[R] Hmisc - latex - table.env not observed

2006-12-23 Thread steve
The following code

library(Hmisc)
x = 1:10
y = x
latex(summary(x~y),table.env=FALSE)
latex(summary(cbind(x,y)),table.env=FALSE)

should produce latex output that is not a table. The second  one 
produces just a tabular, as it should. However, the first one produces a 
tabular embedded in a table. (This is the effect if you leave 
table.env=FALSE out).

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Re: [R] Hmisc - latex - table.env not observed

2006-12-23 Thread Frank E Harrell Jr
steve wrote:
 The following code
 
 library(Hmisc)
 x = 1:10
 y = x
 latex(summary(x~y),table.env=FALSE)
 latex(summary(cbind(x,y)),table.env=FALSE)
 
 should produce latex output that is not a table. The second  one 
 produces just a tabular, as it should. However, the first one produces a 
 tabular embedded in a table. (This is the effect if you leave 
 table.env=FALSE out).

summary(x~y) produces a summary.formula.response object and 
latex.summary.formula.response generates a caption for the table. 
Whenever latex.default sees a caption it sets table.env to TRUE.

You might try the ctable option if you have the ctable style installed 
in LaTeX or we can think about respecting table.env more fully.  But I 
wouldn't know what to do with the caption then.

-- 
Frank E Harrell Jr   Professor and Chair   School of Medicine
  Department of Biostatistics   Vanderbilt University

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[R] Hmisc, latex cdec not as expected

2006-11-06 Thread Henrik Frederik Thomsen
Hello all. 

 

I have encountered at problem when using the Hmisc package to generate
latex-tabels. 

 

I can't seem to control the number of digits in the latex-file. I have
used the Design and Hmisc packages for a while without this problem, but
after upgrading to R-2.4.0 the problem has occured. 

 

I have mad a clean installation where I uninstalled all earliere version
of R, and I re-installed all packages. 

 

Below is a simple example, where the output has 15 digits after the
decimal-point. 

 

I have then tried to use the 'digits'-option, but that gives an error. 

 

 

R version 2.4.0 (2006-10-03)

Copyright (C) 2006 The R Foundation for Statistical Computing

ISBN 3-900051-07-0

 

 library(Design)

  

 tmp - data.frame(x=c(1.0002, 2.013), y=c(1,2))

 tabel - summary(x~y, data=tmp)

 latex(tabel, cdec=3)

 latex(tabel, digits=3)

Error in format.df(object, dcolumn = dcolumn, na.blank = na.blank,
numeric.dollar = numeric.dollar,  : 

only one of digits, dec, rdec, cdec may be given



 

I hope someone can help. 

 

With kind regards Henrik 

 

__

Henrik F. Thomsen

Msc, PhD, statistician


[[alternative HTML version deleted]]

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[R] Hmisc, latex cdec not as expected - again

2006-11-06 Thread Henrik Frederik Thomsen
Hello all. 

Sorry for reposting this message, but I accedently sent it in
HTML-format the first time. 

I have encountered at problem when using the Hmisc package to generate
latex-tabels. 

I can't seem to control the number of digits in the latex-file. I have
used the Design and Hmisc packages for a while without this problem, but
after upgrading to R-2.4.0 the problem has occured. 


I have made a clean installation where I uninstalled all earliere
version
of R, and I re-installed all packages. 

Below is a simple example, where the output has 15 digits after the
decimal-point. 

I have then tried to use the 'digits'-option, but that gives an error. 

R version 2.4.0 (2006-10-03)
Copyright (C) 2006 The R Foundation for Statistical Computing
ISBN 3-900051-07-0

 
 library(Design)
  
 tmp - data.frame(x=c(1.0002, 2.013), y=c(1,2))
 tabel - summary(x~y, data=tmp)
 latex(tabel, cdec=3)
 latex(tabel, digits=3)
Error in format.df(object, dcolumn = dcolumn, na.blank = na.blank,
numeric.dollar = numeric.dollar,  : 

only one of digits, dec, rdec, cdec may be given



I hope someone can help. 


With kind regards Henrik

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Re: [R] Hmisc, latex cdec not as expected - again

2006-11-06 Thread Dieter Menne
Henrik Frederik Thomsen HFTH at DCE.AU.DK writes:


 I have encountered at problem when using the Hmisc package to generate
 latex-tabels. 
 
 I can't seem to control the number of digits in the latex-file. I have
 used the Design and Hmisc packages for a while without this problem, but
 after upgrading to R-2.4.0 the problem has occured. 
...

This bug has been confirmed by Frank Harrell and Thomas Dupont on October 25.
They are working on it.

Dieter

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Re: [R] Hmisc latex cell background color

2005-12-18 Thread Dieter Menne
David Whiting david.whiting at ncl.ac.uk writes:

 The nearest I got to was to be able to colour row. Take a look at Table
 10 here:
 
 
http://biostat.mc.vanderbilt.edu/twiki/pub/Main/StatReport/latexFineControl.pdf
 

After some private emailing with David and downloading the latest version of 
the docs, I found the new command \cellcolor in colortbl, which makes coloring 
of single cells painless.

Deter

library(Hmisc)

x - as.data.frame(diag(rnorm(3),nrow=3))
cellTex - matrix(rep(, NROW(x) * NCOL(x)), nrow=NROW(x))
cellTex[2,2] - \cellcolor{red}
ct - latex(x, cellTexCmds = cellTex,numeric.dollar=FALSE)
ct$style - colortbl # this forces load of colortbl (not documented?)
dvi(ct)

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Re: [R] Hmisc latex cell background color

2005-12-17 Thread David Whiting
Hi Dieter,

The nearest I got to was to be able to colour row. Take a look at Table
10 here:

http://biostat.mc.vanderbilt.edu/twiki/pub/Main/StatReport/latexFineControl.pdf

I used the latex package colotbl (see the definition of \shadeRow in
section 1). I didn't play any further with this. It might be possible
that colortbl has further commands ora mechanism for colouring
individual cells.

Dave


Dieter Menne wrote:
 Dear latex/R-Sweavers,
 
 Using the codel below, I can color text in individual cells for latex
 output.
 Is there a similar way to get a background shading? My attempts failed
 because I did not get the closing brace at the right place with Hmisc/latex.
 
 library(Hmisc)
 
 x - as.data.frame(diag(rnorm(3),nrow=3))
 cellTex - matrix(rep(, NROW(x) * NCOL(x)), nrow=NROW(x))
 cellTex[2,2] - \color{red}
 ct - latex(x, cellTexCmds = cellTex,numeric.dollar=FALSE)
 ct$style - color
 dvi(ct)
 
 
 Dieter
 
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-- 
David Whiting
School of Clinical Medical Sciences, The Medical School
University of Newcastle upon Tyne, NE2 4HH, UK.

