Re: [R] ncdf installation in R
Sashi Challa wrote: I am trying to install ncdf package on a Linux 64-bit machine. I successfully installed netcdf using this command, ./configure --prefix=/home/challar/netcdf/ --disable-netcdf4 Hi Sashi, Just had a similar issue today. I would suggest the --disable-netcdf4 hasn't been picked up. Try installing an earlier version and using that path instead. See: http://levlafayette.com/node/148 Hope this helps! Lev -- View this message in context: http://r.789695.n4.nabble.com/ncdf-installation-in-R-tp2969252p2999678.html Sent from the R help mailing list archive at Nabble.com. __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
Re: [R] ncdf installation in R
Sashi Challa wrote: I am trying to install ncdf package on a Linux 64-bit machine. [...] Hi Sashi, Just had a similar issue today. I would suggest the --disable-netcdf4 hasn't been picked up. Try installing an earlier version and using that path instead. See: http://levlafayette.com/node/148 Hope this helps! Hello, Please note that the ncdf package is designed for netcdf library version 3, and the newer ncdf4 package is designed for netcdf library version 4. If you want to install ncdf with version 4 of the netcdf library, you can find instructions at the ncdf/ncdf4 package homepage: http://cirrus.ucsd.edu/~pierce/ncdf/ or just follow the package URL link from CRAN. Regards, --Dave --- David W. Pierce Division of Climate, Atmospheric Science, and Physical Oceanography Scripps Institution of Oceanography (858) 534-8276 (voice) / (858) 534-8561 (fax)dpie...@ucsd.edu __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
[R] ncdf installation in R
Hi All, I am trying to install ncdf package on a Linux 64-bit machine. I successfully installed netcdf using this command, ./configure --prefix=/home/challar/netcdf/ --disable-netcdf4 I then tried to install ncdf package in R R CMD INSTALL --configure-args=-with-netcdf_incdir=/home/challar/netcdf/include -with-netcdf_libdir=/home/challar/netcdf/lib ncdf_1.6.3.tar.gz I get this output below * installing to library â/home/challar/R/R-2.11.1/libraryâ * installing *source* package âncdfâ ... checking for gcc... gcc -std=gnu99 checking for C compiler default output file name... a.out checking whether the C compiler works... yes checking whether we are cross compiling... no checking for suffix of executables... checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc -std=gnu99 accepts -g... yes checking for gcc -std=gnu99 option to accept ANSI C... none needed checking how to run the C preprocessor... gcc -std=gnu99 -E checking for egrep... grep -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking /home/challar/netcdf/include/netcdf.h usability... yes checking /home/challar/netcdf/include/netcdf.h presence... yes checking for /home/challar/netcdf/include/netcdf.h... yes Using user-specified netCDF include dir=/home/challar/netcdf/include Found netcdf.h in: /home/challar/netcdf/include checking for /home/challar/netcdf/lib/libnetcdf.a... yes Using user-specified netCDF library dir=/home/challar/netcdf/lib Found netcdf library file libnetcdf.a in directory /home/challar/netcdf/lib configure: creating ./config.status config.status: creating src/Makevars ** libs gcc -std=gnu99 -I/home/challar/R/R-2.11.1/include -I/home/challar/netcdf/include -I/usr/local/include-fpic -g -O2 -c ncdf.c -o ncdf.o gcc -std=gnu99 -I/home/challar/R/R-2.11.1/include -I/home/challar/netcdf/include -I/usr/local/include-fpic -g -O2 -c ncdf2.c -o ncdf2.o gcc -std=gnu99 -I/home/challar/R/R-2.11.1/include -I/home/challar/netcdf/include -I/usr/local/include-fpic -g -O2 -c ncdf3.c -o ncdf3.o gcc -std=gnu99 -shared -L/usr/local/lib64 -o ncdf.so ncdf.o ncdf2.o ncdf3.o -L/home/challar/netcdf/lib -lnetcdf installing to /home/challar/R/R-2.11.1/library/ncdf/libs ** R ** preparing package for lazy loading ** help *** installing help indices ** building package indices ... ** testing if installed package can be loaded Error in dyn.load(file, DLLpath = DLLpath, ...) : unable to load shared library '/home/challar/R/R-2.11.1/library/ncdf/libs/ncdf.so': /home/challar/R/R-2.11.1/library/ncdf/libs/ncdf.so: undefined symbol: curl_easy_getinfo ERROR: loading failed * removing â/home/challar/R/R-2.11.1/library/ncdfâ Thinking that there is something wrong with curllib I installed curl in a local directory and configured netCDF using â --with-curl=/home/challar/curl/â option. Even that did not work. Got the same error. I looked up in the R-mailing list archive and found a thread herehttp://www.mail-archive.com/r-help@r-project.org/msg53269.html that said about disabling SELinux. Is that only way out?? Here is R.version output: platform x86_64-unknown-linux-gnu arch x86_64 os linux-gnu system x86_64, linux-gnu status major 2 minor 11.1 year 2010 month 05 day31 svn rev52157 language R version.string R version 2.11.1 (2010-05-31) Your help is appreciated. Thanks Sashi [[alternative HTML version deleted]] __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
