Re: [R] R/S-related projects on Sourceforge? Trove Categorization
Hi, This are the project which I have extracted from all your mails. 1. http://sourceforge.net/projects/rpgsql/ R PostgreSQL Interface 2. http://sourceforge.net/projects/r-spatial/ R package for spatial data classes 3. http://sourceforge.net/projects/rpy/ RPy (R from Python) 4. http://sourceforge.net/projects/ep-sf/ Expression Profiler 5. http://sourceforge.net/projects/fsap fish stock assessment for R 6. http://sourceforge.net/projects/flr/ R packages for use in fisheries modelling 7. https://sourceforge.net/projects/runit/ R Unit Test Framework 8. http://sourceforge.net/projects/ep-sf/ Expression Profiler 9. http://sourceforge.net/projects/r-asp/ Analysis of Spatial Data in R 10. http://sourceforge.net/projects/r4proteomics/ R Packages for proteomics 11. http://sourceforge.net/projects/rdbi/ R Database Interface 12. http://sourceforge.net/projects/nlmeode/ R package combining nlme and odesolve 13. http://sourceforge.net/projects/rarcinfo/ RArcInfo 14. http://sourceforge.net/projects/rgdal GDAL Package for R 15. http://sourceforge.net/projects/gretl/ GNU Regression, Econometrics and Time-series Library 16. ... Sorry if I have missed any. But it is surely more than five. Thanks all of you for your numerous response and also for some more general thoughts concerning *collaboratory* development using source code repositories: https://stat.ethz.ch/pipermail/r-devel/2004-November/031398.html. If I see how R is evolving I believe that this ideas will be realized soon. Especially that there are already repositories covering some of the functionality and dedicated to R -- Bioconductor with a svn archive. Unfortunately, as I was told by Geff Gentry the costs of administering the svn, cvs servers are high, hence the number of developers must be limited. Also CRAN has some of the functionality but the svn or cvs support is missing. Luckily hosting the sources on e.g. sourceforge and the builds on CRAN or Bioconductor gives already some of the essential functionality. Therefore at this place big thanks to the Bioconductor, CRAN and sourceforge people. /E __ [EMAIL PROTECTED] mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide! http://www.R-project.org/posting-guide.html
Re: [R] R/S-related projects on Sourceforge? Trove Categorization - GDAL
Dirk == Dirk Eddelbuettel [EMAIL PROTECTED] on Wed, 17 Nov 2004 12:25:16 -0600 writes: Dirk On Wed, Nov 17, 2004 at 11:52:57AM -0500, Dirk [EMAIL PROTECTED] wrote: Gretl, RPad and RMetrics, plus Ernesto's FLR and fsap make five. Dirk Isn't RMetrics at rmetrics.org at the ETH in Zuerich, CH? that's definitely correct. There might have been oral plans to change the development process, but I'm not even sure about that. Martin Maechler (at ETH, but not connected to Rmetrics in any ways). __ [EMAIL PROTECTED] mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide! http://www.R-project.org/posting-guide.html
[R] R/S-related projects on Sourceforge? Trove Categorization
Hi R-Users and Developers, Several months ago I made a request on Sourceforge to add the R/S - programming language to the _Trove_ categorization. (The Trove is a means to convey basic metainformation about your project.) Today I got the following response of one of the sourceforge admins. SNIP SourceForge.net will consider the inclusion of a programming language within the Trove system when we host at least 5 projects based on that language. Please advise: Do you know of 5 projects hosted on SourceForge.net based on this language? SNIP If anyone of you knew about R-packages, or projects using the R/S programming language, which are hosted on sourceforge, please reply to this thread. I hope that your answers will enable me to give more then 5 examples of R projects hosted on Sourceforge. Yours Eryk Ps. The ID of my original feature request on Sourceforge is 967697. https://sourceforge.net/tracker/?func=detailatid=350001aid=967697group_id=1 -- Dipl. bio-chem. Witold Eryk Wolski MPI-Moleculare Genetic Ihnestrasse 63-73 14195 Berlin tel: 0049-30-83875219 __(_ http://www.molgen.mpg.de/~wolski \__/'v' http://r4proteomics.sourceforge.net||/ \ mail: [EMAIL PROTECTED]^^ m m [EMAIL PROTECTED] __ [EMAIL PROTECTED] mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide! http://www.R-project.org/posting-guide.html
Re: [R] R/S-related projects on Sourceforge? Trove Categorization
