[R] Using permax with Data Frame Containing Missing Values

2004-07-07 Thread Brian Lane
I'm new to this site so I hope this isn't too naive a problem. I'm trying 
to use the permax function with a data frame containing gene expression 
measurements taken from 79 microarray experiments with 3000 genes per 
array. The data contains missing values and every time I use permax with 
the data frame I get the error:

NA/NaN/Inf in foreign function call (arg 1)
Could anyone suggest how I might get round this problem?
Regards,
Brian Lane
Dept of Haematology
University of Liverpool
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Re: [R] Using permax with Data Frame Containing Missing Values

2004-07-07 Thread Robert Gentleman
There is currently no handling of NAs in permax. Your only simple
option is to drop those rows with NA's in them, or to perform some
sort of imputation.

I will mention it to the package's author, 
 Robert

On Wed, Jul 07, 2004 at 12:47:05PM +0100, Brian Lane wrote:
 I'm new to this site so I hope this isn't too naive a problem. I'm trying 
 to use the permax function with a data frame containing gene expression 
 measurements taken from 79 microarray experiments with 3000 genes per 
 array. The data contains missing values and every time I use permax with 
 the data frame I get the error:
 
 NA/NaN/Inf in foreign function call (arg 1)
 
 Could anyone suggest how I might get round this problem?
 
 Regards,
 Brian Lane
 Dept of Haematology
 University of Liverpool
 
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 https://www.stat.math.ethz.ch/mailman/listinfo/r-help
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