Re: [R] opacity under dispersion command under plotrix
On 10/30/2009 10:02 PM, Joe King wrote: Is there anyway to make the lines in the dispersion command come forward in a plot and allow the fill in the dispersion parameter be transparent so all of the lines I am using to note confidence intervals are shown? Hi Joe, I have probably missed something, as a call to dispersion with type=l will just display lines with no fill. I'm not sure exactly what you mean by come forward, I'm guessing this means displayed last, so just make the call to dispersion the last one for that plot. Jim __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
[R] opacity under dispersion command under plotrix
Is there anyway to make the lines in the dispersion command come forward in a plot and allow the fill in the dispersion parameter be transparent so all of the lines I am using to note confidence intervals are shown? --- Joe King, M.A. Ph.D. Student University of Washington - Seattle 206-913-2912 j...@joepking.com --- Never throughout history has a man who lived a life of ease left a name worth remembering. --Theodore Roosevelt [[alternative HTML version deleted]] __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
Re: [R] opacity under dispersion command under plotrix
On Oct 30, 2009, at 7:02 AM, Joe King wrote: Is there anyway to make the lines in the dispersion command come forward in a plot and allow the fill in the dispersion parameter be transparent so all of the lines I am using to note confidence intervals are shown? Got code? --- Joe King, M.A. Ph.D. Student -- David Winsemius, MD Heritage Laboratories West Hartford, CT __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
Re: [R] opacity under dispersion command under plotrix
Heres my code: era1 - seq(1.5,5,.25) plot(era1,yhyp1$pe, xlab=ERA, ylab=Probability of Winning Cy Young,type=l, col=black, lwd=2) dispersion(era1,yhyp1$pe,y1upper,y1lower,type=l, fill=blue,arrow.cap=0.01,intervals=FALSE)#Requres plotrix dispersion(era1,yhyp2$pe,y2upper,y2lower,type=l, fill=lightcyan,arrow.cap=0.01,intervals=FALSE)#Requres plotrix dispersion(era1,yhyp3$pe,y3upper,y3lower,type=l, fill=gray97,arrow.cap=0.01,intervals=FALSE)#Requres plotrix lines(era1,yhyp1$pe,col=black, lwd=5) lines(era1,yhyp2$pe,col=blue, lwd=5) lines(era1,yhyp3$pe,col=red, lwd=5) my raw data is too much to add as I have coefficients from a model run and a lot of code before that but the matricies for the above variables I am trying to plot are yhyp1$pe [1] 0.91938328 0.88005171 0.82235810 0.74124787 0.63520716 0.51090516 [7] 0.38417025 0.27254070 0.18569395 0.12375682 0.08183003 0.05420338 [13] 0.03619331 0.02446051 0.01677548 yhyp1$upper [,1] up 0.98470376 up 0.96729674 up 0.93342185 up 0.87016432 up 0.77356024 up 0.63337489 up 0.49704477 up 0.39523107 up 0.32380653 up 0.26340188 up 0.21370693 up 0.17113476 up 0.13810301 up 0.9516 up 0.08930777 yhyp1$lower [,1] low 0.758338075 low 0.704684752 low 0.636448570 low 0.569633622 low 0.485986148 low 0.390656111 low 0.276924551 low 0.169273771 low 0.092501362 low 0.048176412 low 0.023014862 low 0.010788438 low 0.005082446 low 0.002250877 low 0.001063545 Please forgive my poor posting manners. Joe King 206-913-2912 j...@joepking.com Never throughout history has a man who lived a life of ease left a name worth remembering. --Theodore Roosevelt -Original Message- From: David Winsemius [mailto:dwinsem...@comcast.net] Sent: Friday, October 30, 2009 7:15 AM To: Joe King Cc: r-help@r-project.org Subject: Re: [R] opacity under dispersion command under plotrix On Oct 30, 2009, at 7:02 AM, Joe King wrote: Is there anyway to make the lines in the dispersion command come forward in a plot and allow the fill in the dispersion parameter be transparent so all of the lines I am using to note confidence intervals are shown? Got code? --- Joe King, M.A. Ph.D. Student -- David Winsemius, MD Heritage Laboratories West Hartford, CT __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
Re: [R] opacity under dispersion command under plotrix
On Oct 30, 2009, at 3:49 PM, Joe King wrote: Heres my code: era1 - seq(1.5,5,.25) plot(era1,yhyp1$pe, xlab=ERA, ylab=Probability of Winning Cy Young,type=l, col=black, lwd=2) This plots. library(plotrix) # should go here. dispersion(era1,yhyp1$pe,y1upper,y1lower,type=l, fill=blue,arrow.cap=0.01,intervals=FALSE)#Requres plotrix This throws an error even with plotrix loaded. dispersion(era1,yhyp2$pe,y2upper,y2lower,type=l, fill=lightcyan,arrow.cap=0.01,intervals=FALSE)#Requres plotrix dispersion(era1,yhyp3$pe,y3upper,y3lower,type=l, fill=gray97,arrow.cap=0.01,intervals=FALSE)#Requres plotrix Try using the rgb function to create transparent colors: rgb(1,0,0,0.3) [1] #FF4D lines(era1, yhyp1$pe, col=#FF4D, lwd=5) The above _does_ plot with transparent color, but the below will not without data. lines(era1,yhyp2$pe,col=blue, lwd=5) lines(era1,yhyp3$pe,col=red, lwd=5) After a bunch of cutting and pasting of the yhyp1 data. I still get errors because y1upper and y1lower are not defined (nor their values implied by what you have written.) Learn to use dput and review your code to see what variables are undefined. -- David my raw data is too much to add as I have coefficients from a model run and a lot of code before that but the matricies for the above variables I am trying to plot are yhyp1$pe [1] 0.91938328 0.88005171 0.82235810 0.74124787 0.63520716 0.51090516 [7] 0.38417025 0.27254070 0.18569395 0.12375682 0.08183003 0.05420338 [13] 0.03619331 0.02446051 0.01677548 yhyp1$upper [,1] up 0.98470376 up 0.96729674 up 0.93342185 up 0.87016432 up 0.77356024 up 0.63337489 up 0.49704477 up 0.39523107 up 0.32380653 up 0.26340188 up 0.21370693 up 0.17113476 up 0.13810301 up 0.9516 up 0.08930777 yhyp1$lower [,1] low 0.758338075 low 0.704684752 low 0.636448570 low 0.569633622 low 0.485986148 low 0.390656111 low 0.276924551 low 0.169273771 low 0.092501362 low 0.048176412 low 0.023014862 low 0.010788438 low 0.005082446 low 0.002250877 low 0.001063545 Please forgive my poor posting manners. Joe King 206-913-2912 j...@joepking.com Never throughout history has a man who lived a life of ease left a name worth remembering. --Theodore Roosevelt -Original Message- From: David Winsemius [mailto:dwinsem...@comcast.net] Sent: Friday, October 30, 2009 7:15 AM To: Joe King Cc: r-help@r-project.org Subject: Re: [R] opacity under dispersion command under plotrix On Oct 30, 2009, at 7:02 AM, Joe King wrote: Is there anyway to make the lines in the dispersion command come forward in a plot and allow the fill in the dispersion parameter be transparent so all of the lines I am using to note confidence intervals are shown? Got code? --- Joe King, M.A. Ph.D. Student -- David Winsemius, MD Heritage Laboratories West Hartford, CT __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code. David Winsemius, MD Heritage Laboratories West Hartford, CT __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