In God we trust, all others must bring data  W. Edwards Deming

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Re: [R] Hmisc latex function

2005-12-16 Thread Marc Schwartz
Paul,

I believe that the bug has been fixed in the CVS version of latex(), but
it has not yet made its way to an updated version of Hmisc on CRAN from
what I can see.

You can get the updated version of latex() from:

http://biostat.mc.vanderbilt.edu/cgi-bin/cvsweb.cgi/Hmisc/R/latex.s

Click on the 'download' link for version 1.14 at the top of the page.
You can save the updated code to a text file and then source() it into a
R session for the time being.

HTH,

Marc Schwartz

On Thu, 2005-12-15 at 15:53 -0600, Paul Johnson wrote:
 Does anybody suggest a work-around this problem?
 
 pj
 
 Marc Schwartz (via MN) wrote:
  On Wed, 2005-10-12 at 08:33 -0500, Charles Dupont wrote:
  
 Marc Schwartz (via MN) wrote:
 
 On Tue, 2005-10-11 at 10:01 -0400, Rick Bilonick wrote:
 
 
 I'm using R 2.2.0 on an up-to-date version of Fedora Core 4 with the
 latest version of Hmisc. When I run an example from the latex function I
 get the following:
 
 
 
 x - matrix(1:6, nrow=2, dimnames=list(c('a','b'),c('c','d','enLine
 
 2')))
 
 
 x
 
  c d enLine 2
 a 1 35
 b 2 46
 
 
 latex(x)   # creates x.tex in working directory
 
 sh: line 0: cd: “/tmp/Rtmpl10983”: No such file or directory
 This is pdfeTeX, Version 3.141592-1.21a-2.2 (Web2C 7.5.4)
 entering extended mode
 ! I can't find file `“/tmp/Rtmpl10983/file643c9869”'.
 * “/tmp/Rtmpl10983/file643c9869”
 
 Please type another input file name: q
 (/usr/share/texmf/tex/latex/tools/q.tex
 LaTeX2e 2003/12/01
 Babel v3.8d and hyphenation patterns for american, french, german,
 ngerman, b
 ahasa, basque, bulgarian, catalan, croatian, czech, danish, dutch,
 esperanto, e
 stonian, finnish, greek, icelandic, irish, italian, latin, magyar,
 norsk, polis
 h, portuges, romanian, russian, serbian, slovak, slovene, spanish,
 swedish, tur
 kish, ukrainian, nohyphenation, loaded.
 File ignored
 xdvi-motif.bin: Fatal error: /tmp/Rtmpl10983/file643c9869.dvi: No such
 file.
 
 
 How can I fix this?
 
 Rick B.
 
 
 I get the same results, also on FC4 with R 2.2.0.
 
 I am cc:ing Frank here for his input, but a quick review of the code and
 created files suggests that there may be conflict between the locations
 of some of the resultant files during the latex system call. Some files
 appear in a temporary R directory, while others appear in the current R
 working directory.
 
 For example, if I enter the full filename:
  
   /tmp/RtmpC12100/file643c9869.tex
 
 at the latex prompt, I get:
 
 
 
 latex(x)
 
 sh: line 0: cd: “/tmp/RtmpC12100”: No such file or directory
 This is pdfeTeX, Version 3.141592-1.21a-2.2 (Web2C 7.5.4)
 entering extended mode
 ! I can't find file `“/tmp/RtmpC12100/file643c9869”'.
 * “/tmp/RtmpC12100/file643c9869”
 
 Please type another input file name: *** loading the extensions
 datasource
 /tmp/RtmpC12100/file643c9869.tex
 (/tmp/RtmpC12100/file643c9869.tex
 LaTeX2e 2003/12/01
 Babel v3.8d and hyphenation patterns for american, french, german,
 ngerman, b
 ahasa, basque, bulgarian, catalan, croatian, czech, danish, dutch,
 esperanto, e
 stonian, finnish, greek, icelandic, irish, italian, latin, magyar,
 norsk, polis
 h, portuges, romanian, russian, serbian, slovak, slovene, spanish,
 swedish, tur
 kish, ukrainian, nohyphenation, loaded.
 (/usr/share/texmf/tex/latex/base/report.cls
 Document Class: report 2004/02/16 v1.4f Standard LaTeX document class
 (/usr/share/texmf/tex/latex/base/size10.clo))
 (/usr/share/texmf/tex/latex/geometry/geometry.sty
 (/usr/share/texmf/tex/latex/graphics/keyval.sty)
 (/usr/share/texmf/tex/latex/geometry/geometry.cfg))
 No file file643c9869.aux.
 [1] (./file643c9869.aux) )
 Output written on file643c9869.dvi (1 page, 368 bytes).
 Transcript written on file643c9869.log.
 xdvi-motif.bin: Fatal error: /tmp/RtmpC12100/file643c9869.dvi
 
 
 H,  It works for me.  Interesting.
 
 It almost looks like the temp dir is not being created, but thats not 
 possible because R does that.  It might be a Unicode issue with you 
 system shell.  Can you run this statement in R
 
 sys(paste('cd',dQuote(tempdir()),;,
 echo Hello BOB  test.test,
 ;,cat test.test))
 
 
 What version of Hmisc are you using?  What local are you using?
 
 Charles
  
  
  Hmisc version 3.0-7, Dated 2005-09-15, which is the latest according to
  CRAN.
  
  
 sys(paste('cd',dQuote(tempdir()),;,
  
  + echo Hello BOB  test.test,
  + ;,cat test.test))
  sh: line 0: cd: “/tmp/RtmpGY5553”: No such file or directory
  [1] Hello BOB
  
  
 From a bash console:
  
  $ cd /tmp/RtmpGY5553
  $ pwd
  /tmp/RtmpGY5553
  
  
  $ locale
  LANG=en_US.UTF-8
  LC_CTYPE=en_US.UTF-8
  LC_NUMERIC=en_US.UTF-8
  LC_TIME=en_US.UTF-8
  LC_COLLATE=en_US.UTF-8
  LC_MONETARY=en_US.UTF-8
  LC_MESSAGES=en_US.UTF-8
  LC_PAPER=en_US.UTF-8
  LC_NAME=en_US.UTF-8
  LC_ADDRESS=en_US.UTF-8
  LC_TELEPHONE=en_US.UTF-8
  LC_MEASUREMENT=en_US.UTF-8
  LC_IDENTIFICATION=en_US.UTF-8
  LC_ALL=
  
