Re: [R] Problem with xtabs(), exclude=NULL, and counting NA's
Webb Sprague webb.sprague at gmail.com writes: xtabs(~wkhp, x, exclude=NULL, na.action=na.pass) wkhp 20 30 40 45 60 NA 1 1 10 1 3 4 now this doesn't even work table(wtf, exclude=NULL) wtf [0,10) [10,20) [20,30) [30,40) [40,50) [50,60) [60,70) [70,80) 8562 15297 9666 6659 3583 667 1357 238 [80,90) [90,100) [100,110) [110,120) [120,130) [130,140) [140,150) [150,160) 61 311571995 7 3 111 [180,190) NA 161 62161 Compare: xtabs (~ wtf, exclude=NULL, na.action=na.pass) wtf [0,10) [10,20) [20,30) [30,40) [40,50) [50,60) [60,70) [70,80) 8562 15297 9666 6659 3583 667 1357 238 [80,90) [90,100) [100,110) [110,120) [120,130) [130,140) [140,150) [150,160) 61 311571995 7 3 111 [180,190) 161 version _ platform x86_64-unknown-linux-gnu arch x86_64 os linux-gnu system x86_64, linux-gnu status major 2 minor 9.2 year 2009 month 08 day24 svn rev49384 language R version.string R version 2.9.2 (2009-08-24) __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
Re: [R] Problem with xtabs(), exclude=NULL, and counting NA's
On Sep 23, 2009, at 5:11 PM, ws wrote: Webb Sprague webb.sprague at gmail.com writes: xtabs(~wkhp, x, exclude=NULL, na.action=na.pass) wkhp 20 30 40 45 60 NA 11 10134 now this doesn't even work Try: wtf - factor(x, levels(c(levels(wtf), NA), exclude=NULL) xtabs (~ wtf, exclude=NULL, na.action=na.pass) -- David table(wtf, exclude=NULL) wtf [0,10) [10,20) [20,30) [30,40) [40,50) [50,60) [60,70) [70,80) 8562 15297 9666 6659 3583 667 1357 238 [80,90) [90,100) [100,110) [110,120) [120,130) [130,140) [140,150) [150,160) 61 311571995 7 3 111 [180,190) NA 161 62161 Compare: xtabs (~ wtf, exclude=NULL, na.action=na.pass) wtf [0,10) [10,20) [20,30) [30,40) [40,50) [50,60) [60,70) [70,80) 8562 15297 9666 6659 3583 667 1357 238 [80,90) [90,100) [100,110) [110,120) [120,130) [130,140) [140,150) [150,160) 61 311571995 7 3 111 [180,190) 161 version _ platform x86_64-unknown-linux-gnu arch x86_64 os linux-gnu system x86_64, linux-gnu status major 2 minor 9.2 year 2009 month 08 day24 svn rev49384 language R version.string R version 2.9.2 (2009-08-24) __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code. David Winsemius, MD Heritage Laboratories West Hartford, CT __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
Re: [R] Problem with xtabs(), exclude=NULL, and counting NA's
On Sep 24, 2009, at 3:06 AM, David Winsemius wrote: On Sep 23, 2009, at 5:11 PM, ws wrote: Webb Sprague webb.sprague at gmail.com writes: xtabs(~wkhp, x, exclude=NULL, na.action=na.pass) wkhp 20 30 40 45 60 NA 11 10134 now this doesn't even work Try: wtf - factor(x, levels(c(levels(wtf), NA), exclude=NULL) xtabs (~ wtf, exclude=NULL, na.action=na.pass) Note: that will mean that sum(is.na(wtf)) will return 0 and is.na(wtf)- will no longer have any valid targets. -- David table(wtf, exclude=NULL) wtf [0,10) [10,20) [20,30) [30,40) [40,50) [50,60) [60,70) [70,80) 8562 15297 9666 6659 3583 667 1357 238 [80,90) [90,100) [100,110) [110,120) [120,130) [130,140) [140,150) [150,160) 61 311571995 7 3 111 [180,190) NA 161 62161 Compare: xtabs (~ wtf, exclude=NULL, na.action=na.pass) wtf [0,10) [10,20) [20,30) [30,40) [40,50) [50,60) [60,70) [70,80) 8562 15297 9666 6659 3583 667 1357 238 [80,90) [90,100) [100,110) [110,120) [120,130) [130,140) [140,150) [150,160) 61 311571995 7 3 111 [180,190) 161 -- David Winsemius, MD Heritage Laboratories West Hartford, CT __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
Re: [R] Problem with xtabs(), exclude=NULL, and counting NA's
wtf - factor(x, levels(c(levels(wtf), NA), exclude=NULL) xtabs (~ wtf, exclude=NULL, na.action=na.pass) Also see addNA. Hadley -- http://had.co.nz/ __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
Re: [R] Problem with xtabs(), exclude=NULL, and counting NA's