Hi, I have 2 _small_ projects hosted in sf.net that use R FLR :: R for fisheries science (http://flr.sf.net) fsap: fish stock assessment for R (http://sf.net/projects/fsap) The first one is getting some hip and the second is dying ... Hope it helps. Regards EJ On Wed, 2004-11-17 at 09:09, Witold Eryk Wolski wrote: Hi R-Users and Developers, Several months ago I made a request on Sourceforge to add the R/S - programming language to the _Trove_ categorization. (The Trove is a means to convey basic metainformation about your project.) Today I got the following response of one of the sourceforge admins. SNIP SourceForge.net will consider the inclusion of a programming language within the Trove system when we host at least 5 projects based on that language. Please advise: Do you know of 5 projects hosted on SourceForge.net based on this language? SNIP If anyone of you knew about R-packages, or projects using the R/S programming language, which are hosted on sourceforge, please reply to this thread. I hope that your answers will enable me to give more then 5 examples of R projects hosted on Sourceforge. Yours Eryk Ps. The ID of my original feature request on Sourceforge is 967697. https://sourceforge.net/tracker/?func=detailatid=350001aid=967697group_id=1 __ [EMAIL PROTECTED] mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide! http://www.R-project.org/posting-guide.html
RE: [R] R/S-related projects on Sourceforge? Trove Categorization
SNIP SourceForge.net will consider the inclusion of a programming language within the Trove system when we host at least 5 projects based on that language. Please advise: Do you know of 5 projects hosted on SourceForge.net based on this language? SNIP Gretl, RPad and RMetrics, plus Ernesto's FLR and fsap make five. Gretl Allin Cottrell, USA Gnu Regression, Econometrics and Time-series Library Gretl is hosted on SourceForge. http://gretl.sourceforge.net/ Gretl is not written in R, but interfaces to R. http://gretl.sourceforge.net/gretl_and_R.html gretl ... is designed as a very user-friendly econometrics package. While it is also reasonably sophisticated, it lacks some of the specialized statistical methods that a working econometrician might desire.As a way around this limitation, gretl offers an interface to the comprehensive free-software statistical package, GNU R. Both RPAd and RMetrics are open-source projects using (and acknowledging using) R. As far as I know, neither is listed on SourceForge. RPadEPRI (Electric Power Research Institute), USA http://www.Rpad.org/Rpad/ Rpad is an interactive, web-based analysis program. Rpad pages are interactive workbook-type sheets based on R, an open-source implementation of the S language. Rpad is an analysis package, a web-page designer, and a gui designer all wrapped in one. Rpad makes it easy to develop powerful data analysis applications that can be shared with others (most likely on an intranet). The user doesn't have to install anything--everything's done through a browser. RMetricsDiethelm Wuertz, ETH Zurich, Switzerland http://www.itp.phys.ethz.ch/econophysics/R/ Rmetrics is the premier open source solution for financial market analysis and valuation of financial instruments. With hundreds of functions build on modern and powerful methods Rmetrics combines explorative data analysis and statistical modeling with object oriented rapid prototyping. Rmetrics is embedded in R, My impression is that many projects on SourceForge have links to home pages hosted on other sites -- so I suppose if the project authors are willing -- they could be cross listed on SourceForge. Gretl, RPad and RMetrics, plus Ernesto's FLR and fsap make five. On the other hand, SourceForge's criteria for inclusion appears to be very arbitrary. Objective criteria that would be more relevant to R include: - R has several active mailing lists (archived for verification) - The R Project is archived on CRAN (Comprehensive R Archive Network) which has more than 20 mirrors on 6 continents: Africa Asia Australia Europe North America South America - More than a dozen books have been published with either R or S mentioned in the title (R is an open-source implementation of S). For example, Introductory Statistics with R is available from major booksellers including Amazon.com, BarnesandNoble.com and even Wal-mart.com! Subjective criteria for inclusion on SourceForge - R is an implementation of S a language developed at Bell Labs -- the organization that developed the C programming language and the Unix operating system. Open source implementations of C include the GNU Complier Collection (GCC) and open source implementations of Unix include GNU Linux. So why not include, the open source implementation of S, GNU R? - R is respected in the statistical community. There are awards and articles that could be cited. A personal story -- in the early 1990s I attended an American Statistical Association meeting in San Francisco. I saw then that the topnotch statisticians, people like Frank Harrell -- whose short course on Regression I attended, were maxing out SAS and switching to S. I heard about StatLib at Carnegie Mellon and contributed code. At the time, the institution I was working for was committed to SAS and SPSS and would not have been open to spending more on S. But, years latter I was delighted to learn that there was an open source implementation S, R and that it was available at StatLib, which now is a mirror for the worldwide CRAN mirror sites. On Wed, 2004-11-17 at 09:09, Witold Eryk Wolski wrote: Hi