  
  On the creation of the sys() call, it looks like the backquotes are
  causing the problem:
  
  
 

[R] Hmisc latex cell background color

2005-12-15 Thread Dieter Menne
Dear latex/R-Sweavers,

Using the codel below, I can color text in individual cells for latex
output.
Is there a similar way to get a background shading? My attempts failed
because I did not get the closing brace at the right place with Hmisc/latex.

library(Hmisc)

x - as.data.frame(diag(rnorm(3),nrow=3))
cellTex - matrix(rep(, NROW(x) * NCOL(x)), nrow=NROW(x))
cellTex[2,2] - \color{red}
ct - latex(x, cellTexCmds = cellTex,numeric.dollar=FALSE)
ct$style - color
dvi(ct)


Dieter

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Re: [R] Hmisc latex function

2005-12-15 Thread Paul Johnson
Does anybody suggest a work-around this problem?

pj

Marc Schwartz (via MN) wrote:
 On Wed, 2005-10-12 at 08:33 -0500, Charles Dupont wrote:
 
Marc Schwartz (via MN) wrote:

On Tue, 2005-10-11 at 10:01 -0400, Rick Bilonick wrote:


I'm using R 2.2.0 on an up-to-date version of Fedora Core 4 with the
latest version of Hmisc. When I run an example from the latex function I
get the following:



x - matrix(1:6, nrow=2, dimnames=list(c('a','b'),c('c','d','enLine

2')))


x

 c d enLine 2
a 1 35
b 2 46


latex(x)   # creates x.tex in working directory

sh: line 0: cd: “/tmp/Rtmpl10983”: No such file or directory
This is pdfeTeX, Version 3.141592-1.21a-2.2 (Web2C 7.5.4)
entering extended mode
! I can't find file `“/tmp/Rtmpl10983/file643c9869”'.
* “/tmp/Rtmpl10983/file643c9869”

Please type another input file name: q
(/usr/share/texmf/tex/latex/tools/q.tex
LaTeX2e 2003/12/01
Babel v3.8d and hyphenation patterns for american, french, german,
ngerman, b
ahasa, basque, bulgarian, catalan, croatian, czech, danish, dutch,
esperanto, e
stonian, finnish, greek, icelandic, irish, italian, latin, magyar,
norsk, polis
h, portuges, romanian, russian, serbian, slovak, slovene, spanish,
swedish, tur
kish, ukrainian, nohyphenation, loaded.
File ignored
xdvi-motif.bin: Fatal error: /tmp/Rtmpl10983/file643c9869.dvi: No such
file.


How can I fix this?

Rick B.


I get the same results, also on FC4 with R 2.2.0.

I am cc:ing Frank here for his input, but a quick review of the code and
created files suggests that there may be conflict between the locations
of some of the resultant files during the latex system call. Some files
appear in a temporary R directory, while others appear in the current R
working directory.

For example, if I enter the full filename:
 
  /tmp/RtmpC12100/file643c9869.tex

at the latex prompt, I get:



latex(x)

sh: line 0: cd: “/tmp/RtmpC12100”: No such file or directory
This is pdfeTeX, Version 3.141592-1.21a-2.2 (Web2C 7.5.4)
entering extended mode
! I can't find file `“/tmp/RtmpC12100/file643c9869”'.
* “/tmp/RtmpC12100/file643c9869”

Please type another input file name: *** loading the extensions
datasource
/tmp/RtmpC12100/file643c9869.tex
(/tmp/RtmpC12100/file643c9869.tex
LaTeX2e 2003/12/01
Babel v3.8d and hyphenation patterns for american, french, german,
ngerman, b
ahasa, basque, bulgarian, catalan, croatian, czech, danish, dutch,
esperanto, e
stonian, finnish, greek, icelandic, irish, italian, latin, magyar,
norsk, polis
h, portuges, romanian, russian, serbian, slovak, slovene, spanish,
swedish, tur
kish, ukrainian, nohyphenation, loaded.
(/usr/share/texmf/tex/latex/base/report.cls
Document Class: report 2004/02/16 v1.4f Standard LaTeX document class
(/usr/share/texmf/tex/latex/base/size10.clo))
(/usr/share/texmf/tex/latex/geometry/geometry.sty
(/usr/share/texmf/tex/latex/graphics/keyval.sty)
(/usr/share/texmf/tex/latex/geometry/geometry.cfg))
No file file643c9869.aux.
[1] (./file643c9869.aux) )
Output written on file643c9869.dvi (1 page, 368 bytes).
Transcript written on file643c9869.log.
xdvi-motif.bin: Fatal error: /tmp/RtmpC12100/file643c9869.dvi


H,  It works for me.  Interesting.

It almost looks like the temp dir is not being created, but thats not 
possible because R does that.  It might be a Unicode issue with you 
system shell.  Can you run this statement in R

sys(paste('cd',dQuote(tempdir()),;,
echo Hello BOB  test.test,
;,cat test.test))


What version of Hmisc are you using?  What local are you using?

Charles
 
 
 Hmisc version 3.0-7, Dated 2005-09-15, which is the latest according to
 CRAN.
 
 
sys(paste('cd',dQuote(tempdir()),;,
 
 + echo Hello BOB  test.test,
 + ;,cat test.test))
 sh: line 0: cd: “/tmp/RtmpGY5553”: No such file or directory
 [1] Hello BOB
 
 
From a bash console:
 
 $ cd /tmp/RtmpGY5553
 $ pwd
 /tmp/RtmpGY5553
 
 
 $ locale
 LANG=en_US.UTF-8
 LC_CTYPE=en_US.UTF-8
 LC_NUMERIC=en_US.UTF-8
 LC_TIME=en_US.UTF-8
 LC_COLLATE=en_US.UTF-8
 LC_MONETARY=en_US.UTF-8
 LC_MESSAGES=en_US.UTF-8
 LC_PAPER=en_US.UTF-8
 LC_NAME=en_US.UTF-8
 LC_ADDRESS=en_US.UTF-8
 LC_TELEPHONE=en_US.UTF-8
 LC_MEASUREMENT=en_US.UTF-8
 LC_IDENTIFICATION=en_US.UTF-8
 LC_ALL=
 
 
 On the creation of the sys() call, it looks like the backquotes are
 causing the problem:
 
 
paste('cd',dQuote(tempdir()))
 
 [1] cd “/tmp/RtmpGY5553”
 
 
From a bash shell:
 
 $ cd “/tmp/RtmpGY5553”
 bash: cd: “/tmp/RtmpGY5553”: No such file or directory
 $ cd /tmp/RtmpGY5553
 $ pwd
 /tmp/RtmpGY5553
 
 
 According to ?dQuote:
 
 By default, sQuote and dQuote provide undirectional ASCII quotation
 style. In a UTF-8 locale (see l10n_info), the Unicode directional quotes
 are used.
 
