[R] labels outliers in boxplot
Dear R-users, Following is part of my data, where slide has 36 levels and block 48 levels. I have done boxplot for each slide on the same graph. There are outliers for each slide and I tried to use indentify functtion to identify outliers in such a way that when I click on an outlier or point, the points will be labelled by either their block or ID or by both but without success. How can I make it work or are there other ways to do it than using identify function? Thanks in advance, Jenny, dat1[1:10,] y Slide Block ID Control 1 0.03147823 1 1 IgG-human 5 2 -0.23815974 1 1 LPPAANDVSVLTAAR 0 3 -0.71926359 1 1 HTKHYRVVSKPAALV 0 4 -0.14607826 1 1 FVALPAATADAYATT 0 5 0.89553073 1 1 NYPAMMAHAGDMAGY 0 6 -0.67587100 1 1 RRALRQIGVLERPVG 0 7 0.32636034 1 1 DCGTIRVGSFRGRWL 0 8 -1.44057259 1 1 MAKLSTDELLDAFKE 0 9 -0.37064338 1 1 LELSDFVKKFEETFE 0 10 -0.20387233 1 1 VSRRAKVDVLIVHTT 0 tb_ncs-subset(dat1,dat1$Control==1) ### this data contains only negative controls par(las=2,mar=c(10.1,4.1,4.1,2.1)) boxplot(split(tb_ncs$y,tb_ncs$Slide),col=orange, cex=.65, outline=TRUE,main=Negative control response of each patient, cex.main=1, font.main=1, col.main=blue, names=c(1:35,B)) grid(nx=NA, ny=NULL) ### grid over boxplot legend(bottomright, B = Buffer + sec,text.col=blue) out.block- identify(tb_ncs$y,tb_ncs$Slide) _ Flyger tiden iväg? Fånga dagen med Yahoo! Mails inbyggda __ R-help@stat.math.ethz.ch mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
Re: [R] labels outliers in boxplot
Dear talepande, Thanks for your suggestion, I have already tried to use it, but the identify function gave me only the observation number everytime I clicked on any point.What I want is instead of obervation numbers it would be block and/or slide numbers. Any other idea how I can make it works ? Thanks --- talepanda [EMAIL PROTECTED] skrev: because given data is a part of your data, I cannot examine, however, try: ##out.block-identify(tb_ncs$y,tb_ncs$Slide) out.block-identify(tb_ncs$Slide,tb_ncs$y) On 1/11/07, [EMAIL PROTECTED] [EMAIL PROTECTED] wrote: Dear R-users, Following is part of my data, where slide has 36 levels and block 48 levels. I have done boxplot for each slide on the same graph. There are outliers for each slide and I tried to use indentify functtion to identify outliers in such a way that when I click on an outlier or point, the points will be labelled by either their block or ID or by both but without success. How can I make it work or are there other ways to do it than using identify function? Thanks in advance, dat1[1:10,] y Slide Block ID Control 1 0.03147823 1 1 IgG-human 5 2 -0.23815974 1 1 LPPAANDVSVLTAAR 0 3 -0.71926359 1 1 HTKHYRVVSKPAALV 0 4 -0.14607826 1 1 FVALPAATADAYATT 0 5 0.89553073 1 1 NYPAMMAHAGDMAGY 0 6 -0.67587100 1 1 RRALRQIGVLERPVG 0 7 0.32636034 1 1 DCGTIRVGSFRGRWL 0 8 -1.44057259 1 1 MAKLSTDELLDAFKE 0 9 -0.37064338 1 1 LELSDFVKKFEETFE 0 10 -0.20387233 1 1 VSRRAKVDVLIVHTT 0 tb_ncs-subset(dat1,dat1$Control==1) ### this data contains only negative controls par(las=2,mar=c(10.1,4.1,4.1,2.1)) boxplot(split(tb_ncs$y,tb_ncs$Slide),col=orange, cex=.65, outline=TRUE,main=Negative control response of each patient, cex.main=1, font.main=1, col.main=blue, names=c(1:35,B)) grid(nx=NA, ny=NULL) ### grid over boxplot legend(bottomright, B = Buffer + sec,text.col=blue) out.block- identify(tb_ncs$y,tb_ncs$Slide) _ Flyger tiden iväg? Fånga dagen med Yahoo! Mails inbyggda __ R-help@stat.math.ethz.ch mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code. _ Flyger tiden iväg? Fånga dagen med Yahoo! Mails inbyggda __ R-help@stat.math.ethz.ch mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
[R] Boxplot issue
Dear R-users, I have a data frame containing 2 colums: column 1 is the patient numbers (totally 36 patients), column 2 is patient's response values (each patient has 100 response values). If I produce a boxplot for each patient on the same graph in order to compare them against each other then the boxplots are very small. How can I instead of creating one graph containing 36 boxplots, create four different graphs where three of them have 10 boxplots each representing data of 10 patients and the fourth graph has boxplots of remaining patients ? Thanks alot for any suggestion, Greetings, Antonia __ R-help@stat.math.ethz.ch mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
[R] different points and lines on the same plot
Dear all, I have following data called paitent daypatient1patient4patient5patient6 0 -0.27842688 -0.04080808 -0.41948398 -0.04508318 56 -0.22275425 -0.01767067 -0.30977249 -0.03168185 112 -0.08217659 -0.26209243 -0.29141451 -0.09876170 252 0.08044537 -0.26701769 0.05727087 -0.09663701 where each patient have response values at four time points. I want to plot each patient's values over time on the same plot where the value points are connected by line. That is, the graph will have four lines for the four patients. I tried the program below but couldn't make it work correctly. I'm new beginner and haven't yet learned how functions line and points work together. Hope you can help me out. Thanks for your help, Antonia par(mfrow=c(1,1)) plot(patient[,1],patient[,2], pch=1, type=l,col=1,cex=1,lwd=2, xlab=Days, ylab=Patient response,cex.main =1,font.main= 1, main=NULL) points(patient[,1],patient[,3],col=2,pch=1,cex=1) lines(patient[,1],patient[,3],col=2,lty=1,cex=1) points(patient[,1],patient[,4],col=3,pch=1,cex=1) lines(patient[,1],patient[,4],col=2,lty=2,cex=1) points(patient[,1],patient[,5],col=4,pch=1,cex=1) lines(patient[,1],patient[,5],col=2,lty=1,cex=1) points(patient[,1],patient[,6],col=5,pch=1,cex=1) lines(patient[,1],patient[,6],col=2,lty=1,cex=1) __ R-help@stat.math.ethz.ch mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
[R] new R-user needs help
Dear all, I have a dataset Exp name id x1 x2 x3 x4 x5 1 a1 23 24 23 22 30 1 b2 25 26 27 23 24 1 c3 32 19 23 25 28 2 a4 28 32 24 26 27 2 b5 23 24 25 26 28 2 c6 23 31 30 38 23 3 a7 24 25 31 27 29 3 b8 28 25 26 32 28 3 c9 21 31 28 23 29 where each name a,b and c is repeated three times. Now I want to calculate the the averages of a,b and c over the three experiments for each x. For example for x1 I want to calculate the average of a like [a(from exp1) + a(exp2)+ a(exp3)]/3= (23+28+24)/3 How can I do that ? Thanks for your help, Regards, Antonia __ R-help@stat.math.ethz.ch mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