R-Users and Developers, Several months ago I made a request on Sourceforge to add the R/S - programming language to the _Trove_ categorization. (The Trove is a means to convey basic metainformation about your project.) Today I got the following response of one of the sourceforge admins. SNIP SourceForge.net will consider the inclusion of a programming language within the Trove system when we host at least 5 projects based on that language. Please advise: Do you know of 5 projects hosted on SourceForge.net based on this language? SNIP If anyone of you knew about R-packages, or projects using the R/S programming language, which are hosted on sourceforge, please reply to this thread. I hope that your answers will enable me to give more then 5 examples of R projects hosted on
RE: [R] R/S-related projects on Sourceforge? Trove Categorization - GDAL
GDAL Package for R http://sourceforge.net/projects/rgdal The R GDAL package is an interface for accessing Frank Warmerdam's Geographic Data Abstraction Library from within R. GDAL is capable of reading and writing a wide range of geographic data formats including ESRI grid format and geotiff. On Wed, 2004-11-17 at 09:09, Witold Eryk Wolski wrote: SNIP SourceForge.net will consider the inclusion of a programming language within the Trove system when we host at least 5 projects based on that language. Please advise: Do you know of 5 projects hosted on SourceForge.net based on this language? SNIP Gretl, RPad and RMetrics, plus Ernesto's FLR and fsap make five. GDAL Package for R, makes six. Jim Callahan Management, Budget Accounting City of Orlando (407) 246-3039 office (407) 234-3744 cell phone [[alternative HTML version deleted]] __ [EMAIL PROTECTED] mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide! http://www.R-project.org/posting-guide.html
RE: [R] R/S-related projects on Sourceforge? Trove Categorization - GDAL
Just a small correction. FLR and FSAp are not _my_ packages :-) For FLR there's a team working on its development. Regards EJ ps: my fault anyway, the first message was not clear. On Wed, 2004-11-17 at 16:52, [EMAIL PROTECTED] wrote: GDAL Package for R http://sourceforge.net/projects/rgdal The R GDAL package is an interface for accessing Frank Warmerdam's Geographic Data Abstraction Library from within R. GDAL is capable of reading and writing a wide range of geographic data formats including ESRI grid format and geotiff. On Wed, 2004-11-17 at 09:09, Witold Eryk Wolski wrote: SNIP SourceForge.net will consider the inclusion of a programming language within the Trove system when we host at least 5 projects based on that language. Please advise: Do you know of 5 projects hosted on SourceForge.net based on this language? SNIP Gretl, RPad and RMetrics, plus Ernesto's FLR and fsap make five. GDAL Package for R, makes six. Jim Callahan Management, Budget Accounting City of Orlando (407) 246-3039 office (407) 234-3744 cell phone __ [EMAIL PROTECTED] mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide! http://www.R-project.org/posting-guide.html
Re: [R] R/S-related projects on Sourceforge? Trove Categorization
[EMAIL PROTECTED] wrote: SNIP SourceForge.net will consider the inclusion of a programming language within the Trove system when we host at least 5 projects based on that language. Please advise: Do you know of 5 projects hosted on SourceForge.net based on this language? SNIP Gretl, RPad and RMetrics, plus Ernesto's FLR and fsap make five. Then you can also add nlmeODE: http://nlmeode.sourceforge.net/ Gretl Allin Cottrell, USA Gnu Regression, Econometrics and Time-series Library Gretl is hosted on SourceForge. http://gretl.sourceforge.net/ Gretl is not written in R, but interfaces to R. http://gretl.sourceforge.net/gretl_and_R.html gretl ... is designed as a very user-friendly econometrics package. While it is also reasonably sophisticated, it lacks some of the specialized statistical methods that a working econometrician might desire.As a way around this limitation, gretl offers an interface to the comprehensive free-software statistical package, GNU R. Both RPAd and RMetrics are open-source projects using (and acknowledging using) R. As far as I know, neither is listed on SourceForge. RPadEPRI (Electric Power Research Institute), USA http://www.Rpad.org/Rpad/ Rpad is an interactive, web-based analysis program. Rpad pages are interactive workbook-type sheets based on R, an open-source implementation of the S language. Rpad is an analysis package, a web-page designer, and a gui designer all wrapped in one. Rpad makes it easy to develop powerful data analysis applications that can be shared with others (most likely on an intranet). The user doesn't have to install anything--everything's done through a browser. RMetricsDiethelm Wuertz, ETH Zurich, Switzerland http://www.itp.phys.ethz.ch/econophysics/R/ Rmetrics is the premier open source solution for financial market analysis and valuation of financial instruments. With hundreds