Re: [R] ROC curve in R
On 07/01/2010 01:33 PM, Changbin Du wrote: Read the ROCR package, it is very good. Just be sure you really need an ROC curve. More often than not it gets in the way of understanding. Frank On Thu, Jul 1, 2010 at 9:50 AM, ashu6886 wrote: Hi, i have a fairly large amount of genomic data. I have created a dataframe which has "Reference" as one column and "Variation" as another. I want to plot a ROC curve based on these 2 columns. I have serached the R manual but I could not understand. Can anybody help me with the R code for plotting ROC curve. Thnx ashu6886 -- View this message in context: http://r.789695.n4.nabble.com/ROC-curve-in-R-tp2275431p2275431.html Sent from the R help mailing list archive at Nabble.com. __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code. -- Frank E Harrell Jr Professor and ChairmanSchool of Medicine Department of Biostatistics Vanderbilt University __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
Re: [R] ROC curve in R
Read the ROCR package, it is very good. On Thu, Jul 1, 2010 at 9:50 AM, ashu6886 wrote: > > Hi, > > i have a fairly large amount of genomic data. I have created a dataframe > which has "Reference" as one column and "Variation" as another. I want to > plot a ROC curve based on these 2 columns. I have serached the R manual but > I could not understand. Can anybody help me with the R code for plotting > ROC > curve. > > Thnx > ashu6886 > -- > View this message in context: > http://r.789695.n4.nabble.com/ROC-curve-in-R-tp2275431p2275431.html > Sent from the R help mailing list archive at Nabble.com. > > __ > R-help@r-project.org mailing list > https://stat.ethz.ch/mailman/listinfo/r-help > PLEASE do read the posting guide > http://www.R-project.org/posting-guide.html > and provide commented, minimal, self-contained, reproducible code. > -- Sincerely, Changbin -- Changbin Du DOE Joint Genome Institute Bldg 400 Rm 457 2800 Mitchell Dr Walnut Creet, CA 94598 Phone: 925-927-2856 [[alternative HTML version deleted]] __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
Re: [R] ROC curve in R
Regarding search,
There is also the "sos" packege.
And yesterday someone wrote a nice R code to enable searching inside
the description of all packages:
http://www.r-bloggers.com/cran-search/
Cheers,
Tal
Contact
Details:---
Contact me: tal.gal...@gmail.com | 972-52-7275845
Read me: www.talgalili.com (Hebrew) | www.biostatistics.co.il (Hebrew) |
www.r-statistics.com (English)
--
On Thu, Jul 1, 2010 at 8:09 PM, Bert Gunter wrote:
> Did you try googling on "R ROC function" (or something similar) or using
> the
> RSiteSearch() function?
>
> ?RSiteSearch
>
> RSiteSearch("ROC",restr="func")
>
> Learn to use R's various search capabilities before posting, please!
>
> Bert Gunter
> Genentech Nonclinical Biostatistics
>
>
>
> -Original Message-
> From: r-help-boun...@r-project.org [mailto:r-help-boun...@r-project.org]
> On
> Behalf Of ashu6886
> Sent: Thursday, July 01, 2010 9:51 AM
> To: r-help@r-project.org
> Subject: [R] ROC curve in R
>
>
> Hi,
>
> i have a fairly large amount of genomic data. I have created a dataframe
> which has "Reference" as one column and "Variation" as another. I want to
> plot a ROC curve based on these 2 columns. I have serached the R manual but
> I could not understand. Can anybody help me with the R code for plotting
> ROC
> curve.
>
> Thnx
> ashu6886
> --
> View this message in context:
> http://r.789695.n4.nabble.com/ROC-curve-in-R-tp2275431p2275431.html
> Sent from the R help mailing list archive at Nabble.com.
>
> __
> R-help@r-project.org mailing list
> https://stat.ethz.ch/mailman/listinfo/r-help
> PLEASE do read the posting guide
> http://www.R-project.org/posting-guide.html
> and provide commented, minimal, self-contained, reproducible code.
>
> __
> R-help@r-project.org mailing list
> https://stat.ethz.ch/mailman/listinfo/r-help
> PLEASE do read the posting guide
> http://www.R-project.org/posting-guide.html
> and provide commented, minimal, self-contained, reproducible code.
>
[[alternative HTML version deleted]]
__
R-help@r-project.org mailing list
https://stat.ethz.ch/mailman/listinfo/r-help
PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
and provide commented, minimal, self-contained, reproducible code.
Re: [R] ROC curve in R
Try the ROCR package. http://rocr.bioinf.mpi-sb.mpg.de/ROCR.pdf Saeed On Thu, Jul 1, 2010 at 9:50 AM, ashu6886 wrote: > > Hi, > > i have a fairly large amount of genomic data. I have created a dataframe > which has "Reference" as one column and "Variation" as another. I want to > plot a ROC curve based on these 2 columns. I have serached the R manual but > I could not understand. Can anybody help me with the R code for plotting ROC > curve. > > Thnx > ashu6886 > -- > View this message in context: > http://r.789695.n4.nabble.com/ROC-curve-in-R-tp2275431p2275431.html > Sent from the R help mailing list archive at Nabble.com. > > __ > R-help@r-project.org mailing list > https://stat.ethz.ch/mailman/listinfo/r-help > PLEASE do read the posting guide http://www.R-project.org/posting-guide.html > and provide commented, minimal, self-contained, reproducible code. > __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
Re: [R] ROC curve in R
Did you try googling on "R ROC function" (or something similar) or using the
RSiteSearch() function?
?RSiteSearch
RSiteSearch("ROC",restr="func")
Learn to use R's various search capabilities before posting, please!
Bert Gunter
Genentech Nonclinical Biostatistics
-Original Message-
From: r-help-boun...@r-project.org [mailto:r-help-boun...@r-project.org] On
Behalf Of ashu6886
Sent: Thursday, July 01, 2010 9:51 AM
To: r-help@r-project.org
Subject: [R] ROC curve in R
Hi,
i have a fairly large amount of genomic data. I have created a dataframe
which has "Reference" as one column and "Variation" as another. I want to
plot a ROC curve based on these 2 columns. I have serached the R manual but
I could not understand. Can anybody help me with the R code for plotting ROC
curve.
Thnx
ashu6886
--
View this message in context:
http://r.789695.n4.nabble.com/ROC-curve-in-R-tp2275431p2275431.html
Sent from the R help mailing list archive at Nabble.com.
__
R-help@r-project.org mailing list
https://stat.ethz.ch/mailman/listinfo/r-help
PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
and provide commented, minimal, self-contained, reproducible code.
__
R-help@r-project.org mailing list
https://stat.ethz.ch/mailman/listinfo/r-help
PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
and provide commented, minimal, self-contained, reproducible code.
Re: [R] ROC curve in R
On Jul 1, 2010, at 12:50 PM, ashu6886 wrote: Hi, i have a fairly large amount of genomic data. I have created a dataframe which has "Reference" as one column and "Variation" as another. I want to plot a ROC curve based on these 2 columns. I have serached the R manual but I could not understand. Can anybody help me with the R code for plotting ROC curve. Not sure what sort of "R manual" you consulted, but surely any basic introduction must have covered how to search. In the interest of moving you a bit faster perhaps: ?RSiteSearch -- David Winsemius, MD West Hartford, CT __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
