Re: [R] odfWeave produces output file that OO can't open

2009-12-14 Thread Max Kuhn
Can you:

  - run any of the examples in the package's examples directory
  - provide the results of sessionInfo()
  - tell us what version of OO
  - read the posting guide?

Max

On Sun, Dec 13, 2009 at 2:17 PM, Michael Kubovy kub...@virginia.edu wrote:
 Dear R-helpers,

 I'm trying to learn how to use odfSweave.

 Here is my source file (in /Users/mk/myTeach/2010-1-7720/odfWeave):
 
 Analysis of the iris Data

 Created on \Sexpr{date()}

 loadLibs, echo = FALSE, results = hide=
 # I usually load the libraries first so that any output produced by loading 
 the library does not end up in the document
 library(MASS)
 library(lattice)
 library(grid)
 data(iris)
 @

 This famous (Fisher's or Anderson's) iris data set gives the measurements in 
 centimeters of the variables sepal length and width and petal length and 
 width, respectively, for \Sexpr{dim(iris)[1]/3} flowers from each of 
 \Sexpr{length(levels(iris$Species))} species of iris. The species are 
 \Sexpr{paste(levels(iris$Species), collapse = , )}.

 Here is a bulleted list of the species:
 showOutputList, echo = FALSE, results = xml=
 odfItemize(levels(iris$Species))
 @
 

 With
 
 R version 2.10.0 (2009-10-26)
 x86_64-apple-darwin9.8.0
 locale:
 [1] C/C/en_US/C/C/C
 attached base packages:
 [1] grid      stats     graphics  grDevices datasets  utils     methods
 [8] base
 other attached packages:
 [1] MASS_7.3-4      odfWeave_0.7.10 XML_2.6-0       lattice_0.17-26
 [5] JGR_1.7-0       iplots_1.1-3    JavaGD_0.5-2    rJava_0.8-1
 loaded via a namespace (and not attached):
 [1] Matrix_0.999375-32 lme4_0.999375-32   tools_2.10.0
 
 I run:
 
 odfWeave('simple1.odt','simpleOut.odt')
  Copying  simple1.odt
  Setting wd to  
 /var/folders/TG/TG6nWu2pHYCI-BdWWiyMxU+++TI/-Tmp-//RtmplOpSLO/odfWeave13103539684
  Unzipping ODF file using unzip -o simple1.odt

  Removing  simple1.odt
  Creating a Pictures directory

  Pre-processing the contents
  Sweaving  content.Rnw

  Writing to file content_1.xml
  Processing code chunks ...
    1 : term hide(label=loadLibs)
    2 : term xml(label=showOutputList)

  'content_1.xml' has been Sweaved

  Removing content.xml

  Post-processing the contents
  Removing content.Rnw
  Removing styles.xml
  Renaming styles_2.xml to styles.xml
  Removing extra files

  Packaging file using zip -r simple1.odt .
  Copying  simple1.odt
  Resetting wd
  Removing  
 /var/folders/TG/TG6nWu2pHYCI-BdWWiyMxU+++TI/-Tmp-//RtmplOpSLO/odfWeave13103539684

  Done
 Warning message:
 closing unused connection 3 (content.xml)
 

 When I try to open simpleOut.odt I get: Format error discovered in the file 
 in sub-document content.xml at 22,124(row,col). The file content.xml is 
 empty.




 __
 Professor Michael Kubovy
 University of Virginia
 Department of Psychology
 for mail add:
 P.O.Box 400400
 Charlottesville, VA 22904-4400
 USA
 for FedEx or UPS add:
 Gilmer Hall, Room 102
 McCormick Road
 Charlottesville, VA 22903
 USA
                room    phone
 Office:    B011 +1-434-982-4729
 Lab:        B019        +1-434-982-4751
 Fax:                            +1-434-982-4766
 WWW:    http://www.people.virginia.edu/~mk9y/

 __
 R-help@r-project.org mailing list
 https://stat.ethz.ch/mailman/listinfo/r-help
 PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
 and provide commented, minimal, self-contained, reproducible code.




