[R] unable to load Hmisc in R 2.14.0

2011-11-10 Thread Jacob Wegelin


On my MacBook Pro (OS 10.6.8), after updating to R version 2.14.0 (2011-10-31) 
and reinstalling the Hmisc package, I am unable to load the Hmisc library.

Hmisc was working *before* I updated R.

Any idea what's wrong?

Details below.


install.packages(Hmisc, dependencies=TRUE)

trying URL
'http://cran.case.edu/bin/macosx/leopard/contrib/2.14/Hmisc_3.9-0.tgz'
Content type 'application/x-gzip' length 1457353 bytes (1.4 Mb)
opened URL
==
downloaded 1.4 Mb


The downloaded packages are in

/var/folders/HR/HRdt7XjbGC4gfgEM2M7yWE+++TM/-Tmp-//RtmpvPPB8R/downloaded_packages

library(Hmisc)

Error in dyn.load(file, DLLpath = DLLpath, ...) :
  unable to load shared object
'/Library/Frameworks/R.framework/Versions/2.14/Resources/library/Hmisc/libs/x86_64/Hmisc.so':
  
dlopen(/Library/Frameworks/R.framework/Versions/2.14/Resources/library/Hmisc/libs/x86_64/Hmisc.so,
6): Library not loaded:
@rpath/R.framework/Versions/2.14/Resources/lib/libR.dylib
  Referenced from:
/Library/Frameworks/R.framework/Versions/2.14/Resources/library/Hmisc/libs/x86_64/Hmisc.so
  Reason: image not found
Error: package/namespace load failed for ‘Hmisc’


sessionInfo()

R version 2.14.0 (2011-10-31)
Platform: x86_64-apple-darwin9.8.0/x86_64 (64-bit)

locale:
[1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8

attached base packages:
[1] splines   stats graphics  grDevices utils datasets  methods
base

other attached packages:
[1] survival_2.36-10

loaded via a namespace (and not attached):
[1] cluster_1.14.1 grid_2.14.0lattice_0.20-0 psych_1.1.11
tools_2.14.0 




Jacob A. Wegelin
Assistant Professor
Department of Biostatistics
Virginia Commonwealth University
830 E. Main St., Seventh Floor
P. O. Box 980032
Richmond VA 23298-0032__
R-help@r-project.org mailing list
https://stat.ethz.ch/mailman/listinfo/r-help
PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
and provide commented, minimal, self-contained, reproducible code.


Re: [R] unable to load Hmisc in R 2.14.0

2011-11-10 Thread Brian Diggs

On 11/10/2011 11:32 AM, Jacob Wegelin wrote:


On my MacBook Pro (OS 10.6.8), after updating to R version 2.14.0
(2011-10-31) and reinstalling the Hmisc package, I am unable to load the
Hmisc library.

Hmisc was working *before* I updated R.

Any idea what's wrong?


Likely the same problem as discussed in this thread:

https://stat.ethz.ch/pipermail/r-sig-mac/2011-November/008760.html


Details below.


install.packages(Hmisc, dependencies=TRUE)

trying URL
'http://cran.case.edu/bin/macosx/leopard/contrib/2.14/Hmisc_3.9-0.tgz'
Content type 'application/x-gzip' length 1457353 bytes (1.4 Mb)
opened URL
==
downloaded 1.4 Mb


The downloaded packages are in
/var/folders/HR/HRdt7XjbGC4gfgEM2M7yWE+++TM/-Tmp-//RtmpvPPB8R/downloaded_packages


library(Hmisc)

Error in dyn.load(file, DLLpath = DLLpath, ...) :
unable to load shared object
'/Library/Frameworks/R.framework/Versions/2.14/Resources/library/Hmisc/libs/x86_64/Hmisc.so':

dlopen(/Library/Frameworks/R.framework/Versions/2.14/Resources/library/Hmisc/libs/x86_64/Hmisc.so,

6): Library not loaded:
@rpath/R.framework/Versions/2.14/Resources/lib/libR.dylib
Referenced from:
/Library/Frameworks/R.framework/Versions/2.14/Resources/library/Hmisc/libs/x86_64/Hmisc.so

Reason: image not found
Error: package/namespace load failed for ‘Hmisc’


sessionInfo()

R version 2.14.0 (2011-10-31)
Platform: x86_64-apple-darwin9.8.0/x86_64 (64-bit)

locale:
[1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8

attached base packages:
[1] splines stats graphics grDevices utils datasets methods
base

other attached packages:
[1] survival_2.36-10

loaded via a namespace (and not attached):
[1] cluster_1.14.1 grid_2.14.0 lattice_0.20-0 psych_1.1.11
tools_2.14.0




Jacob A. Wegelin
Assistant Professor
Department of Biostatistics
Virginia Commonwealth University
830 E. Main St., Seventh Floor
P. O. Box 980032
Richmond VA 23298-0032





--
Brian S. Diggs, PhD
Senior Research Associate, Department of Surgery
Oregon Health  Science University

__
R-help@r-project.org mailing list
https://stat.ethz.ch/mailman/listinfo/r-help
PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
and provide commented, minimal, self-contained, reproducible code.