 The See Also points to shQuote for quoting OS commands.
 
 
 HTH,
 
 Marc
 
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[R] Hmisc latex format.df by row formatting?

2005-12-08 Thread Dieter Menne
Using Hmisc, I get the following output from format.df (which will feed to
latex)

   Min Q1  Med   Mean  Q3  Max
Age 30  32.5  36  37.50  41.00  49
Height 174 175.0 178 179.00 181.00 188
Weight  68  74.0  78  76.67  79.75  83

Automatic decimal points adjustments does not exactly do what I want in this
case. It would be nice to have the same number of decimals row-wise.

Is there a simple way to tell format.df to do this?

Dieter

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Re: [R] Hmisc latex format.df by row formatting?

2005-12-08 Thread Dieter Menne
Dieter Menne dieter.menne at menne-biomed.de writes:

 
 Using Hmisc, I get the following output from format.df (which will feed to
 latex)
 
Min Q1  Med   Mean  Q3  Max
 Age 30  32.5  36  37.50  41.00  49
 Height 174 175.0 178 179.00 181.00 188
 Weight  68  74.0  78  76.67  79.75  83
 
 Automatic decimal points adjustments does not exactly do what I want in this
 case. It would be nice to have the same number of decimals row-wise.


Try something like:

 xt = t(format.df(t(as.matrix(xt

Dieter

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Re: [R] Hmisc latex function

2005-10-16 Thread Peter Dalgaard
Charles Dupont [EMAIL PROTECTED] writes:

 For a temporary fix source the attached file after loading the Hmisc
 library.  I will fix this in source for the next version.

Or, slightly shorter but somewhat dirtier:

 evalq(dQuote - shQuote, environment(latex))


-- 
   O__   Peter Dalgaard Øster Farimagsgade 5, Entr.B
  c/ /'_ --- Dept. of Biostatistics PO Box 2099, 1014 Cph. K
 (*) \(*) -- University of Copenhagen   Denmark  Ph:  (+45) 35327918
~~ - ([EMAIL PROTECTED])  FAX: (+45) 35327907

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Re: [R] Hmisc latex function

2005-10-12 Thread Charles Dupont
Marc Schwartz (via MN) wrote:
 On Tue, 2005-10-11 at 10:01 -0400, Rick Bilonick wrote:
 
I'm using R 2.2.0 on an up-to-date version of Fedora Core 4 with the
latest version of Hmisc. When I run an example from the latex function I
get the following:


x - matrix(1:6, nrow=2, dimnames=list(c('a','b'),c('c','d','enLine

2')))

x

  c d enLine 2
a 1 35
b 2 46

latex(x)   # creates x.tex in working directory

sh: line 0: cd: “/tmp/Rtmpl10983”: No such file or directory
This is pdfeTeX, Version 3.141592-1.21a-2.2 (Web2C 7.5.4)
entering extended mode
! I can't find file `“/tmp/Rtmpl10983/file643c9869”'.
* “/tmp/Rtmpl10983/file643c9869”

Please type another input file name: q
(/usr/share/texmf/tex/latex/tools/q.tex
LaTeX2e 2003/12/01
Babel v3.8d and hyphenation patterns for american, french, german,
ngerman, b
ahasa, basque, bulgarian, catalan, croatian, czech, danish, dutch,
esperanto, e
stonian, finnish, greek, icelandic, irish, italian, latin, magyar,
norsk, polis
h, portuges, romanian, russian, serbian, slovak, slovene, spanish,
swedish, tur
kish, ukrainian, nohyphenation, loaded.
File ignored
xdvi-motif.bin: Fatal error: /tmp/Rtmpl10983/file643c9869.dvi: No such
file.


How can I fix this?

Rick B.
 
 
 I get the same results, also on FC4 with R 2.2.0.
 
 I am cc:ing Frank here for his input, but a quick review of the code and
 created files suggests that there may be conflict between the locations
 of some of the resultant files during the latex system call. Some files
 appear in a temporary R directory, while others appear in the current R
 working directory.
 
 For example, if I enter the full filename:
  
   /tmp/RtmpC12100/file643c9869.tex
 
 at the latex prompt, I get:
 
 
latex(x)
 
 sh: line 0: cd: “/tmp/RtmpC12100”: No such file or directory
 This is pdfeTeX, Version 3.141592-1.21a-2.2 (Web2C 7.5.4)
 entering extended mode
 ! I can't find file `“/tmp/RtmpC12100/file643c9869”'.
 * “/tmp/RtmpC12100/file643c9869”
 
 Please type another input file name: *** loading the extensions
 datasource
 /tmp/RtmpC12100/file643c9869.tex
 (/tmp/RtmpC12100/file643c9869.tex
 LaTeX2e 2003/12/01
 Babel v3.8d and hyphenation patterns for american, french, german,
 ngerman, b
 ahasa, basque, bulgarian, catalan, croatian, czech, danish, dutch,
 esperanto, e
 stonian, finnish, greek, icelandic, irish, italian, latin, magyar,
 norsk, polis
 h, portuges, romanian, russian, serbian, slovak, slovene, spanish,
 swedish, tur
 kish, ukrainian, nohyphenation, loaded.
 (/usr/share/texmf/tex/latex/base/report.cls
 Document Class: report 2004/02/16 v1.4f Standard LaTeX document class
 (/usr/share/texmf/tex/latex/base/size10.clo))
 (/usr/share/texmf/tex/latex/geometry/geometry.sty
 (/usr/share/texmf/tex/latex/graphics/keyval.sty)
 (/usr/share/texmf/tex/latex/geometry/geometry.cfg))
 No file file643c9869.aux.
 [1] (./file643c9869.aux) )
 Output written on file643c9869.dvi (1 page, 368 bytes).
 Transcript written on file643c9869.log.
 xdvi-motif.bin: Fatal error: /tmp/RtmpC12100/file643c9869.dvi


H,  It works for me.  Interesting.

It almost looks like the temp dir is not being created, but thats not 
possible because R does that.  It might be a Unicode issue with you 
system shell.  Can you run this statement in R

sys(paste('cd',dQuote(tempdir()),;,
echo Hello BOB  test.test,
;,cat test.test))


What version of Hmisc are you using?  What local are you using?