On Sep 24, 2009, at 10:06 AM, hadley wickham wrote: wtf - factor(x, levels(c(levels(wtf), NA), exclude=NULL) xtabs (~ wtf, exclude=NULL, na.action=na.pass) Also see addNA. That is nice. The addNA function does not exactly jump off the page for the (too) casual reader. In the context of the OP's original problem, these lines of code are illustrative: xtabs(~addNA(wkhp), x, exclude=NULL, na.action=na.pass) addNA(wkhp) 20 30 40 45 60 NA 11 10134 x$wtf - cut(x$wkhp, breaks=seq(20, 80, by=20) ) xtabs( ~ addNA(wkhp), x) addNA(wkhp) 20 30 40 45 60 NA 11 10134 xtabs( ~ addNA(wtf), x) addNA(wtf) (20,40] (40,60] (60,80]NA 11 4 0 5 Hadley -- http://had.co.nz/ David Winsemius, MD Heritage Laboratories West Hartford, CT __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
Re: [R] Problem with xtabs(), exclude=NULL, and counting NA's
Also see addNA. Works great. Sometimes R drives me crazy, but Hadley, you make it much easier for me That is nice. The addNA function does not exactly jump off the page for the (too) casual reader. In the context of the OP's original problem, these lines of code are illustrative: Here is an example from the actual dataset: xtabs(pwgtp~addNA(cut(pums.mex$JWMNP, c(0, 19, 65, Inf), include.lowest=TRUE))) addNA(cut(pums.mex$JWMNP, c(0, 19, 65, Inf), include.lowest = TRUE)) [0,19] (19,65] (65,Inf] NA 3905346787 252161914 xtabs(pwgtp~(cut(pums.mex$JWMNP, c(0, 19, 65, Inf), include.lowest=TRUE))) cut(pums.mex$JWMNP, c(0, 19, 65, Inf), include.lowest = TRUE) [0,19] (19,65] (65,Inf] 3905346787 2521 Thanks to all! __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
Re: [R] Problem with xtabs(), exclude=NULL, and counting NA's
Webb Sprague webb.sprague at gmail.com writes: xtabs(~wkhp, x, exclude=NULL, na.action=na.pass) wkhp 20 30 40 45 60 NA 1 1 10 1 3 4 (Forgive me for the repost, but I just joined the R list, so maybe this will go through.) Now the above doesn't work! See : table(JWMNP.cut, exclude=NULL) JWMNP.cut [0,10) [10,20) [20,30) [30,40) [40,50) [50,60) [60,70) [70,80) 8345 14708 9314 6317 3437 649 1287 232 [80,90) [90,100) [100,110) [110,120) [120,130) [130,140) [140,150) [150,160) 58 296571989 6 3 108 [160,170) [170,180) [180,190) [190,200) [200,Inf] NA 0 0 154 0 0 60888 xtabs(~JWMNP.cut, exclude=NULL, na.action=na.pass) JWMNP.cut [0,10) [10,20) [20,30) [30,40) [40,50) [50,60) [60,70) [70,80) 8345 14708 9314 6317 3437 649 1287 232 [80,90) [90,100) [100,110) [110,120) [120,130) [130,140) [140,150) [150,160) 58 296571989 6 3 108 [160,170) [170,180) [180,190) [190,200) [200,Inf] 0 0 154 0 0 version _ platform x86_64-unknown-linux-gnu arch x86_64 os linux-gnu system x86_64, linux-gnu status major 2 minor 9.2 year 2009 month 08 day24 svn rev49384 language R version.string R version 2.9.2 (2009-08-24) __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
Re: [R] Problem with xtabs(), exclude=NULL, and counting NA's
Note that the variable below has been generated with cut(), if that matters. On Wed, Sep 23, 2009 at 2:34 PM, ws webb.spra...@gmail.com wrote: Webb Sprague webb.sprague at gmail.com writes: xtabs(~wkhp, x, exclude=NULL, na.action=na.pass) wkhp 20 30 40 45 60 NA 1 1 10 1 3 4 (Forgive me for the repost, but I just joined the R list, so maybe this will go through.) Now the above doesn't work! See : table(JWMNP.cut, exclude=NULL) JWMNP.cut [0,10) [10,20) [20,30) [30,40) [40,50) [50,60) [60,70) [70,80) 8345 14708 9314 6317 3437 649 1287 232 [80,90) [90,100) [100,110) [110,120) [120,130) [130,140) [140,150) [150,160) 58 296 57 19 89 6 3 108 [160,170) [170,180) [180,190) [190,200) [200,Inf] NA 0 0 154 0 0 60888 xtabs(~JWMNP.cut, exclude=NULL, na.action=na.pass) JWMNP.cut [0,10) [10,20) [20,30) [30,40) [40,50) [50,60) [60,70) [70,80) 8345 14708 9314 6317 3437 649 1287 232 [80,90) [90,100) [100,110) [110,120) [120,130) [130,140) [140,150) [150,160) 58 296 57 19 89 6 3 108 [160,170) [170,180) [180,190) [190,200) [200,Inf] 0 0 154 0 0 version _ platform x86_64-unknown-linux-gnu arch x86_64 os linux-gnu system x86_64, linux-gnu status major 2 minor 9.2 year 2009 month 08 day 24 svn rev 49384 language R version.string R version 2.9.2 (2009-08-24) __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code. __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