of functions build on modern and powerful methods Rmetrics combines explorative data analysis and statistical modeling with object oriented rapid prototyping. Rmetrics is embedded in R, My impression is that many projects on SourceForge have links to home pages hosted on other sites -- so I suppose if the project authors are willing -- they could be cross listed on SourceForge. Gretl, RPad and RMetrics, plus Ernesto's FLR and fsap make five. On the other hand, SourceForge's criteria for inclusion appears to be very arbitrary. Objective criteria that would be more relevant to R include: - R has several active mailing lists (archived for verification) - The R Project is archived on CRAN (Comprehensive R Archive Network) which has more than 20 mirrors on 6 continents: Africa Asia Australia Europe North America South America - More than a dozen books have been published with either R or S mentioned in the title (R is an open-source implementation of S). For example, Introductory Statistics with R is available from major booksellers including Amazon.com, BarnesandNoble.com and even Wal-mart.com! Subjective criteria for inclusion on SourceForge - R is an implementation of S a language developed at Bell Labs -- the organization that developed the C programming language and the Unix operating system. Open source implementations of C include the GNU Complier Collection (GCC) and open source implementations of Unix include GNU Linux. So why not include, the open source implementation of S, GNU R? - R is respected in the statistical community. There are awards and articles that could be cited. A personal story -- in the early 1990s I attended an American Statistical Association meeting in San Francisco. I saw then that the topnotch statisticians, people like Frank Harrell -- whose short course on Regression I attended, were maxing out SAS and switching to S. I heard about StatLib at Carnegie Mellon and contributed code. At the time, the institution I was working for was committed to SAS and SPSS and would not have been open to spending more on S. But, years latter I was delighted to learn that there was an open source implementation S, R and that it was available at StatLib, which now is a mirror for the worldwide CRAN mirror sites. On Wed, 2004-11-17 at 09:09, Witold Eryk Wolski wrote: Hi R-Users and Developers, Several months ago I made a request on Sourceforge to add the R/S - programming language to the _Trove_ categorization. (The Trove is a means to convey basic metainformation about your project.) Today I got the following response of one of the sourceforge admins. SNIP SourceForge.net will consider the inclusion of a programming language within the Trove system when we host at least 5 projects based on that language. Please advise: Do you know of 5 projects hosted on SourceForge.net based on this language? SNIP If anyone of you knew about R-packages, or projects using the R/S programming language, which are hosted on sourceforge, please reply to this thread. I hope that your answers
Re: [R] R/S-related projects on Sourceforge? Trove Categorization - GDAL
On Wed, Nov 17, 2004 at 11:52:57AM -0500, [EMAIL PROTECTED] wrote: Gretl, RPad and RMetrics, plus Ernesto's FLR and fsap make five. Isn't RMetrics at rmetrics.org at the ETH in Zuerich, CH? GDAL Package for R, makes six. Add RPy (rpy.sf.net) to make seven (or six, if remove RMetrics). Gretl is a tad marginal, though. Dirk -- If your hair is standing up, then you are in extreme danger. -- http://www.usafa.af.mil/dfp/cockpit-phys/fp1ex3.htm __ [EMAIL PROTECTED] mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide! http://www.R-project.org/posting-guide.html
Re: [R] R/S-related projects on Sourceforge? Trove Categorization -GDAL
On Wed, 17 Nov 2004, Dirk Eddelbuettel wrote: On Wed, Nov 17, 2004 at 11:52:57AM -0500, [EMAIL PROTECTED] wrote: Gretl, RPad and RMetrics, plus Ernesto's FLR and fsap make five. Isn't RMetrics at rmetrics.org at the ETH in Zuerich, CH? GDAL Package for R, makes six. Add RPy (rpy.sf.net) to make seven (or six, if remove RMetrics). Gretl is a tad marginal, though. I'm losing count, rgdal was already mentioned, but I haven't seen: r-spatial: An R-package for dealing with spatial data in S (R or S-PLUS); this package should provide classes and methods for spatial data (points, lines, polygons, grids) that can be relied upon by other packages that use spatial data. rarcinfo: RArcInfo is a package for R (http://www.r-project.org) to import data from binary Arc/Info V7.X coverages and E00 files . This will allow R users to used it as a primary GIS tool. Roger Dirk -- Roger Bivand Economic Geography Section, Department of Economics, Norwegian School of Economics and Business Administration, Breiviksveien 40, N-5045 Bergen, Norway. voice: +47 55 95 93 55; fax +47 55 95 93 93 e-mail: [EMAIL PROTECTED] __ [EMAIL PROTECTED] mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide! http://www.R-project.org/posting-guide.html