-- 

Max

__
R-help@r-project.org mailing list
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PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
and provide commented, minimal, self-contained, reproducible code.


[R] odfWeave produces output file that OO can't open

2009-12-13 Thread Michael Kubovy
Dear R-helpers,

I'm trying to learn how to use odfSweave.

Here is my source file (in /Users/mk/myTeach/2010-1-7720/odfWeave):

Analysis of the iris Data

Created on \Sexpr{date()}

loadLibs, echo = FALSE, results = hide=
# I usually load the libraries first so that any output produced by loading the 
library does not end up in the document
library(MASS)
library(lattice)
library(grid)
data(iris)
@

This famous (Fisher's or Anderson's) iris data set gives the measurements in 
centimeters of the variables sepal length and width and petal length and width, 
respectively, for \Sexpr{dim(iris)[1]/3} flowers from each of 
\Sexpr{length(levels(iris$Species))} species of iris. The species are 
\Sexpr{paste(levels(iris$Species), collapse = , )}.

Here is a bulleted list of the species:
showOutputList, echo = FALSE, results = xml=
odfItemize(levels(iris$Species))
@


With

R version 2.10.0 (2009-10-26) 
x86_64-apple-darwin9.8.0 
locale:
[1] C/C/en_US/C/C/C
attached base packages:
[1] grid  stats graphics  grDevices datasets  utils methods  
[8] base 
other attached packages:
[1] MASS_7.3-4  odfWeave_0.7.10 XML_2.6-0   lattice_0.17-26
[5] JGR_1.7-0   iplots_1.1-3JavaGD_0.5-2rJava_0.8-1
loaded via a namespace (and not attached):
[1] Matrix_0.999375-32 lme4_0.999375-32   tools_2.10.0  

I run:

 odfWeave('simple1.odt','simpleOut.odt')
  Copying  simple1.odt 
  Setting wd to  
/var/folders/TG/TG6nWu2pHYCI-BdWWiyMxU+++TI/-Tmp-//RtmplOpSLO/odfWeave13103539684
 
  Unzipping ODF file using unzip -o simple1.odt 

  Removing  simple1.odt 
  Creating a Pictures directory

  Pre-processing the contents
  Sweaving  content.Rnw 

  Writing to file content_1.xml
  Processing code chunks ...
1 : term hide(label=loadLibs)
2 : term xml(label=showOutputList)

  'content_1.xml' has been Sweaved

  Removing content.xml

  Post-processing the contents
  Removing content.Rnw 
  Removing styles.xml
  Renaming styles_2.xml to styles.xml
  Removing extra files

  Packaging file using zip -r simple1.odt . 
  Copying  simple1.odt 
  Resetting wd
  Removing  
/var/folders/TG/TG6nWu2pHYCI-BdWWiyMxU+++TI/-Tmp-//RtmplOpSLO/odfWeave13103539684
 

  Done
Warning message:
closing unused connection 3 (content.xml) 


When I try to open simpleOut.odt I get: Format error discovered in the file in 
sub-document content.xml at 22,124(row,col). The file content.xml is empty.




__
Professor Michael Kubovy
University of Virginia
Department of Psychology
for mail add:
P.O.Box 400400
Charlottesville, VA 22904-4400
USA
for FedEx or UPS add: 
Gilmer Hall, Room 102
McCormick Road
Charlottesville, VA 22903
USA
roomphone
Office:B011 +1-434-982-4729
Lab:B019+1-434-982-4751
Fax:+1-434-982-4766
WWW:http://www.people.virginia.edu/~mk9y/

__
R-help@r-project.org mailing list
https://stat.ethz.ch/mailman/listinfo/r-help
PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
and provide commented, minimal, self-contained, reproducible code.