Re: [R] How many R packages are not free?

2010-10-04 Thread Paul Miller
Thanks to everyone who replied to my post. One person indicated that this 
question treads on dangerous terrain. I had that sense too but really wanted 
to know how many packages might not be free in the sense that they could be 
used at no cost by everyone. I was a little disappointed to learn that there 
are packages that are free for some people but not for others. But I understand 
that it's not me who has put time and effort into developing the base software 
or the various add-on packages. And so clearly it's up to others who have put 
in the time and effort to make those decisions.
 
Paul


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Re: [R] How many R packages are not free?

2010-10-03 Thread Prof Brian Ripley

On Sat, 2 Oct 2010, Peter Dalgaard wrote:


On 10/02/2010 07:38 PM, Spencer Graves wrote:

Is there anything on CRAN that is NOT free?  I assumed that CRAN
had a policy of not accepting anything that could not be freely
distributed, but I could not find any such statement in a quick search.
The code by Uwe identified 52 packages with file LICENCE or file
LICENSE, plus others with combinations of something like GPL with file
LICENCE or file LICENSE.



I believe the CRAN policy is just that: Freely redistributable. Free
Software usually means something else: Free usage and modification.


I am sure that is the intention, but a few packages have changed their 
licence terms since they were accepted.  'mclust' and 'optmatch' are 
two, and they are not currently 'freely redistributable'.



One main issue is code licensed free for non-commercial usage or
academic usage, which are not Free Software. However, CRAN being a
repository with many academic users, it does serve a purpose to
distribute them for research purposes.  [Long discussion omitted of
whether that sort of license was ever a good idea]


I've not seen in this thread mention of the Licencse/FOSS filter and 
option 'checkPackageLicense' - see the help on available.packages() 
and options() respectively.  These do enable people to work within the 
subset of packages 'known to be Free or Open Source'.





--
Peter Dalgaard
Center for Statistics, Copenhagen Business School
Phone: (+45)38153501
Email: pd@cbs.dk  Priv: pda...@gmail.com

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--
Brian D. Ripley,  rip...@stats.ox.ac.uk
Professor of Applied Statistics,  http://www.stats.ox.ac.uk/~ripley/
University of Oxford, Tel:  +44 1865 272861 (self)
1 South Parks Road, +44 1865 272866 (PA)
Oxford OX1 3TG, UKFax:  +44 1865 272595

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Re: [R] How many R packages are not free?

2010-10-02 Thread Uwe Ligges



On 01.10.2010 23:58, Paul Miller wrote:

Hello Everyone,

Just finished reading A Handbook of Statistical Analyses using R by Everitt and 
Hothorn. I'll begin by saying that I quite liked the book. It's both little and 
mighty in the sense that it's very compact but contains a tremendous amount of 
useful material.

The last chapter of the book deals with cluster analysis.  There's a package 
used in this chapter (I believe that it's called mclust) that charges an annual 
fee to non-academics. I did a little digging and found out that the annual cost 
for some one like me would be $100 but it would cost more for people in large 
companies. This isn't exactly outrageous but got me to wondering how many other 
packages might not be free. I searched online but didn't find much.

Does anyone have any information about this?


Are you talking about CRAN packages?
If so, looking into the license information of the repository shows 
which have standard licenses such as GPL and which licenses are special. 
Just take a look, e.g. starting with


download.file(http://cran.R-project.org/web/packages/packages.rds;, 
packages.rds, mode=wb)

x - .readRDS(packages.rds)
x - x[!duplicated(x[,1]),]
table(x[,License])


Best,
Uwe Ligges





Thanks,

Paul


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Re: [R] How many R packages are not free?

2010-10-02 Thread Liviu Andronic
On Sat, Oct 2, 2010 at 12:58 AM, Paul Miller pjmiller...@yahoo.com wrote:
 Does anyone have any information about this?

Looking at cran2deb [1] you can get an idea of the CRAN packages that
may qualify for Debian's restrictive notion of 'free'.

Regards
Liviu

[1] http://debian.cran.r-project.org/latest_packages.html

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Re: [R] How many R packages are not free?

2010-10-02 Thread Spencer Graves
   Is there anything on CRAN that is NOT free?  I assumed that CRAN 
had a policy of not accepting anything that could not be freely 
distributed, but I could not find any such statement in a quick search.  
The code by Uwe identified 52 packages with file LICENCE or file 
LICENSE, plus others with combinations of something like GPL with file 
LICENCE or file LICENSE.



