Re: [R] Checking a (new) package - examples require other package functions
After adding the right functions to the NAMESPACE file, I am now getting a different error: Error: package/namespace load failed for 'REEMtree' Call sequence: 2: stop(gettextf(package/namespace load failed for '%s', libraryPkgName(package)), call. = FALSE, domain = NA) 1: library(package, lib.loc = lib.loc, character.only = TRUE, verbose = FALSE) Execution halted I have attached the NAMESPACE file in case that is where the problem is. Thanks again for your help! Rebecca - Original Message - From: Duncan Murdoch murd...@stats.uwo.ca To: Rebecca Sela rs...@stern.nyu.edu Cc: r-help r-help@r-project.org Sent: Thursday, May 14, 2009 6:57:21 AM GMT -05:00 US/Canada Eastern Subject: Re: [R] Checking a (new) package - examples require other package functions On 13/05/2009 2:38 PM, Rebecca Sela wrote: I am creating an R package. I ran R CMD check on the package, and everything passed until it tried to run the examples. Then, the result was: * checking examples ... ERROR Running examples in REEMtree-Ex.R failed. The error most likely occurred in: ### * AutoCorrelationLRtest flush(stderr()); flush(stdout()) ### Name: AutoCorrelationLRtest ### Title: Test for autocorrelation in the residuals of a RE-EM tree ### Aliases: AutoCorrelationLRtest ### Keywords: htest tree models ### ** Examples # Estimation without autocorrelation simpleEMresult-RandomEffectsTree(Y~D+t+X, data=simpleREEMdata, random=~1|ID, simpleREEMdata$ID) Error: couldn't find function RandomEffectsTree Execution halted The function RandomEffectsTree is defined in the R code for the package. How can I refer to other functions from the package in examples? (I have the Writing R-extensions PDF, so it would be enough to point me to the right page, if the answer is in there and I just missed it.) You should not need to do anything special to make package functions visible, as long as they would be visible to a normal user. (Functions not exported in the NAMESPACE file won't be visible in the examples.) Are you sure you have a function with that exact name? It could be a typo somewhere, e.g. RandomEffectTree or RandomeffectsTree. Duncan Murdoch __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
Re: [R] Checking a (new) package - examples require other package functions
On 13/05/2009 2:38 PM, Rebecca Sela wrote: I am creating an R package. I ran R CMD check on the package, and everything passed until it tried to run the examples. Then, the result was: * checking examples ... ERROR Running examples in REEMtree-Ex.R failed. The error most likely occurred in: ### * AutoCorrelationLRtest flush(stderr()); flush(stdout()) ### Name: AutoCorrelationLRtest ### Title: Test for autocorrelation in the residuals of a RE-EM tree ### Aliases: AutoCorrelationLRtest ### Keywords: htest tree models ### ** Examples # Estimation without autocorrelation simpleEMresult-RandomEffectsTree(Y~D+t+X, data=simpleREEMdata, random=~1|ID, simpleREEMdata$ID) Error: couldn't find function RandomEffectsTree Execution halted The function RandomEffectsTree is defined in the R code for the package. How can I refer to other functions from the package in examples? (I have the Writing R-extensions PDF, so it would be enough to point me to the right page, if the answer is in there and I just missed it.) You should not need to do anything special to make package functions visible, as long as they would be visible to a normal user. (Functions not exported in the NAMESPACE file won't be visible in the examples.) Are you sure you have a function with that exact name? It could be a typo somewhere, e.g. RandomEffectTree or RandomeffectsTree. Duncan Murdoch __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
Re: [R] Checking a (new) package - examples require other package functions
Another way of making functions visible to examples is to list the package name as Depends in the package DESCRIPTION file. Alternatively, if you precede use in \examples with library(packageName), you should also list it as Suggests in DESCRIPTION. Hope this helps. Spencer Duncan Murdoch wrote: On 13/05/2009 2:38 PM, Rebecca Sela wrote: I am creating an R package. I ran R CMD check on the package, and everything passed until it tried to run the examples. Then, the result was: * checking examples ... ERROR Running examples in REEMtree-Ex.R failed. The error most likely occurred in: ### * AutoCorrelationLRtest flush(stderr()); flush(stdout()) ### Name: AutoCorrelationLRtest ### Title: Test for autocorrelation in the residuals of a RE-EM tree ### Aliases: AutoCorrelationLRtest ### Keywords: htest tree models ### ** Examples # Estimation without autocorrelation simpleEMresult-RandomEffectsTree(Y~D+t+X, data=simpleREEMdata, random=~1|ID, simpleREEMdata$ID) Error: couldn't find function RandomEffectsTree Execution halted The function RandomEffectsTree is defined in the R code for the package. How can I refer to other functions from the package in examples? (I have the Writing R-extensions PDF, so it would be enough to point me to the right page, if the answer is in there and I just missed it.) You should not need to do anything special to make package functions visible, as long as they would be visible to a normal user. (Functions not exported in the NAMESPACE file won't be visible in the examples.) Are you sure you have a function with that exact name? It could be a typo somewhere, e.g. RandomEffectTree or RandomeffectsTree. Duncan Murdoch __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code. __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
[R] Checking a (new) package - examples require other package functions
I am creating an R package. I ran R CMD check on the package, and everything passed until it tried to run the examples. Then, the result was: * checking examples ... ERROR Running examples in REEMtree-Ex.R failed. The error most likely occurred in: ### * AutoCorrelationLRtest flush(stderr()); flush(stdout()) ### Name: AutoCorrelationLRtest ### Title: Test for autocorrelation in the residuals of a RE-EM tree ### Aliases: AutoCorrelationLRtest ### Keywords: htest tree models ### ** Examples # Estimation without autocorrelation simpleEMresult-RandomEffectsTree(Y~D+t+X, data=simpleREEMdata, random=~1|ID, simpleREEMdata$ID) Error: couldn't find function RandomEffectsTree Execution halted The function RandomEffectsTree is defined in the R code for the package. How can I refer to other functions from the package in examples? (I have the Writing R-extensions PDF, so it would be enough to point me to the right page, if the answer is in there and I just missed it.) Thanks! Rebecca __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
Re: [R] Checking a (new) package - examples require other package functions
Did you try putting library(your-package-name, char=TRUE) at the start of the examples? -- Tony Plate Rebecca Sela wrote: I am creating an R package. I ran R CMD check on the package, and everything passed until it tried to run the examples. Then, the result was: * checking examples ... ERROR Running examples in REEMtree-Ex.R failed. The error most likely occurred in: ### * AutoCorrelationLRtest flush(stderr()); flush(stdout()) ### Name: AutoCorrelationLRtest ### Title: Test for autocorrelation in the residuals of a RE-EM tree ### Aliases: AutoCorrelationLRtest ### Keywords: htest tree models ### ** Examples # Estimation without autocorrelation simpleEMresult-RandomEffectsTree(Y~D+t+X, data=simpleREEMdata, random=~1|ID, simpleREEMdata$ID) Error: couldn't find function RandomEffectsTree Execution halted The function RandomEffectsTree is defined in the R code for the package. How can I refer to other functions from the package in examples? (I have the Writing R-extensions PDF, so it would be enough to point me to the right page, if the answer is in there and I just missed it.) Thanks! Rebecca __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code. __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
