[R] Can any one help me on format file data.

2007-07-18 Thread Horacio Castellini
Hi all.
   I'd like know what is the format file saved by  Leica
Microsystems TCS SP2-AOBS equipped with a SP2-FCS2 Leica Microsystems
workstation its datas. Cause it save in *.fcs extention  file but
ins't flow cytometry standart format file...

Tahnks Horacio.

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Re: [R] Can any one help me on format file data.

2007-07-18 Thread Earl F. Glynn

Horacio Castellini [EMAIL PROTECTED] wrote in message 
news:[EMAIL PROTECTED]
 Hi all.
   I'd like know what is the format file saved by  Leica
 Microsystems TCS SP2-AOBS equipped with a SP2-FCS2 Leica Microsystems
 workstation its datas. Cause it save in *.fcs extention  file but
 ins't flow cytometry standart format file...

From a Google search for SP2-FCS2 Leica Microsystems I found this paper 
http://jcs.biologists.org/cgi/reprint/118/24/5825.pdf that talked about 
Fluorescence Correlation Spectroscopy (FCS) data.  Is is possible you have 
Fluorescence Correlation Spectroscopy (FCS) data instead of flow cytometry 
(FCS) data?  I've worked some with both types of FCS data.

I wrote a ConfoCor 3 Fluroescence Correlation Spectroscopy FCS viewer in R:
http://research.stowers-institute.org/efg/ScientificSoftware/Utility/FCSViewer/R.htm.
 
The software that reads that older Fluroescence Correlation Spectroscopy FCS 
data was in Delphi 
http://research.stowers-institute.org/efg/ScientificSoftware/Utility/FCSViewer/index.htm.
 
It would be a bit of a pain to read that older Fluroescence Correlation 
Spectroscopy FCS bit stream in R.   But it'slikely Leica's format is 
different than Zeiss.

I have also worked with some versions of flow cytometery FCS data (e.g., see 
http://research.stowers-institute.org/efg/ScientificSoftware/Utility/FCSExtract/index.htm).
 
There are different versions of that FCS standard too.

If you send me a small file, I'll see if I can recognize if it's a format 
I've seen.

efg

Earl F. Glynn
Scientific Programmer
Stowers Institute for Medical Research

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