Re: [R] what does Height represent?

2006-09-19 Thread Anupam Tyagi
zhaoshi zhaoshi at u.washington.edu writes:

 
 hi--
 
 I am new to R and try to use R cluster my binary data. I use 
 hierarchical clustering
 plot (hclust (dist(x,method=binary),method=average),cex=0.1)
 I end up with a cluster Dendrogram. On the left of my dendrogram, there 
 is scale called Height from 0.0 to 1.0.
 I don't understand what does Height represent. If the Height represents 
 the distance scale between two different data point,
 it looks like if I add up the length of each branch, I end up with 
 distance of some pairs  1. It is not possible the distance
 between any data point will greater than 1. Could some help me out?

Hi zhaoshi, please check the documentation for the function using ?hclust. You
may also want to look at a book that uses R/S-plus for cluster analysis.
Venables and Ripley's Modern Applied Statistics with S-plus Chapter 11 may be
of some help. Anupam.

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[R] what does Height represent?

2006-09-14 Thread zhaoshi
hi--

I am new to R and try to use R cluster my binary data. I use 
hierarchical clustering
plot (hclust (dist(x,method=binary),method=average),cex=0.1)
I end up with a cluster Dendrogram. On the left of my dendrogram, there 
is scale called Height from 0.0 to 1.0.
I don't understand what does Height represent. If the Height represents 
the distance scale between two different data point,
it looks like if I add up the length of each branch, I end up with 
distance of some pairs  1. It is not possible the distance
between any data point will greater than 1. Could some help me out?
 
Thanks


Zhaoshi

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PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
and provide commented, minimal, self-contained, reproducible code.