Re: [R] similarity measure for binary data

[Javed Pathan]

Hi Karuna,
You can try vegdist() function in the vegan package. The function
computes dissimilarity indices that are useful for or popular with community
ecologists. All indices use quantitative data, although they would be named
by the corresponding binary index, but you can calculate the binary index
using an appropriate argument.
**
Thanks,
Javed Pathan
Chief Statistician
Manthan Software Services Ltd,Bangalore
India



On Fri, Oct 30, 2009 at 1:19 PM, Rodrigo Villegas wrote:

> The 'Gower' metric is one that is commonly used.
>
> Rod
>
> On Thu, Oct 29, 2009 at 10:22 AM, karuna m  wrote:
> > I am doing hierarchical clustering with cluster package.  I couldnot find
> similarity measures like matching coefficient, Jaccard coefficient and sokal
> and sneath. Could anyone please tell package with similarity measures for
> binary data?
> > kind regards,
> >
> > Ms.Karunambigai M
> > PhD Scholar
> > Dept. of Biostatistics
> > NIMHANS
> > Bangalore
> > India
> >
> >
> >  From cricket scores to your friends. Try the Yahoo! India Homepage!
> http://in.yahoo.com/trynew
> >[[alternative HTML version deleted]]
> >
> >
> > __
> > R-help@r-project.org mailing list
> > https://stat.ethz.ch/mailman/listinfo/r-help
> > PLEASE do read the posting guide
> http://www.R-project.org/posting-guide.html
> > and provide commented, minimal, self-contained, reproducible code.
> >
> >
>
> __
> R-help@r-project.org mailing list
> https://stat.ethz.ch/mailman/listinfo/r-help
> PLEASE do read the posting guide
> http://www.R-project.org/posting-guide.html
> and provide commented, minimal, self-contained, reproducible code.
>

[[alternative HTML version deleted]]

__
R-help@r-project.org mailing list
https://stat.ethz.ch/mailman/listinfo/r-help
PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
and provide commented, minimal, self-contained, reproducible code.

Re: [R] similarity measure for binary data

[Rodrigo Villegas]

The 'Gower' metric is one that is commonly used.

Rod

On Thu, Oct 29, 2009 at 10:22 AM, karuna m  wrote:
> I am doing hierarchical clustering with cluster package.  I couldnot find 
> similarity measures like matching coefficient, Jaccard coefficient and sokal 
> and sneath. Could anyone please tell package with similarity measures for 
> binary data?
> kind regards,
>
> Ms.Karunambigai M
> PhD Scholar
> Dept. of Biostatistics
> NIMHANS
> Bangalore
> India
>
>
>      From cricket scores to your friends. Try the Yahoo! India Homepage! 
> http://in.yahoo.com/trynew
>        [[alternative HTML version deleted]]
>
>
> __
> R-help@r-project.org mailing list
> https://stat.ethz.ch/mailman/listinfo/r-help
> PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
> and provide commented, minimal, self-contained, reproducible code.
>
>

__
R-help@r-project.org mailing list
https://stat.ethz.ch/mailman/listinfo/r-help
PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
and provide commented, minimal, self-contained, reproducible code.

Re: [R] similarity measure for binary data

[Rodrigo Villegas]

The 'Gower' metric is one that is commonly used.

R

On Thu, Oct 29, 2009 at 10:22 AM, karuna m  wrote:
> I am doing hierarchical clustering with cluster package.  I couldnot find 
> similarity measures like matching coefficient, Jaccard coefficient and sokal 
> and sneath. Could anyone please tell package with similarity measures for 
> binary data?
> kind regards,
>
> Ms.Karunambigai M
> PhD Scholar
> Dept. of Biostatistics
> NIMHANS
> Bangalore
> India
>
>
>      From cricket scores to your friends. Try the Yahoo! India Homepage! 
> http://in.yahoo.com/trynew
>        [[alternative HTML version deleted]]
>
>
> __
> R-help@r-project.org mailing list
> https://stat.ethz.ch/mailman/listinfo/r-help
> PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
> and provide commented, minimal, self-contained, reproducible code.
>
>

__
R-help@r-project.org mailing list
https://stat.ethz.ch/mailman/listinfo/r-help
PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
and provide commented, minimal, self-contained, reproducible code.

[R] similarity measure for binary data

[karuna m]

I am doing hierarchical clustering with cluster package.  I couldnot find 
similarity measures like matching coefficient, Jaccard coefficient and sokal 
and sneath. Could anyone please tell package with similarity measures for 
binary data?
kind regards,

Ms.Karunambigai M
PhD Scholar
Dept. of Biostatistics
NIMHANS
Bangalore
India


  From cricket scores to your friends. Try the Yahoo! India Homepage! 
http://in.yahoo.com/trynew
[[alternative HTML version deleted]]

__
R-help@r-project.org mailing list
https://stat.ethz.ch/mailman/listinfo/r-help
PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
and provide commented, minimal, self-contained, reproducible code.