Re: [R] table with values as dots in increasing sizes

2010-11-06 Thread Michael Friendly

This is a tableplot, available on R-Forge at
https://r-forge.r-project.org/projects/tableplot/

install.packages(tableplot, repos=http://R-Forge.R-project.org;)
will install, as long as you are using R 2.12.x; otherwise, you'll
have to download the source package and install from source.


-Michael


On 11/5/2010 4:45 AM, fugelpitch wrote:


I was just thinking of a way to present data and if it is possible in R.

I have a data frame that looks as follows (this is just mockup data).

df
location,species1,species2,species3,species4,species5
loc1,0.44,0.28,0.37,-0.24,0.41
loc2,0.54,0.62,0.34,0.52,0.71
loc3,-0.33,0.75,-0.34,0.48,0.61

location is a factor while all the species are numerical vectors.

I would like to present this as a table (or something that looks like a
table) but instead of the numbers I would like to present circles (pch = 19)
that increases in size with increasing number. Is it also possible to make
it change color if the value is negative. (E.g. larger blue circles
represent larger +values while larger red circles represent larger -values)?


Jonas


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Re: [R] table with values as dots in increasing sizes

2010-11-05 Thread ONKELINX, Thierry
 install.packages(fortunes)
 library(fortunes)
 fortune(yoda)

Evelyn Hall: I would like to know how (if) I can extract some of the
information from the summary of my nlme.
Simon Blomberg: This is R. There is no if. Only how.
   -- Evelyn Hall and Simon 'Yoda' Blomberg
  R-help (April 2005)

df - data.frame(matrix(rnorm(15), nrow = 3))
colnames(df) - paste(species, 1:5, sep = )
df$location - paste(loc, 1:3)
install.packages(ggplot2)
library(ggplot2)
molten - melt(df, id.vars = location, variable_name = species)
molten$sign - factor(sign(molten$value))
ggplot(molten, aes(x = species, y = location, colour = sign, size =
abs(value))) + geom_point()

ggplot(molten, aes(x = species, y = location, colour = sign, size =
abs(value))) + geom_point() + scale_colour_manual(values = c(red,
blue))

HTH,

Thierry




ir. Thierry Onkelinx
Instituut voor natuur- en bosonderzoek
team Biometrie  Kwaliteitszorg
Gaverstraat 4
9500 Geraardsbergen
Belgium

Research Institute for Nature and Forest
team Biometrics  Quality Assurance
Gaverstraat 4
9500 Geraardsbergen
Belgium

tel. + 32 54/436 185
thierry.onkel...@inbo.be
www.inbo.be

To call in the statistician after the experiment is done may be no more
than asking him to perform a post-mortem examination: he may be able to
say what the experiment died of.
~ Sir Ronald Aylmer Fisher

The plural of anecdote is not data.
~ Roger Brinner

The combination of some data and an aching desire for an answer does not
ensure that a reasonable answer can be extracted from a given body of
data.
~ John Tukey
  

 -Oorspronkelijk bericht-
 Van: r-help-boun...@r-project.org 
 [mailto:r-help-boun...@r-project.org] Namens fugelpitch
 Verzonden: vrijdag 5 november 2010 9:45
 Aan: r-help@r-project.org
 Onderwerp: [R] table with values as dots in increasing sizes
 
 
 I was just thinking of a way to present data and if it is 
 possible in R.
 
 I have a data frame that looks as follows (this is just mockup data).
 
 df
 location,species1,species2,species3,species4,species5
 loc1,0.44,0.28,0.37,-0.24,0.41
 loc2,0.54,0.62,0.34,0.52,0.71
 loc3,-0.33,0.75,-0.34,0.48,0.61
 
 location is a factor while all the species are numerical vectors.
 
 I would like to present this as a table (or something that 
 looks like a
 table) but instead of the numbers I would like to present 
 circles (pch = 19) that increases in size with increasing 
 number. Is it also possible to make it change color if the 
 value is negative. (E.g. larger blue circles represent larger 
 +values while larger red circles represent larger -values)?
 
 
 Jonas
 --
 View this message in context: 
 http://r.789695.n4.nabble.com/table-with-values-as-dots-in-inc
 reasing-sizes-tp3028297p3028297.html
 Sent from the R help mailing list archive at Nabble.com.
 
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 https://stat.ethz.ch/mailman/listinfo/r-help
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 http://www.R-project.org/posting-guide.html
 and provide commented, minimal, self-contained, reproducible code.
 

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Re: [R] table with values as dots in increasing sizes

2010-11-05 Thread Gabor Grothendieck
On Fri, Nov 5, 2010 at 4:45 AM, fugelpitch jo...@runtimerecords.net wrote:

 I was just thinking of a way to present data and if it is possible in R.

 I have a data frame that looks as follows (this is just mockup data).

 df
 location,species1,species2,species3,species4,species5
 loc1,0.44,0.28,0.37,-0.24,0.41
 loc2,0.54,0.62,0.34,0.52,0.71
 loc3,-0.33,0.75,-0.34,0.48,0.61

 location is a factor while all the species are numerical vectors.

 I would like to present this as a table (or something that looks like a
 table) but instead of the numbers I would like to present circles (pch = 19)
 that increases in size with increasing number. Is it also possible to make
 it change color if the value is negative. (E.g. larger blue circles
 represent larger +values while larger red circles represent larger -values)?


This was recently discussed on the list.  See the thread that begins here:
https://stat.ethz.ch/pipermail/r-help/2010-November/258453.html


-- 
Statistics  Software Consulting
GKX Group, GKX Associates Inc.
tel: 1-877-GKX-GROUP
email: ggrothendieck at gmail.com

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