Re: [R] Problem with xtabs(), exclude=NULL, and counting NA's
xtabs(~wkhp, x, exclude=NULL, na.action=na.pass) wkhp 20 30 40 45 60 NA 1 1 10 1 3 4 Thanks! I must say that this is slightly odd behavior to require both na.action= AND exclude=. Does anyone know of a justification? Shouldn't it be changed? vent Ah well, if R were internally consistent or corresponded to typical programming Unix practices, it just wouldn't feel the same ... /vent Cheers! -- David Winsemius, MD Heritage Laboratories West Hartford, CT __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
Re: [R] Problem with xtabs(), exclude=NULL, and counting NA's
I must say that this is slightly odd behavior to require both na.action= AND exclude=. Does anyone know of a justification? Not strange at all. ?options na.action, sub head Options set in package stats. You need to override the default setting. ws-7 wrote: xtabs(~wkhp, x, exclude=NULL, na.action=na.pass) wkhp 20 30 40 45 60 NA 1 1 10 1 3 4 Thanks! I must say that this is slightly odd behavior to require both na.action= AND exclude=. Does anyone know of a justification? Shouldn't it be changed? vent Ah well, if R were internally consistent or corresponded to typical programming Unix practices, it just wouldn't feel the same ... /vent Cheers! -- David Winsemius, MD Heritage Laboratories West Hartford, CT __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code. -- View this message in context: http://www.nabble.com/Problem-with-xtabs%28%29%2C-exclude%3DNULL%2C-and-counting-NA%27s-tp25304142p25305878.html Sent from the R help mailing list archive at Nabble.com. __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
[R] Problem with xtabs(), exclude=NULL, and counting NA's
Hi all, I cannot get xtabs to count NA's like I expect. Below is a sample session, and note that the last two calls to xtabs() yield exactly the same thing. I am running R-2.5.0 -- if there was a bug in xtabs that got fixed, I would love to know about it. If there is a bug tracker somewhere, I can file it too. It isn't my fault that the server is so ridiculously outdated, but I would have to install a more recent version in my home directory to fix this, so I don't really want to. Note also that I know various approaches to working around the problem, so I don't need help with that, just with whether or not xtabs works with nas or not. TIA $ x=as.data.frame(list(wkhp=WKHP[1:20])) $ x wkhp 1NA 2NA 360 4NA 520 640 730 840 940 10 40 11 45 12 40 13 40 14 NA 15 40 16 40 17 40 18 60 19 60 20 40 $ xtabs(~wkhp, x) wkhp 20 30 40 45 60 1 1 10 1 3 $ xtabs(~wkhp, x, exclude=NULL) # Look -- no counts of NAs! wkhp 20 30 40 45 60 1 1 10 1 3 __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
Re: [R] Problem with xtabs(), exclude=NULL, and counting NA's
On Sep 4, 2009, at 7:49 PM, ws wrote: Hi all, I cannot get xtabs to count NA's like I expect. Below is a sample session, and note that the last two calls to xtabs() yield exactly the same thing. I am running R-2.5.0 -- if there was a bug in xtabs that got fixed, I would love to know about it. If there is a bug tracker somewhere, I can file it too. It isn't my fault that the server is so ridiculously outdated, but I would have to install a more recent version in my home directory to fix this, so I don't really want to. Note also that I know various approaches to working around the problem, so I don't need help with that, just with whether or not xtabs works with nas or not. TIA $ x=as.data.frame(list(wkhp=WKHP[1:20])) $ x wkhp 1NA 2NA 360 4NA 520 640 730 840 940 10 40 11 45 12 40 13 40 14 NA 15 40 16 40 17 40 18 60 19 60 20 40 $ xtabs(~wkhp, x) wkhp 20 30 40 45 60 1 1 10 1 3 $ xtabs(~wkhp, x, exclude=NULL) # Look -- no counts of NAs! wkhp 20 30 40 45 60 1 1 10 1 3 xtabs(~wkhp, x, exclude=NULL, na.action=na.pass) wkhp 20 30 40 45 60 NA 11 10134 -- David Winsemius, MD Heritage Laboratories West Hartford, CT __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