  Thanks,
  Spencer


On 10/2/2010 9:42 AM, Uwe Ligges wrote:



On 01.10.2010 23:58, Paul Miller wrote:

Hello Everyone,

Just finished reading A Handbook of Statistical Analyses using R by 
Everitt and Hothorn. I'll begin by saying that I quite liked the 
book. It's both little and mighty in the sense that it's very compact 
but contains a tremendous amount of useful material.


The last chapter of the book deals with cluster analysis.  There's a 
package used in this chapter (I believe that it's called mclust) that 
charges an annual fee to non-academics. I did a little digging and 
found out that the annual cost for some one like me would be $100 but 
it would cost more for people in large companies. This isn't exactly 
outrageous but got me to wondering how many other packages might not 
be free. I searched online but didn't find much.


Does anyone have any information about this?


Are you talking about CRAN packages?
If so, looking into the license information of the repository shows 
which have standard licenses such as GPL and which licenses are 
special. Just take a look, e.g. starting with


download.file(http://cran.R-project.org/web/packages/packages.rds;, 
packages.rds, mode=wb)

x - .readRDS(packages.rds)
x - x[!duplicated(x[,1]),]
table(x[,License])


Best,
Uwe Ligges





Thanks,

Paul


[[alternative HTML version deleted]]




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http://www.R-project.org/posting-guide.html

and provide commented, minimal, self-contained, reproducible code.




--
Spencer Graves, PE, PhD
President and Chief Operating Officer
Structure Inspection and Monitoring, Inc.
751 Emerson Ct.
San José, CA 95126
ph:  408-655-4567

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Re: [R] How many R packages are not free?

2010-10-02 Thread Uwe Ligges



On 02.10.2010 19:38, Spencer Graves wrote:

  Is there anything on CRAN that is NOT free?


Oh dear, dangerous terrain 

Yes, there are some non-free packages on CRAN according to the 
terminology used by the Free Software Foundation. One example was 
already given in the original question: mclust. Just read its license 
file.


Best wishes,
Uwe





I assumed that CRAN had a
policy of not accepting anything that could not be freely distributed,
but I could not find any such statement in a quick search. The code by
Uwe identified 52 packages with file LICENCE or file LICENSE, plus
others with combinations of something like GPL with file LICENCE or
file LICENSE.


Thanks,
Spencer


On 10/2/2010 9:42 AM, Uwe Ligges wrote:



On 01.10.2010 23:58, Paul Miller wrote:

Hello Everyone,

Just finished reading A Handbook of Statistical Analyses using R by
Everitt and Hothorn. I'll begin by saying that I quite liked the
book. It's both little and mighty in the sense that it's very compact
but contains a tremendous amount of useful material.

The last chapter of the book deals with cluster analysis. There's a
package used in this chapter (I believe that it's called mclust) that
charges an annual fee to non-academics. I did a little digging and
found out that the annual cost for some one like me would be $100 but
it would cost more for people in large companies. This isn't exactly
outrageous but got me to wondering how many other packages might not
be free. I searched online but didn't find much.

Does anyone have any information about this?


Are you talking about CRAN packages?
If so, looking into the license information of the repository shows
which have standard licenses such as GPL and which licenses are
special. Just take a look, e.g. starting with

download.file(http://cran.R-project.org/web/packages/packages.rds;,
packages.rds, mode=wb)
x - .readRDS(packages.rds)
x - x[!duplicated(x[,1]),]
table(x[,License])


Best,
Uwe Ligges





Thanks,

Paul


[[alternative HTML version deleted]]




__
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http://www.R-project.org/posting-guide.html
and provide commented, minimal, self-contained, reproducible code.






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Re: [R] How many R packages are not free?

2010-10-02 Thread Dirk Eddelbuettel
On Sat, Oct 02, 2010 at 10:38:22AM -0700, Spencer Graves wrote:
Is there anything on CRAN that is NOT free?  

Lots. 

Also notice that 'free' means more than redistribution.  

 I assumed that CRAN had a policy of not accepting anything that could not be 
 freely  

That's the trouble with assumptions.

 distributed, but I could not find any such statement in a quick search.   
 The code by Uwe identified 52 packages with file LICENCE or file  
 LICENSE, plus others with combinations of something like GPL with file  
 LICENCE or file LICENSE.