Charles

-- 
Charles Dupont  Computer System Analyst School of Medicine
Department of Biostatistics Vanderbilt University

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Re: [R] Hmisc latex function

2005-10-12 Thread Rick Bilonick
Charles Dupont wrote:

 Marc Schwartz (via MN) wrote:

 On Tue, 2005-10-11 at 10:01 -0400, Rick Bilonick wrote:

 I'm using R 2.2.0 on an up-to-date version of Fedora Core 4 with the
 latest version of Hmisc. When I run an example from the latex 
 function I
 get the following:


 x - matrix(1:6, nrow=2, dimnames=list(c('a','b'),c('c','d','enLine


 2')))

 x


  c d enLine 2
 a 1 35
 b 2 46

 latex(x)   # creates x.tex in working directory


 sh: line 0: cd: “/tmp/Rtmpl10983”: No such file or directory
 This is pdfeTeX, Version 3.141592-1.21a-2.2 (Web2C 7.5.4)
 entering extended mode
 ! I can't find file `“/tmp/Rtmpl10983/file643c9869”'.
 * “/tmp/Rtmpl10983/file643c9869”

 Please type another input file name: q
 (/usr/share/texmf/tex/latex/tools/q.tex
 LaTeX2e 2003/12/01
 Babel v3.8d and hyphenation patterns for american, french, german,
 ngerman, b
 ahasa, basque, bulgarian, catalan, croatian, czech, danish, dutch,
 esperanto, e
 stonian, finnish, greek, icelandic, irish, italian, latin, magyar,
 norsk, polis
 h, portuges, romanian, russian, serbian, slovak, slovene, spanish,
 swedish, tur
 kish, ukrainian, nohyphenation, loaded.
 File ignored
 xdvi-motif.bin: Fatal error: /tmp/Rtmpl10983/file643c9869.dvi: No such
 file.


 How can I fix this?

 Rick B.



 I get the same results, also on FC4 with R 2.2.0.

 I am cc:ing Frank here for his input, but a quick review of the code and
 created files suggests that there may be conflict between the locations
 of some of the resultant files during the latex system call. Some files
 appear in a temporary R directory, while others appear in the current R
 working directory.

 For example, if I enter the full filename:
  
   /tmp/RtmpC12100/file643c9869.tex

 at the latex prompt, I get:


 latex(x)


 sh: line 0: cd: “/tmp/RtmpC12100”: No such file or directory
 This is pdfeTeX, Version 3.141592-1.21a-2.2 (Web2C 7.5.4)
 entering extended mode
 ! I can't find file `“/tmp/RtmpC12100/file643c9869”'.
 * “/tmp/RtmpC12100/file643c9869”

 Please type another input file name: *** loading the extensions
 datasource
 /tmp/RtmpC12100/file643c9869.tex
 (/tmp/RtmpC12100/file643c9869.tex
 LaTeX2e 2003/12/01
 Babel v3.8d and hyphenation patterns for american, french, german,
 ngerman, b
 ahasa, basque, bulgarian, catalan, croatian, czech, danish, dutch,
 esperanto, e
 stonian, finnish, greek, icelandic, irish, italian, latin, magyar,
 norsk, polis
 h, portuges, romanian, russian, serbian, slovak, slovene, spanish,
 swedish, tur
 kish, ukrainian, nohyphenation, loaded.
 (/usr/share/texmf/tex/latex/base/report.cls
 Document Class: report 2004/02/16 v1.4f Standard LaTeX document class
 (/usr/share/texmf/tex/latex/base/size10.clo))
 (/usr/share/texmf/tex/latex/geometry/geometry.sty
 (/usr/share/texmf/tex/latex/graphics/keyval.sty)
 (/usr/share/texmf/tex/latex/geometry/geometry.cfg))
 No file file643c9869.aux.
 [1] (./file643c9869.aux) )
 Output written on file643c9869.dvi (1 page, 368 bytes).
 Transcript written on file643c9869.log.
 xdvi-motif.bin: Fatal error: /tmp/RtmpC12100/file643c9869.dvi



 H,  It works for me.  Interesting.

 It almost looks like the temp dir is not being created, but thats not 
 possible because R does that.  It might be a Unicode issue with you 
 system shell.  Can you run this statement in R

 sys(paste('cd',dQuote(tempdir()),;,
 echo Hello BOB  test.test,
 ;,cat test.test))


 What version of Hmisc are you using?  What local are you using?

 Charles

I'm using Hmisc 3.0-7 (2005-09-15). I did an update.packages right after 
installing R 2.2.0. Here is the output I get:

sh: line 0: c: /tmp/RtmpSp4207: No such file or directory
[1] Hello BOB

Thanks.

Rick B.

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Re: [R] Hmisc latex function

2005-10-12 Thread Peter Dalgaard
Charles Dupont [EMAIL PROTECTED] writes:

 H,  It works for me.  Interesting.
 
 It almost looks like the temp dir is not being created, but thats not 
 possible because R does that.  It might be a Unicode issue with you 
 system shell.  Can you run this statement in R

It's a Unicode issue alright. dQuote is intended for textual output,
and in UTF-8 locales it will use Unicode codepoints 0x201c and 0x201d,
which the shell is not expected to make head or tails of.

The help page would have told you, and pointed you to shQuote() as
well...
 
 sys(paste('cd',dQuote(tempdir()),;,
 echo Hello BOB  test.test,
 ;,cat test.test))
 
 
 What version of Hmisc are you using?  What local are you using?
 
 Charles
 
 -- 
 Charles DupontComputer System Analyst School of Medicine
   Department of Biostatistics Vanderbilt University
 
 __
 R-help@stat.math.ethz.ch mailing list
 https://stat.ethz.ch/mailman/listinfo/r-help
 PLEASE do read the posting guide! http://www.R-project.org/posting-guide.html

-- 
   O__   Peter Dalgaard Øster Farimagsgade 5, Entr.B
  c/ /'_ --- Dept. of Biostatistics PO Box 2099, 1014 Cph. K
 (*) \(*) -- University of Copenhagen   Denmark  Ph:  (+45) 35327918
~~ - ([EMAIL PROTECTED])  FAX: (+45) 35327907

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Re: [R] Hmisc latex function

2005-10-12 Thread David Whiting
Charles Dupont wrote:
[...]

 
 
 H,  It works for me.  Interesting.
 
 It almost looks like the temp dir is not being created, but thats not 
 possible because R does that.  It might be a Unicode issue with you 
 system shell.  Can you run this statement in R
 
 sys(paste('cd',dQuote(tempdir()),;,
 echo Hello BOB  test.test,
 ;,cat test.test))
 
 
 What version of Hmisc are you using?  What local are you using?
 
