Re: [R] Unbundling gregmisc (was: loading gap package)

2005-05-04 Thread apjaworski





I have one comment, although it is a little off topic.

I have the gregmisc package installed (R-2.0.1 on Win2000).  Whenever I use
the help.search function it comes back with the following warning:

Warning message:
no Rd contents for package 'gregmisc' in 'C:/local/R/rw210/library' in:
help.search("bundle")

Apparently, the help.search function looks for the CONTENTS file in the
.../library/gregmisc directory.  I created an empty one and the warning
went away.  I know it is purely cosmetic, but if the gregmisc bundle is
kept intact, and I think it should, I would suggest adding the empty
CONTENTS file to its distribution.

Perhaps there is a better way of handling this.  For example, VR is a
bundle but it does not create its VR directory in .../library.

Andy

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Andy Jaworski
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 "Warnes, Gregory  
 R"
   "'Constantinos Antoniou'"   
 Sent by:  <[EMAIL PROTECTED]>, Prof Brian Ripley 
 [EMAIL PROTECTED] <[EMAIL PROTECTED]> 
 at.math.ethz.chcc 
   R-help@stat.math.ethz.ch, Uwe   
   Ligges  
 05/04/2005 09:56  <[EMAIL PROTECTED]>  
 AM                Subject 
   [R] Unbundling gregmisc (was:   
   loading gap package)
   
   
   
   
   
   




Let me redirect the topic a bit.  I've been considering unbundling
gregmisc.
The pro would be that people would find the component packages (i.e. gdata)
more easily.  The con is that the packages have a number of
interdependencies, so you pretty much will need to get most of them anyway.

As the latest gregmisc bundle contains a gregmisc package that is just a
stub that depends on and loads the individual packages, there would still
be
a gregmisc object.

Comments?

-Greg

> -Original Message-
> From: [EMAIL PROTECTED]
> [mailto:[EMAIL PROTECTED] Behalf Of Constantinos
> Antoniou
> Sent: Wednesday, May 04, 2005 6:36 AM
> To: Prof Brian Ripley
> Cc: R-help@stat.math.ethz.ch; Uwe Ligges
> Subject: Re: [R] loading gap package
>
>
> =-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-
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> On 4 ÎÎÏ 2005, at 12:06 ÂÂ, Prof Brian Ripley wrote:
>
> > On Wed, 4 May 2005, Constantinos Antoniou wrote:
> >
> >>
> >> On 4 ÅÂÃ 2005, at 11:35 ÃÂ, Uwe Ligges wrote:
> >>
> >>> Eduwin Pakpahan wrote:
> >>>> Dear R users, I did install R. 2.0.1, and try to load "gap"
>
> >>>> package. However, below is the message shown when I did load it.
>
> >>>> Can anybody
> >>>> please let me know my mistakes?
> >>>> 
> >>>>> library()
> >>>>> library(gap)
> >>>> Loading required package: MASS Loading required package: genetics
>
> >>>> Loading required package: combinat Loading required
> package: gdata
>
> >>>> Error: package 'gdata' could not be loaded
> >>>> In addition: Warning message: There is no package called 'gdata'
>
> >>>> in: library(pkg, character.only =
> >>>> TRUE, logical = TRUE, lib.loc = lib.loc

Re: [R] Unbundling gregmisc (was: loading gap package)

2005-05-04 Thread Duncan Murdoch
Warnes, Gregory R wrote:
Let me redirect the topic a bit.  I've been considering unbundling gregmisc.
The pro would be that people would find the component packages (i.e. gdata)
more easily.  The con is that the packages have a number of
interdependencies, so you pretty much will need to get most of them anyway.
As the latest gregmisc bundle contains a gregmisc package that is just a
stub that depends on and loads the individual packages, there would still be
a gregmisc object.
Comments?
Currently R can follow dependencies when you install a package from CRAN 
(and this is the default in Windows, not sure about other platforms), so 
I'd say this would be a good thing to do.  I don't know your revision 
history on the components, but I'd guess some change more often than 
others, so there'll be no need to update all of them every time one of 
them changes.