Take 

   http://debian.cran.r-project.org/banned_packages.html

as a first start. It;s out of date as cran2deb is being rebuilt but
there are all sorts of nastinesses.  Some UW packages (mclust et al)
have non-free licenses that are academic-only (and hence discriminate
on use making them non-free). KU Leuven in Belgium and CSIRO in
Australia prohibit commercial use ...  Lots of bad examples.  

But given a universe of 2500+ packages, not entirely surprising that some 
differ.

(The web page comingles unsuitable licenses with other reasons for not
building packages such as dependency of external libraries or BioC.)

Dirk



   Thanks,
   Spencer


 On 10/2/2010 9:42 AM, Uwe Ligges wrote:


 On 01.10.2010 23:58, Paul Miller wrote:
 Hello Everyone,

 Just finished reading A Handbook of Statistical Analyses using R by  
 Everitt and Hothorn. I'll begin by saying that I quite liked the  
 book. It's both little and mighty in the sense that it's very compact 
 but contains a tremendous amount of useful material.

 The last chapter of the book deals with cluster analysis.  There's a  
 package used in this chapter (I believe that it's called mclust) that 
 charges an annual fee to non-academics. I did a little digging and  
 found out that the annual cost for some one like me would be $100 but 
 it would cost more for people in large companies. This isn't exactly  
 outrageous but got me to wondering how many other packages might not  
 be free. I searched online but didn't find much.

 Does anyone have any information about this?

 Are you talking about CRAN packages?
 If so, looking into the license information of the repository shows  
 which have standard licenses such as GPL and which licenses are  
 special. Just take a look, e.g. starting with

 download.file(http://cran.R-project.org/web/packages/packages.rds;,  
 packages.rds, mode=wb)
 x - .readRDS(packages.rds)
 x - x[!duplicated(x[,1]),]
 table(x[,License])


 Best,
 Uwe Ligges




 Thanks,

 Paul


 [[alternative HTML version deleted]]




 __
 R-help@r-project.org mailing list
 https://stat.ethz.ch/mailman/listinfo/r-help
 PLEASE do read the posting guide  
 http://www.R-project.org/posting-guide.html
 and provide commented, minimal, self-contained, reproducible code.


 -- 
 Spencer Graves, PE, PhD
 President and Chief Operating Officer
 Structure Inspection and Monitoring, Inc.
 751 Emerson Ct.
 San José, CA 95126
 ph:  408-655-4567

 __
 R-help@r-project.org mailing list
 https://stat.ethz.ch/mailman/listinfo/r-help
 PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
 and provide commented, minimal, self-contained, reproducible code.

-- 
Three out of two people have difficulties with fractions.

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Re: [R] How many R packages are not free?

2010-10-02 Thread Spencer Graves

 Thanks.  Spencer

On 10/2/2010 10:51 AM, Dirk Eddelbuettel wrote:

On Sat, Oct 02, 2010 at 10:38:22AM -0700, Spencer Graves wrote:

Is there anything on CRAN that is NOT free?

Lots.

Also notice that 'free' means more than redistribution.


I assumed that CRAN had a policy of not accepting anything that could not be 
freely

That's the trouble with assumptions.


distributed, but I could not find any such statement in a quick search.
The code by Uwe identified 52 packages with file LICENCE or file
LICENSE, plus others with combinations of something like GPL with file
LICENCE or file LICENSE.

Take

http://debian.cran.r-project.org/banned_packages.html

as a first start. It;s out of date as cran2deb is being rebuilt but
there are all sorts of nastinesses.  Some UW packages (mclust et al)
have non-free licenses that are academic-only (and hence discriminate
on use making them non-free). KU Leuven in Belgium and CSIRO in
Australia prohibit commercial use ...  Lots of bad examples.

But given a universe of 2500+ packages, not entirely surprising that some 
differ.

(The web page comingles unsuitable licenses with other reasons for not
building packages such as dependency of external libraries or BioC.)

Dirk



   Thanks,
   Spencer


On 10/2/2010 9:42 AM, Uwe Ligges wrote:


On 01.10.2010 23:58, Paul Miller wrote:

Hello Everyone,

Just finished reading A Handbook of Statistical Analyses using R by
Everitt and Hothorn. I'll begin by saying that I quite liked the
book. It's both little and mighty in the sense that it's very compact
but contains a tremendous amount of useful material.