 Charles
 

I've had similar problems latex() which I tracked down to dQuote() that
I think are related to unicode and locales on Ubuntu 5.04. I think the
problem is with Ubuntu (because I get funny little boxes now and then
with various applications), but have not managed to get my head around
unicode sufficiently well to be able to write a sensible post about this
or work out how to fix it. My current way of getting around this in R is
to change the locale:

 Sys.getlocale()
[1]
LC_CTYPE=en_GB.UTF-8;LC_NUMERIC=C;LC_TIME=en_GB.UTF-8;LC_COLLATE=en_GB.UTF-8;LC_MONETARY=en_GB.UTF-8;LC_MESSAGES=en_GB.UTF-8;LC_PAPER=C;LC_NAME=C;LC_ADDRESS=C;LC_TELEPHONE=C;LC_MEASUREMENT=C;LC_IDENTIFICATION=C
 tempdir()
[1] /tmp/RtmpWL64Z2
 dQuote(tempdir())
[1] “/tmp/RtmpWL64Z2”  [I get funny little boxes here]
 Sys.setlocale(LC_CTYPE, C)
[1] C
 Sys.getlocale()
[1]
LC_CTYPE=C;LC_NUMERIC=C;LC_TIME=en_GB.UTF-8;LC_COLLATE=en_GB.UTF-8;LC_MONETARY=en_GB.UTF-8;LC_MESSAGES=en_GB.UTF-8;LC_PAPER=C;LC_NAME=C;LC_ADDRESS=C;LC_TELEPHONE=C;LC_MEASUREMENT=C;LC_IDENTIFICATION=C
 dQuote(tempdir())
[1] \/tmp/RtmpWL64Z2\ [No funny boxes this time]

 version
 _
platform i686-pc-linux-gnu
arch i686
os   linux-gnu
system   i686, linux-gnu
status
major2
minor1.1
year 2005
month06
day  20
language R


[Hmmm, I need to update my R installation]

-- 
David Whiting
School of Clinical Medical Sciences, The Medical School
University of Newcastle upon Tyne, NE2 4HH, UK.

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Re: [R] Hmisc latex function

2005-10-12 Thread Marc Schwartz (via MN)
On Wed, 2005-10-12 at 08:33 -0500, Charles Dupont wrote:
 Marc Schwartz (via MN) wrote:
  On Tue, 2005-10-11 at 10:01 -0400, Rick Bilonick wrote:
  
 I'm using R 2.2.0 on an up-to-date version of Fedora Core 4 with the
 latest version of Hmisc. When I run an example from the latex function I
 get the following:
 
 
 x - matrix(1:6, nrow=2, dimnames=list(c('a','b'),c('c','d','enLine
 
 2')))
 
 x
 
   c d enLine 2
 a 1 35
 b 2 46
 
 latex(x)   # creates x.tex in working directory
 
 sh: line 0: cd: “/tmp/Rtmpl10983”: No such file or directory
 This is pdfeTeX, Version 3.141592-1.21a-2.2 (Web2C 7.5.4)
 entering extended mode
 ! I can't find file `“/tmp/Rtmpl10983/file643c9869”'.
 * “/tmp/Rtmpl10983/file643c9869”
 
 Please type another input file name: q
 (/usr/share/texmf/tex/latex/tools/q.tex
 LaTeX2e 2003/12/01
 Babel v3.8d and hyphenation patterns for american, french, german,
 ngerman, b
 ahasa, basque, bulgarian, catalan, croatian, czech, danish, dutch,
 esperanto, e
 stonian, finnish, greek, icelandic, irish, italian, latin, magyar,
 norsk, polis
 h, portuges, romanian, russian, serbian, slovak, slovene, spanish,
 swedish, tur
 kish, ukrainian, nohyphenation, loaded.
 File ignored
 xdvi-motif.bin: Fatal error: /tmp/Rtmpl10983/file643c9869.dvi: No such
 file.
 
 
 How can I fix this?
 
 Rick B.
  
  
  I get the same results, also on FC4 with R 2.2.0.
  
  I am cc:ing Frank here for his input, but a quick review of the code and
  created files suggests that there may be conflict between the locations
  of some of the resultant files during the latex system call. Some files
  appear in a temporary R directory, while others appear in the current R
  working directory.
  
  For example, if I enter the full filename:
   
/tmp/RtmpC12100/file643c9869.tex
  
  at the latex prompt, I get:
  
  
 latex(x)
  
  sh: line 0: cd: “/tmp/RtmpC12100”: No such file or directory
  This is pdfeTeX, Version 3.141592-1.21a-2.2 (Web2C 7.5.4)
  entering extended mode
  ! I can't find file `“/tmp/RtmpC12100/file643c9869”'.
  * “/tmp/RtmpC12100/file643c9869”
  
  Please type another input file name: *** loading the extensions
  datasource
  /tmp/RtmpC12100/file643c9869.tex
  (/tmp/RtmpC12100/file643c9869.tex
  LaTeX2e 2003/12/01
  Babel v3.8d and hyphenation patterns for american, french, german,
  ngerman, b
  ahasa, basque, bulgarian, catalan, croatian, czech, danish, dutch,
  esperanto, e
  stonian, finnish, greek, icelandic, irish, italian, latin, magyar,
  norsk, polis
  h, portuges, romanian, russian, serbian, slovak, slovene, spanish,
  swedish, tur
  kish, ukrainian, nohyphenation, loaded.
  (/usr/share/texmf/tex/latex/base/report.cls
  Document Class: report 2004/02/16 v1.4f Standard LaTeX document class
  (/usr/share/texmf/tex/latex/base/size10.clo))
  (/usr/share/texmf/tex/latex/geometry/geometry.sty
  (/usr/share/texmf/tex/latex/graphics/keyval.sty)
  (/usr/share/texmf/tex/latex/geometry/geometry.cfg))
  No file file643c9869.aux.
  [1] (./file643c9869.aux) )
  Output written on file643c9869.dvi (1 page, 368 bytes).
  Transcript written on file643c9869.log.
  xdvi-motif.bin: Fatal error: /tmp/RtmpC12100/file643c9869.dvi
 
 
 H,  It works for me.  Interesting.
 
 It almost looks like the temp dir is not being created, but thats not 
 possible because R does that.  It might be a Unicode issue with you 
 system shell.  Can you run this statement in R
 
 sys(paste('cd',dQuote(tempdir()),;,
 echo Hello BOB  test.test,
 ;,cat test.test))
 
 
 What version of Hmisc are you using?  What local are you using?
 
