Re: [R] mysterious error on compile R 2.3.1
On Wed, 20 Sep 2006, Dylan Beaudette wrote: Getting a very strange error with a new install of R from source on x86; make[3]: Leaving directory `/tmp/R.INSTALL.r20887/cluster/src' ** R ** data ** moving datasets to lazyload DB Error in factor(c(1, 2, 1, 1, 1, 1, 1, 1, 2, 2, 2, 2, 2, 2, 2, 2, 2, 1), : invalid labels; length 2 should be 1 or 1 Execution halted ERROR: lazydata failed for package 'cluster' ** Removing '/home/dylan/src/R-2.3.1/library/cluster' make[2]: *** [cluster.ts] Error 1 make[2]: Leaving directory `/home/dylan/src/R-2.3.1/src/library/Recommended' make[1]: *** [recommended-packages] Error 2 make[1]: Leaving directory `/home/dylan/src/R-2.3.1/src/library/Recommended' make: *** [stamp-recommended] Error 2 note that i am using the GCC flags: CFLAGS=-march=opteron -ffast-math CXXFLAGS=-march=opteron -ffast-math We do request you do not do so in the R-admin manual. From the gcc man page: This option should never be turned on by any -O option since it can result in incorrect output for programs which depend on an exact implementation of IEEE or ISO rules/specifications for math func- tions. R is such a program. -- Brian D. Ripley, [EMAIL PROTECTED] Professor of Applied Statistics, http://www.stats.ox.ac.uk/~ripley/ University of Oxford, Tel: +44 1865 272861 (self) 1 South Parks Road, +44 1865 272866 (PA) Oxford OX1 3TG, UKFax: +44 1865 272595 __ R-help@stat.math.ethz.ch mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
Re: [R] mysterious error on compile R 2.3.1
Dylan Beaudette [EMAIL PROTECTED] writes: Getting a very strange error with a new install of R from source on x86; make[3]: Leaving directory `/tmp/R.INSTALL.r20887/cluster/src' ** R ** data ** moving datasets to lazyload DB Error in factor(c(1, 2, 1, 1, 1, 1, 1, 1, 2, 2, 2, 2, 2, 2, 2, 2, 2, 1), : invalid labels; length 2 should be 1 or 1 Execution halted ERROR: lazydata failed for package 'cluster' ** Removing '/home/dylan/src/R-2.3.1/library/cluster' make[2]: *** [cluster.ts] Error 1 make[2]: Leaving directory `/home/dylan/src/R-2.3.1/src/library/Recommended' make[1]: *** [recommended-packages] Error 2 make[1]: Leaving directory `/home/dylan/src/R-2.3.1/src/library/Recommended' make: *** [stamp-recommended] Error 2 note that i am using the GCC flags: CFLAGS=-march=opteron -ffast-math CXXFLAGS=-march=opteron -ffast-math any ideas? Don't do that Seriously! -ffast-math will allow the compiler to break IEEE math specifications, which in turn will break R all over the place. -- O__ Peter Dalgaard Øster Farimagsgade 5, Entr.B c/ /'_ --- Dept. of Biostatistics PO Box 2099, 1014 Cph. K (*) \(*) -- University of Copenhagen Denmark Ph: (+45) 35327918 ~~ - ([EMAIL PROTECTED]) FAX: (+45) 35327907 __ R-help@stat.math.ethz.ch mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
Re: [R] mysterious error on compile R 2.3.1
On Wednesday 20 September 2006 12:38, Peter Dalgaard wrote: Dylan Beaudette [EMAIL PROTECTED] writes: Getting a very strange error with a new install of R from source on x86; make[3]: Leaving directory `/tmp/R.INSTALL.r20887/cluster/src' ** R ** data ** moving datasets to lazyload DB Error in factor(c(1, 2, 1, 1, 1, 1, 1, 1, 2, 2, 2, 2, 2, 2, 2, 2, 2, 1), : invalid labels; length 2 should be 1 or 1 Execution halted ERROR: lazydata failed for package 'cluster' ** Removing '/home/dylan/src/R-2.3.1/library/cluster' make[2]: *** [cluster.ts] Error 1 make[2]: Leaving directory `/home/dylan/src/R-2.3.1/src/library/Recommended' make[1]: *** [recommended-packages] Error 2 make[1]: Leaving directory `/home/dylan/src/R-2.3.1/src/library/Recommended' make: *** [stamp-recommended] Error 2 note that i am using the GCC flags: CFLAGS=-march=opteron -ffast-math CXXFLAGS=-march=opteron -ffast-math any ideas? Don't do that Seriously! -ffast-math will allow the compiler to break IEEE math specifications, which in turn will break R all over the place. yikes! i wont do that anymore. this fixed the problem. thanks! cheers, -- Dylan Beaudette Soils and Biogeochemistry Graduate Group University of California at Davis 530.754.7341 __ R-help@stat.math.ethz.ch mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
