[R] Great R documentation

2006-07-31 Thread hadley wickham
Dear all,

I'm trying to improve the documentation I provide my R packages, and
to that end I'd like to find out what you think is great R
documentation.  I'm particularly interested in function documentation,
but great vignettes, websites or book are also of interest.

What is your favourite bit of R documentation, and why?

Thanks,

Hadley

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Re: [R] Great R documentation

2006-07-31 Thread Karl Ove Hufthammer
hadley wickham skreiv:

 I'm trying to improve the documentation I provide my R packages, and
 to that end I'd like to find out what you think is great R
 documentation.  I'm particularly interested in function documentation,
 but great vignettes, websites or book are also of interest.
 
 What is your favourite bit of R documentation, and why?

I find that a graphic is worth *at least* a thousand words. I learn very
much from looking at examples of the graphical output of functions, and
it’s often much easier to look through ‘example(function)’ for a output
that looks similar to what I need, and to tweak it, than to read the
documentation to find out how to create the needed graphic (if it’s
possible at all).

And it’s fun too!

Example:
demo(graphics)
and
library(lattice)
example(xyplot)

These beautiful and interesting graphics.

My advice will therefore be to document every function with plenty of
interesting and useful and different (trivial variants on a graphic is not
interesting) and *pretty* examples.

And do not start the examples section with a very advanced example, with
many parameters and based on many transformations of a data set. For
example, do not write:

... 10 impossible-to-understand lines for generating or transforming
the data set ...
fancyPlot(x,y,data=foo,lw=3,rty=2,bw=full,qrs=partial,method=bayes,
  nw=bar,clp=list(open.edge=TRUE,col=1,doubleMar=list(type=tr)),
  compute=c(o,p,lower,upper),cex=1.2,xlim=range(x)*1.3)

Instead, start with:

fancyPlot(anscombe)

or

x=rnorm(100)
fancyPlot(x)

Then gradually make the examples more advanced or complete.

And do document/comment the examples. Say what’s going on, what the graphic
(or table, or textual output) shows and why it’s interesting.

One more thing: The ‘lattice’ package also has a nice introduction:

?Lattice

I believe all packages should have such a introduction, to give an overview
of the package, what it’s about and some examples of use.

One last advice: If you have a vignette or a demo, do tell in the
‘Description’ of ‘library(help=package)’. It’s *very* easy to miss
otherwise (and many people don’t know that demos or even vignettes exist).

-- 
Karl Ove Hufthammer
E-mail and Jabber: [EMAIL PROTECTED]

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Re: [R] Great R documentation

2006-07-31 Thread Michael Dewey
At 10:09 31/07/2006, hadley wickham wrote:
Dear all,

I'm trying to improve the documentation I provide my R packages, and
to that end I'd like to find out what you think is great R
documentation.  I'm particularly interested in function documentation,

Hadley, I do not think any bit of function documentation, if you mean 
the manual page type documents, is ever that enlightening unless you 
already know what the function does. For me the useful documents are 
the more extended narrative documents.

What I find helpful is:
start with what is the aim of this document
tell me what I am assumed to know first (and ideally tell me where to 
look if I do not)
start with an example using the defaults
tell me what the output means in terms of the scientific problem
tell me what action I might take when it gives me a warning (if that 
is predictable)
tell me about other packages with the same aim and why I should use this one
tell me where to go for more information

but great vignettes, websites or book are also of interest.

What is your favourite bit of R documentation, and why?

Thanks,

Hadley



Michael Dewey
http://www.aghmed.fsnet.co.uk

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Re: [R] Great R documentation

2006-07-31 Thread John Kane

--- hadley wickham [EMAIL PROTECTED] wrote:

 Dear all,
 
 I'm trying to improve the documentation I provide my

I am a new user and at moment I am finding An
Introduction to S and the Hmisc and Design Libraries”
by Carlos Alzola and Frank E. Harrell is very helpful
as it explains some simple data manipulations that
other documentation seems to assume one will know. 

My opinion is that much of the documentation is very
good but very terse and at least in the help files
sometimes a bit too clever.   There seldom seems to be
enough  explaination as to why something does
something which has often left me able to do exactly
what I want to do but having a difficult time
generalizing.


Of course, if I could track down whoever at my local
university has taken out all the R books I might be
much better off. :)

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