[R] reading SAS data files

2005-09-26 Thread Dean Sonneborn
I am attempting to read in a SAS 9.1 data file. After starting R I 
change to the directory containing the sas data file and use the dir 
command to confirm that it is there. Then I run the following R-code:

library(foreign)

sashome - /Program Files/SAS/SAS 9.1

test-read.ssd(file.path(sashome), pcb,

 sascmd = file.path(sashome, sas.exe))


but R responds with:

SAS failed.  SAS program at 
C:\DOCUME~1\DSONNE~1\LOCALS~1\Temp\Rtmp3540\file16169.sas 
The log file will be file16169.log in the current directory
Warning message:
SAS return code was 2 in: read.ssd(file.path(sashome), pcb, sascmd = 
file.path(sashome, 

 
the SAS log file contain this:

NOTE: Copyright (c) 2002-2003 by SAS Institute Inc., Cary, NC, USA. 
NOTE: SAS (r) 9.1 (TS1M3)
  Licensed to UNIV OF CA/DAVIS, Site 0029107010.
NOTE: This session is executing on the XP_PRO  platform.



NOTE: SAS initialization used:
  real time   0.13 seconds
  cpu time0.18 seconds
  
1  libname src2rd '/Program Files/SAS/SAS 9.1';
NOTE: Libref SRC2RD was successfully assigned as follows: 
  Engine:V9 
  Physical Name: C:\Program Files\SAS\SAS 9.1
2  libname rd xport 
'C:\DOCUME~1\DSONNE~1\LOCALS~1\Temp\Rtmp3540\file26090';
NOTE: Libref RD was successfully assigned as follows: 
  Engine:XPORT 
  Physical Name: C:\DOCUME~1\DSONNE~1\LOCALS~1\Temp\Rtmp3540\file26090
3  proc copy in=src2rd out=rd;
4  select pcb ;
ERROR: The file SRC2RD.PCB (memtype=ALL) was not found, but appears on a SELECT 
statement.
ERROR: The file SRC2RD.PCB (memtype=ALL) was not found, but appears on a SELECT 
statement.
ERROR: The file SRC2RD.PCB (memtype=ALL) was not found, but appears on a SELECT 
statement.
WARNING: Input library SRC2RD is empty.
NOTE: Statements not processed because of errors noted above.
NOTE: The SAS System stopped processing this step because of errors.
NOTE: PROCEDURE COPY used (Total process time):
  real time   0.00 seconds
  cpu time0.01 seconds
  

ERROR: Errors printed on page 1.
ERROR: Errors printed on page 1.
ERROR: Errors printed on page 1.

NOTE: SAS Institute Inc., SAS Campus Drive, Cary, NC USA 27513-2414
NOTE: The SAS System used:
  real time   0.16 seconds
  cpu time0.20 seconds
  
Does anyone see what I am doing incorrectly and can they offer any suggestions 
about getting this to run correctly?
 I'm not sure where SAS is expecting to find the data file. I have it in the 
default R directory. Is this where
SAS is looking for it or does it need to be somewhere else?

Thanks,


-- 
Dean Sonneborn
Programmer Analyst
Department of Public Health Sciences
University of California, Davis
(916) 734-6656


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Re: [R] reading SAS data files

2005-09-26 Thread Prof Brian Ripley
On Mon, 26 Sep 2005, Dean Sonneborn wrote:

 I am attempting to read in a SAS 9.1 data file. After starting R I
 change to the directory containing the sas data file and use the dir
 command to confirm that it is there. Then I run the following R-code:

 library(foreign)

 sashome - /Program Files/SAS/SAS 9.1

 test-read.ssd(file.path(sashome), pcb,

 sascmd = file.path(sashome, sas.exe))


   but R responds with:

 SAS failed.  SAS program at 
 C:\DOCUME~1\DSONNE~1\LOCALS~1\Temp\Rtmp3540\file16169.sas
 The log file will be file16169.log in the current directory
 Warning message:
 SAS return code was 2 in: read.ssd(file.path(sashome), pcb, sascmd = 
 file.path(sashome,


   the SAS log file contain this:

 NOTE: Copyright (c) 2002-2003 by SAS Institute Inc., Cary, NC, USA.
 NOTE: SAS (r) 9.1 (TS1M3)
  Licensed to UNIV OF CA/DAVIS, Site 0029107010.
 NOTE: This session is executing on the XP_PRO  platform.



 NOTE: SAS initialization used:
  real time   0.13 seconds
  cpu time0.18 seconds

 1  libname src2rd '/Program Files/SAS/SAS 9.1';
 NOTE: Libref SRC2RD was successfully assigned as follows:
  Engine:V9
  Physical Name: C:\Program Files\SAS\SAS 9.1
 2  libname rd xport 
 'C:\DOCUME~1\DSONNE~1\LOCALS~1\Temp\Rtmp3540\file26090';
 NOTE: Libref RD was successfully assigned as follows:
  Engine:XPORT
  Physical Name: C:\DOCUME~1\DSONNE~1\LOCALS~1\Temp\Rtmp3540\file26090
 3  proc copy in=src2rd out=rd;
 4  select pcb ;
 ERROR: The file SRC2RD.PCB (memtype=ALL) was not found, but appears on a 
 SELECT statement.
 ERROR: The file SRC2RD.PCB (memtype=ALL) was not found, but appears on a 
 SELECT statement.
 ERROR: The file SRC2RD.PCB (memtype=ALL) was not found, but appears on a 
 SELECT statement.
 WARNING: Input library SRC2RD is empty.
 NOTE: Statements not processed because of errors noted above.
 NOTE: The SAS System stopped processing this step because of errors.
 NOTE: PROCEDURE COPY used (Total process time):
  real time   0.00 seconds
  cpu time0.01 seconds


 ERROR: Errors printed on page 1.
 ERROR: Errors printed on page 1.
 ERROR: Errors printed on page 1.

 NOTE: SAS Institute Inc., SAS Campus Drive, Cary, NC USA 27513-2414
 NOTE: The SAS System used:
  real time   0.16 seconds
  cpu time0.20 seconds

 Does anyone see what I am doing incorrectly and can they offer any 
 suggestions about getting this to run correctly? I'm not sure where SAS 
 is expecting to find the data file. I have it in the default R 
 directory. Is this where SAS is looking for it or does it need to be 
 somewhere else?

I suggest you read the help file for read.ssd.  You are not telling it 
where the SAS files are correctly.  See the extracts below and the 
examples.

Usage:

  read.ssd(libname, sectionnames,
 tmpXport=tempfile(), tmpProgLoc=tempfile(), sascmd=sas)

Arguments:

  libname: character string defining the SAS library (usually a
   directory reference)

sectionnames: character vector giving member names. These are files in
   the 'libname' directory. They will usually have a '.ssd0x' or
   '.sas7bdat' extension, which should be omitted.

The files are not in the SAS homne directory, but the `default R 
directory' (perhaps you mean the working directory?).


 PLEASE do read the posting guide! http://www.R-project.org/posting-guide.html

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-- 
Brian D. Ripley,  [EMAIL PROTECTED]
Professor of Applied Statistics,  http://www.stats.ox.ac.uk/~ripley/
University of Oxford, Tel:  +44 1865 272861 (self)
1 South Parks Road, +44 1865 272866 (PA)
Oxford OX1 3TG, UKFax:  +44 1865 272595

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