy)
dev.off()
fishercor <- fishercorrelation (correlationsampleaftercutoff)
sink (file= "comp.dat",append=T)
cat ("\n\n*** Step 3 : Fisher correlation applied to sample correlation of the
cut off point = ", " on x axis \n\n")
cat ("\n\n Fisher correlation", fishercor,"\n")
fisherval [minh] <- fishercor
sink ()
sink (file= "comp.dat",append=T)
cat ("\n\n*** END OF LOOP = ", minh, "
\n\n")
cat ("\n\n*** END OF LOOP = ", minh, "
\n\n")
sink ()
}
## End of Minh Splus code
#
3) Yes, i own the C:/DOCUMENTS AND SETTINGS/UMKTDM.EUH/WORKSPACE/DUNG/.Data/
directory and any file underneath it.
4) After running your program , i got the following output
> qaz <- 1:10
> print(qaz)
[1] 1 2 3 4 5 6 7 8 9 10
> Q.A.Z. <- log(qaz)
> print(Q.A.Z)
Problem: Object "Q.A.Z" not found
Error during wrapup: Can't create file for assigning "last.dump" ("C:/DOCUMENTS
AND SETTINGS/UMKTDM.EUH/WORKSPACE/DUNG/.Data/___60c0")
Hope i give you enough information. Please let me know if you need me to do
anything.
Thank you again,
Minh Tran
From: William Dunlap [via R] [ml-node+2331833-526419113-138...@n4.nabble.com]
Sent: Thursday, August 19, 2010 1:33 PM
To: Dung Tran
Subject: Re: Can't read/write to _nonfi
Min,
For S+-specific questions the S-news mailing list
would be better.
[hidden email]
Unlike R, S+ stores its data objects in files, one file
per object. The ___nonfi (___nonfiles) file contains
a mapping for object names to file names, for those
objects whose names cannot be unambiguously used as
file names.
The copies of the error messages look garbled to me.
They are definitely missing some characters and I don't
see the "Can't access to ..." message in the S+ source
code, but perhaps I'm not looking in the right version
> Can' access to file _nonfi
> Can't create file for assigning "last.dump"
> ("C:/WORKSPACE/DUNG/.Data/___bd40"
What version of S+ are you using and what are the precise
error messages?
Do you own the C:/WORKSPACE/DUNG directory or is
it someone else's? If it is someone else's and it
is sufficiently protected, you may not be able write
files into it. Can you create any other data objects?
E.g., can
Re: [R] Can't read/write to _nonfi
Min,
For S+-specific questions the S-news mailing list
would be better.
s-n...@wubios.wustl.edu
Unlike R, S+ stores its data objects in files, one file
per object. The ___nonfi (___nonfiles) file contains
a mapping for object names to file names, for those
objects whose names cannot be unambiguously used as
file names.
The copies of the error messages look garbled to me.
They are definitely missing some characters and I don't
see the "Can't access to ..." message in the S+ source
code, but perhaps I'm not looking in the right version
> Can' access to file _nonfi
> Can't create file for assigning "last.dump"
> ("C:/WORKSPACE/DUNG/.Data/___bd40"
What version of S+ are you using and what are the precise
error messages?
Do you own the C:/WORKSPACE/DUNG directory or is
it someone else's? If it is someone else's and it
is sufficiently protected, you may not be able write
files into it. Can you create any other data objects?
E.g., can you successfully execute the following?
qaz <- 1:10
print(qaz)
and
Q.A.Z. <- log(qaz)
print(Q.A.Z)
Bill Dunlap
Spotfire, TIBCO Software
wdunlap tibco.com
> -Original Message-
> From: r-help-boun...@r-project.org
> [mailto:r-help-boun...@r-project.org] On Behalf Of minh
> Sent: Thursday, August 19, 2010 11:48 AM
> To: r-help@r-project.org
> Subject: [R] Can't read/write to _nonfi
>
>
> Good afternoon,
>Hope you all have a wonderful day. I am glad to be here.
> Hope you could
> help me with the following errors that i have been trying to
> figure it all
> out since last week.
>
> I am using Splus from Insightful, and as i read, R and
> Splus are very
> similar. So hope you could help me.
>
>
> I have been continously received these error messages after
> i ran my small
> program for couple of times.
>
>
>
> Can' access to file _nonfi
> Can't create file for assigning "last.dump"
> ("C:/WORKSPACE/DUNG/.Data/___bd40"
>
>
>
> It is frustrating since the program is so small , and as i
> look into my
> project, the _nonfi is there under the data folder. So i
> don't know what the
> compiler is complained about. Since i am new to Splus
> language, I have no
> clue what i need to do.