 Charles

Hmisc version 3.0-7, Dated 2005-09-15, which is the latest according to
CRAN.

 sys(paste('cd',dQuote(tempdir()),;,
+ echo Hello BOB  test.test,
+ ;,cat test.test))
sh: line 0: cd: “/tmp/RtmpGY5553”: No such file or directory
[1] Hello BOB


From a bash console:

$ cd /tmp/RtmpGY5553
$ pwd
/tmp/RtmpGY5553


$ locale
LANG=en_US.UTF-8
LC_CTYPE=en_US.UTF-8
LC_NUMERIC=en_US.UTF-8
LC_TIME=en_US.UTF-8
LC_COLLATE=en_US.UTF-8
LC_MONETARY=en_US.UTF-8
LC_MESSAGES=en_US.UTF-8
LC_PAPER=en_US.UTF-8
LC_NAME=en_US.UTF-8
LC_ADDRESS=en_US.UTF-8
LC_TELEPHONE=en_US.UTF-8
LC_MEASUREMENT=en_US.UTF-8
LC_IDENTIFICATION=en_US.UTF-8
LC_ALL=


On the creation of the sys() call, it looks like the backquotes are
causing the problem:

 paste('cd',dQuote(tempdir()))
[1] cd “/tmp/RtmpGY5553”


From a bash shell:

$ cd “/tmp/RtmpGY5553”
bash: cd: “/tmp/RtmpGY5553”: No such file or directory
$ cd /tmp/RtmpGY5553
$ pwd
/tmp/RtmpGY5553


According to ?dQuote:

By default, sQuote and dQuote provide undirectional ASCII quotation
style. In a UTF-8 locale (see l10n_info), the Unicode directional quotes
are used.

The See Also points to shQuote for quoting OS commands.


HTH,

Marc

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Re: [R] Hmisc latex function

2005-10-12 Thread Charles Dupont

Peter Dalgaard wrote:

Charles Dupont [EMAIL PROTECTED] writes:



H,  It works for me.  Interesting.

It almost looks like the temp dir is not being created, but thats not 
possible because R does that.  It might be a Unicode issue with you 
system shell.  Can you run this statement in R



It's a Unicode issue alright. dQuote is intended for textual output,
and in UTF-8 locales it will use Unicode codepoints 0x201c and 0x201d,
which the shell is not expected to make head or tails of.

The help page would have told you, and pointed you to shQuote() as
well...
 




Well There be the problem.

First I have heard about shQuote.  When I last looked at the help file 
it didn't have the shQuote entry.


For a temporary fix source the attached file after loading the Hmisc 
library.  I will fix this in source for the next version.



--
Charles Dupont  Computer System Analyst School of Medicine
Department of Biostatistics Vanderbilt University
##!!WRONG ARG x in !.SV4. def latex generic!
##Changed x to object inside latex() for !.SV4. (Thanks David Lovell)

##Thanks to David R. Lovell [EMAIL PROTECTED] CSIRO
##for scientific=8Feb2000

first.word - function(x, i=1, expr=substitute(x))
{
  words -
if(!missing(x))
  as.character(x)[1]
else
  as.character(unlist(expr))[1]
  
  ## Added !missing(x) as.char(x) 25May01
  ##first.letters - substring(words, 1, 1)
  ##word.selector - (match(first.letters, c(letters,LETTERS,.), 0)  0)
  ##words - words[word.selector][i]
  ##if(!under.unix) {
  ##  words - sedit(words,'.','')
  ##  words - substring(words,1,8)
  ##}
  ## 8Nov00 FEH:
  
  if(i  1)
stop('i  1 not implemented')
  
  chars - substring(words, 1:nchar(words), 1:nchar(words))
  legal.chars - c(letters,LETTERS,'.',
   '0','1','2','3','4','5','6','7','8','9')
  non.legal.chars - (1:length(chars))[chars %nin% legal.chars]
  if(!any(non.legal.chars))
return(words)
  
  if(non.legal.chars[1]==1)
return(character(0))
  
  substring(words, 1, non.legal.chars[1]-1)
}


##1. if x is a data.frame, then do each component separately.
##2. if x is a matrix, but not a data.frame, make it a data.frame
##   with individual components for the columns.
##3. if a component x$x is a matrix, then do all columns the same.
##4. Use right justify by default for numeric columns.
##5. Use left justify for non-numeric columns.

## The following are made complicated by matrix components of data.frames:
##6. vector cdec must have number of items equal to number of columns
##   of input x.
##7. matrix dec must have number of columns equal to number of columns
##   of input x.
##8. scalar dec is expanded to a vector cdec with number of items equal
##   to number of columns of input x.
##9. vector rdec must have number of items equal to number of rows of input x.
##   rdec is expanded to matrix dec.
##10. col.just must have number of columns equal to number of columns
##of output cx.

## Value:
## character matrix with character images of properly rounded x.
## matrix components of input x are now just sets of columns of character 
matrix.
## attr(,col.just) repeats input col.just when provided.
##  Otherwise, recommended justification for columns of output.
##  Default is l for characters and factors, r for numeric.
##  When dcolumn==T, numerics will have ..


## FEH 21May96 - changed default for numeric.dollar to cdot
## FEH  5Jun96 - re-written to not rely on as.data.frame,
##   converted data frames to matrices the slow way
##   added matrix.sep 
## 12Aug99 - allowed # decimal places=NA (no rounding, just use format())
##27May02 - added booktabs FEH
## 13Dec02 - added ctable   FEH
## arguments included check.names=TRUE 23jan03

format.df - function(x,
  digits, dec=NULL, rdec=NULL, cdec=NULL,
  numeric.dollar=cdot, na.blank=FALSE,
  na.dot=FALSE, blank.dot=FALSE, col.just=NULL,
  cdot=FALSE, dcolumn=FALSE, matrix.sep=' ', 
scientific=c(-4,4), ...)
{
  if(cdot  dcolumn)
stop('cannot have both cdot=T and dcolumn=T')
  
  if(missing(digits))
digits - NULL
  
  if((!length(digits))+(!length(dec))+(!length(rdec))+(!length(cdec))  3)
stop('only one of digits, dec, rdec, cdec may be given')
  
  ##if(length(digits)) .Options$digits6Aug00 what was that?
  
  if(length(digits)) {
oldopt - options(digits=digits)
on.exit(options(oldopt))
  }