The last chapter of the book deals with cluster analysis.  There's a
package used in this chapter (I believe that it's called mclust) that
charges an annual fee to non-academics. I did a little digging and
found out that the annual cost for some one like me would be $100 but
it would cost more for people in large companies. This isn't exactly
outrageous but got me to wondering how many other packages might not
be free. I searched online but didn't find much.

Does anyone have any information about this?

Are you talking about CRAN packages?
If so, looking into the license information of the repository shows
which have standard licenses such as GPL and which licenses are
special. Just take a look, e.g. starting with

download.file(http://cran.R-project.org/web/packages/packages.rds;,
packages.rds, mode=wb)
x- .readRDS(packages.rds)
x- x[!duplicated(x[,1]),]
table(x[,License])


Best,
Uwe Ligges




Thanks,

Paul


 [[alternative HTML version deleted]]




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Re: [R] How many R packages are not free?

2010-10-02 Thread Peter Dalgaard
On 10/02/2010 07:38 PM, Spencer Graves wrote:
 Is there anything on CRAN that is NOT free?  I assumed that CRAN 
 had a policy of not accepting anything that could not be freely 
 distributed, but I could not find any such statement in a quick search.  
 The code by Uwe identified 52 packages with file LICENCE or file 
 LICENSE, plus others with combinations of something like GPL with file 
 LICENCE or file LICENSE.


I believe the CRAN policy is just that: Freely redistributable. Free
Software usually means something else: Free usage and modification.

One main issue is code licensed free for non-commercial usage or
academic usage, which are not Free Software. However, CRAN being a
repository with many academic users, it does serve a purpose to
distribute them for research purposes.  [Long discussion omitted of
whether that sort of license was ever a good idea]


-- 
Peter Dalgaard
Center for Statistics, Copenhagen Business School
Phone: (+45)38153501
Email: pd@cbs.dk  Priv: pda...@gmail.com

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[R] How many R packages are not free?

2010-10-01 Thread Paul Miller
Hello Everyone,
 
Just finished reading A Handbook of Statistical Analyses using R by Everitt and 
Hothorn. I'll begin by saying that I quite liked the book. It's both little and 
mighty in the sense that it's very compact but contains a tremendous amount of 
useful material.
 
The last chapter of the book deals with cluster analysis.  There's a package 
used in this chapter (I believe that it's called mclust) that charges an annual 
fee to non-academics. I did a little digging and found out that the annual cost 
for some one like me would be $100 but it would cost more for people in large 
companies. This isn't exactly outrageous but got me to wondering how many other 
packages might not be free. I searched online but didn't find much. 
 
Does anyone have any information about this?
 
Thanks,
 
Paul


[[alternative HTML version deleted]]

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Re: [R] How many R packages are not free?

2010-10-01 Thread Ajay Ohri
http://depts.washington.edu/uwc4c/express-licenses/files/view/license/35/

http://depts.washington.edu/uwc4c/express-licenses/files/view/license/35/Only
Revolution charges (but they have atleast 5 packages by now) apart from
enhanced core libraries.

Rattle has a commercial version as well _it is a R GUI
Rattle can be purchased on DVD as a standalone installation for $500USD
($560AUD),  http://rattle.togaware.com/sales.html

http://inferenceforr.com/purchase/default.aspx sells for 199$



Websites-
http://decisionstats.com
http://dudeofdata.com


Linkedin- www.linkedin.com/in/ajayohri




On Sat, Oct 2, 2010 at 3:28 AM, Paul Miller pjmiller...@yahoo.com wrote:

 Hello Everyone,

 Just finished reading A Handbook of Statistical Analyses using R by Everitt
 and Hothorn. I'll begin by saying that I quite liked the book. It's both
 little and mighty in the sense that it's very compact but contains a
 tremendous amount of useful material.

 The last chapter of the book deals with cluster analysis.  There's a
 package used in this chapter (I believe that it's called mclust) that
 charges an annual fee to non-academics. I did a little digging and found out
 that the annual cost for some one like me would be $100 but it would cost
 more for people in large companies. This isn't exactly outrageous but got me
 to wondering how many other packages might not be free. I searched online
 but didn't find much.

 Does anyone have any information about this?

 Thanks,

 Paul


[[alternative HTML version deleted]]


 __
 R-help@r-project.org mailing list
 https://stat.ethz.ch/mailman/listinfo/r-help
 PLEASE do read the posting guide
 http://www.R-project.org/posting-guide.html
 and provide commented, minimal, self-contained, reproducible code.



[[alternative HTML version deleted]]

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