Duncan Murdoch
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[R] Unbundling gregmisc (was: loading gap package)

2005-05-04 Thread Warnes, Gregory R
Let me redirect the topic a bit.  I've been considering unbundling gregmisc.
The pro would be that people would find the component packages (i.e. gdata)
more easily.  The con is that the packages have a number of
interdependencies, so you pretty much will need to get most of them anyway.

As the latest gregmisc bundle contains a gregmisc package that is just a
stub that depends on and loads the individual packages, there would still be
a gregmisc object.

Comments?

-Greg

> -Original Message-
> From: [EMAIL PROTECTED]
> [mailto:[EMAIL PROTECTED] Behalf Of Constantinos
> Antoniou
> Sent: Wednesday, May 04, 2005 6:36 AM
> To: Prof Brian Ripley
> Cc: R-help@stat.math.ethz.ch; Uwe Ligges
> Subject: Re: [R] loading gap package
> 
> 
> =-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-
> =-=-=-=-=
> !!! IMPORTANT NOTICE !!!
> This email was addressed to you from the Internet using a 
> legacy E-Mail Domain address.
> 
> 
> This email domain will no longer be in service on the 
> Internet after 15 July 2005.
> 
> If this is legitimate business email, please inform the 
> sender to address all future correspondence to your 
> @pfizer.com address.
> 
> The original text of this email appears below this notice.
> =-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-
> =-=-=-=-=
> 
> 
> On 4 ÎÎÏ 2005, at 12:06 ÂÂ, Prof Brian Ripley wrote:
> 
> > On Wed, 4 May 2005, Constantinos Antoniou wrote:
> >
> >>
> >> On 4 ÅÂÃ 2005, at 11:35 ÃÂ, Uwe Ligges wrote:
> >>
> >>> Eduwin Pakpahan wrote:
>  Dear R users, I did install R. 2.0.1, and try to load "gap"
> 
>  package. However, below is the message shown when I did load it.
> 
>  Can anybody
>  please let me know my mistakes?
>  
> > library()
> > library(gap)
>  Loading required package: MASS Loading required package: genetics
> 
>  Loading required package: combinat Loading required 
> package: gdata
> 
>  Error: package 'gdata' could not be loaded
>  In addition: Warning message: There is no package called 'gdata'
> 
>  in: library(pkg, character.only =
>  TRUE, logical = TRUE, lib.loc = lib.loc)
>  
> >>> Let me read the error message for you:
> >>> "There is no package 'gdata'" simply means the package is not
> 
> >>> there...
> >>> So what about installing it?
> >>> Hint: it is part of the package bundle "gregmisc".
> >>
> >> I have a similar problem with R 2.1.0 on Mac OSX 10.3.9.
> >>
> >>> library(gregmisc)
> >> Loading required package: gdata
> >> Error: package 'gdata' could not be loaded
> >> In addition: Warning message:
> >> there is no package called 'gdata' in: library(pkg, 
> character.only =
> 
> >> TRUE, logical = TRUE, lib.loc = lib.loc)
> >>
> >> At first I tried getting this gdata from somewhere else, 
> but I could
> 
> >> not find it (evidence indicated that it is part of the 
> gregmisc, as I
> 
> >> suspected originally... You email confirms this...)
> >>
> >> (For the record, my goal is to get read.xls, which is part (?) of
> 
> >> gdata)
> >
> > The current version of gregmisc is 2.0.6.  That does contain gdata. 
> 
> > It looks to me as if the MacOS X binary is broken (2kb) so you will
> 
> > need to install from the sources.
> >
> 
> Thank you. I had the current  version (binary). Reinstalling from
> 
> source fixed the issue
> 
> Costas
> 
> > I think we have been here before: it seems the MacOS X binary
> 
> > packaging does not work for bundles.
> >
> > --
> 
> > Brian D. Ripley,  [EMAIL PROTECTED]
> > Professor of Applied Statistics,  http://www.stats.ox.ac.uk/~ripley/
> > University of Oxford, Tel:  +44 1865 272861 (self)
> > 1 South Parks Road, +44 1865 272866 (PA)
> > Oxford OX1 3TG, UKFax:  +44 1865 272595
> 
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