  ## For now nsmall and scientific are ignored in R  25May01
  formt -
if(!.R.)
  format.default
else function(x, decimal.mark='.', nsmall=0, scientific=c(-4,4))
{
  x - format(x)
  if(decimal.mark!='.')
x - gsub('\\.',decimal.mark,x)
  
  x
}
  
  dot -
if(cdot)
  (if(.R.)
 'cdotp!'
   else
 '\\cdotp\\!')
else
  '.'

  if(is.data.frame(x))
x - unclass(x)
  
  xtype 

[R] Hmisc latex function

2005-10-11 Thread Rick Bilonick
I'm using R 2.2.0 on an up-to-date version of Fedora Core 4 with the
latest version of Hmisc. When I run an example from the latex function I
get the following:

 x - matrix(1:6, nrow=2, dimnames=list(c('a','b'),c('c','d','enLine
2')))
 x
  c d enLine 2
a 1 35
b 2 46
 latex(x)   # creates x.tex in working directory
sh: line 0: cd: “/tmp/Rtmpl10983”: No such file or directory
This is pdfeTeX, Version 3.141592-1.21a-2.2 (Web2C 7.5.4)
entering extended mode
! I can't find file `“/tmp/Rtmpl10983/file643c9869”'.
* “/tmp/Rtmpl10983/file643c9869”

Please type another input file name: q
(/usr/share/texmf/tex/latex/tools/q.tex
LaTeX2e 2003/12/01
Babel v3.8d and hyphenation patterns for american, french, german,
ngerman, b
ahasa, basque, bulgarian, catalan, croatian, czech, danish, dutch,
esperanto, e
stonian, finnish, greek, icelandic, irish, italian, latin, magyar,
norsk, polis
h, portuges, romanian, russian, serbian, slovak, slovene, spanish,
swedish, tur
kish, ukrainian, nohyphenation, loaded.
File ignored
xdvi-motif.bin: Fatal error: /tmp/Rtmpl10983/file643c9869.dvi: No such
file.


How can I fix this?

Rick B.

__
R-help@stat.math.ethz.ch mailing list
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Re: [R] Hmisc latex function

2005-10-11 Thread Marc Schwartz (via MN)
On Tue, 2005-10-11 at 10:01 -0400, Rick Bilonick wrote:
 I'm using R 2.2.0 on an up-to-date version of Fedora Core 4 with the
 latest version of Hmisc. When I run an example from the latex function I
 get the following:
 
  x - matrix(1:6, nrow=2, dimnames=list(c('a','b'),c('c','d','enLine
 2')))
  x
   c d enLine 2
 a 1 35
 b 2 46
  latex(x)   # creates x.tex in working directory
 sh: line 0: cd: “/tmp/Rtmpl10983”: No such file or directory
 This is pdfeTeX, Version 3.141592-1.21a-2.2 (Web2C 7.5.4)
 entering extended mode
 ! I can't find file `“/tmp/Rtmpl10983/file643c9869”'.
 * “/tmp/Rtmpl10983/file643c9869”
 
 Please type another input file name: q
 (/usr/share/texmf/tex/latex/tools/q.tex
 LaTeX2e 2003/12/01
 Babel v3.8d and hyphenation patterns for american, french, german,
 ngerman, b
 ahasa, basque, bulgarian, catalan, croatian, czech, danish, dutch,
 esperanto, e
 stonian, finnish, greek, icelandic, irish, italian, latin, magyar,
 norsk, polis
 h, portuges, romanian, russian, serbian, slovak, slovene, spanish,
 swedish, tur
 kish, ukrainian, nohyphenation, loaded.
 File ignored
 xdvi-motif.bin: Fatal error: /tmp/Rtmpl10983/file643c9869.dvi: No such
 file.
 
 
 How can I fix this?
 
 Rick B.

I get the same results, also on FC4 with R 2.2.0.

I am cc:ing Frank here for his input, but a quick review of the code and
created files suggests that there may be conflict between the locations
of some of the resultant files during the latex system call. Some files
appear in a temporary R directory, while others appear in the current R
working directory.

For example, if I enter the full filename:
 
  /tmp/RtmpC12100/file643c9869.tex

at the latex prompt, I get:

 latex(x)
sh: line 0: cd: “/tmp/RtmpC12100”: No such file or directory
This is pdfeTeX, Version 3.141592-1.21a-2.2 (Web2C 7.5.4)
entering extended mode
! I can't find file `“/tmp/RtmpC12100/file643c9869”'.
* “/tmp/RtmpC12100/file643c9869”

Please type another input file name: *** loading the extensions
datasource
/tmp/RtmpC12100/file643c9869.tex
(/tmp/RtmpC12100/file643c9869.tex
LaTeX2e 2003/12/01
Babel v3.8d and hyphenation patterns for american, french, german,
ngerman, b
ahasa, basque, bulgarian, catalan, croatian, czech, danish, dutch,
esperanto, e
stonian, finnish, greek, icelandic, irish, italian, latin, magyar,
norsk, polis
h, portuges, romanian, russian, serbian, slovak, slovene, spanish,
swedish, tur
kish, ukrainian, nohyphenation, loaded.
(/usr/share/texmf/tex/latex/base/report.cls
Document Class: report 2004/02/16 v1.4f Standard LaTeX document class
(/usr/share/texmf/tex/latex/base/size10.clo))
(/usr/share/texmf/tex/latex/geometry/geometry.sty
(/usr/share/texmf/tex/latex/graphics/keyval.sty)
(/usr/share/texmf/tex/latex/geometry/geometry.cfg))
No file file643c9869.aux.
[1] (./file643c9869.aux) )
Output written on file643c9869.dvi (1 page, 368 bytes).
Transcript written on file643c9869.log.
xdvi-motif.bin: Fatal error: /tmp/RtmpC12100/file643c9869.dvi: No such
file.


The temporary .tex file is present, but the .dvi, .aux and .log files
are created in the current working R directory.

HTH,

Marc Schwartz

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[R] Hmisc latex

2005-03-18 Thread Michaell Taylor


Hmisc includes a latex function which typesets objects in latex.  A
great time saver.

I am using it to create a large number of tables in a loop in conjuction
with prettyNum to place '000s separators in the numbers (i.e. 1,000,000
not 100).  This converts the numbers to strings.  The Hmisc/latex
default is to left justify characters - which doesn't work in this case.

Hmisc/latex seems to have lots of options, but not one that I was
expecting.  I am having trouble specifying column justification.  I can
specify justification for column labels, column label groups, row
labels, even table justification --- but not the justification of the
data within the table. 

I am convinced that I am missing something. Am I? or this just a yet to
be coded feature.  Thanks in advance.


Michaell

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