>
> for (i in 1: 1)
>
> {
>
> x <- rnorm (1000);
>
> y <- rnorm (1000)
>
> newx <- x
>
> newy <- y
>
> hist (newx)
>
> hist (newy)
>
>
> }
>
>
>
>
>
>
>
> If you happen to know what i need to do, please help me.
>
> Thank you so much,
> Min
> --
> View this message in context:
> http://r.789695.n4.nabble.com/Can-t-read-write-to-nonfi-tp2331
707p2331707.html
> Sent from the R help mailing list archive at Nabble.com.
>
> __
> R-help@r-project.org mailing list
> https://stat.ethz.ch/mailman/listinfo/r-help
> PLEASE do read the posting guide
> http://www.R-project.org/posting-guide.html
> and provide commented, minimal, self-contained, reproducible code.
>
__
R-help@r-project.org mailing list
https://stat.ethz.ch/mailman/listinfo/r-help
PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
and provide commented, minimal, self-contained, reproducible code.
Re: [R] Can't read/write to _nonfi
I don't think I understand what the problem is... The code that you
provided works just fine without the for loop statement. as for the
can't access... The example that you provided doesn't address this.
Unless I am totally misunderstanding. R is an interpreted language
not compiled. Please, as to the instructions appended to the end of
each email, provide a minimal self-contained reproducible example.
Stephen
On Thu, Aug 19, 2010 at 1:48 PM, minh wrote:
>
> Good afternoon,
> Hope you all have a wonderful day. I am glad to be here. Hope you could
> help me with the following errors that i have been trying to figure it all
> out since last week.
>
> I am using Splus from Insightful, and as i read, R and Splus are very
> similar. So hope you could help me.
>
>
> I have been continously received these error messages after i ran my small
> program for couple of times.
>
>
>
> Can' access to file _nonfi
> Can't create file for assigning "last.dump"
> ("C:/WORKSPACE/DUNG/.Data/___bd40"
>
>
>
> It is frustrating since the program is so small , and as i look into my
> project, the _nonfi is there under the data folder. So i don't know what the
> compiler is complained about. Since i am new to Splus language, I have no
> clue what i need to do.
>
> for (i in 1: 1)
>
> {
>
> x <- rnorm (1000);
>
> y <- rnorm (1000)
>
> newx <- x
>
> newy <- y
>
> hist (newx)
>
> hist (newy)
>
>
> }
>
>
>
>
>
>
>
> If you happen to know what i need to do, please help me.
>
> Thank you so much,
> Min
> --
> View this message in context:
> http://r.789695.n4.nabble.com/Can-t-read-write-to-nonfi-tp2331707p2331707.html
> Sent from the R help mailing list archive at Nabble.com.
>
> __
> R-help@r-project.org mailing list
> https://stat.ethz.ch/mailman/listinfo/r-help
> PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
> and provide commented, minimal, self-contained, reproducible code.
>
--
Stephen Sefick
| Auburn University |
| Department of Biological Sciences |
| 331 Funchess Hall |
| Auburn, Alabama |
| 36849 |
|___|
| sas0...@auburn.edu |
| http://www.auburn.edu/~sas0025 |
|___|
Let's not spend our time and resources thinking about things that are
so little or so large that all they really do for us is puff us up and
make us feel like gods. We are mammals, and have not exhausted the
annoying little problems of being mammals.
-K. Mullis
__
R-help@r-project.org mailing list
https://stat.ethz.ch/mailman/listinfo/r-help
PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
and provide commented, minimal, self-contained, reproducible code.
[R] Can't read/write to _nonfi
Good afternoon,
Hope you all have a wonderful day. I am glad to be here. Hope you could
help me with the following errors that i have been trying to figure it all
out since last week.
I am using Splus from Insightful, and as i read, R and Splus are very
similar. So hope you could help me.
I have been continously received these error messages after i ran my small
program for couple of times.
Can' access to file _nonfi
Can't create file for assigning "last.dump"
("C:/WORKSPACE/DUNG/.Data/___bd40"
It is frustrating since the program is so small , and as i look into my
project, the _nonfi is there under the data folder. So i don't know what the
compiler is complained about. Since i am new to Splus language, I have no
clue what i need to do.
for (i in 1: 1)
{
x <- rnorm (1000);
y <- rnorm (1000)
newx <- x
newy <- y
hist (newx)
hist (newy)
}
If you happen to know what i need to do, please help me.
Thank you so much,
Min
--
View this message in context:
http://r.789695.n4.nabble.com/Can-t-read-write-to-nonfi-tp2331707p2331707.html
Sent from the R help mailing list archive at Nabble.com.
__
R-help@r-project.org mailing list
https://stat.ethz.ch/mailman/listinfo/r-help
PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
and provide commented, minimal, self-contained, reproducible code.
