[R-pkg-devel] Package windows binaries not updating?

2020-03-11 Thread Joe Thorley
Hi All

Version 0.4.0 of the chk package was accepted by CRAN over a week ago (on March 
3rd 2020). 

However, the windows binaries have not yet updated for r-devel and r-release.

https://cran.r-project.org/web/packages/chk/index.html 
<https://cran.r-project.org/web/packages/chk/index.html>

Is there anything I can do to facilitate their updating or do I just need to be 
more patient?

Thanks

Joe

Joe Thorley PhD, RPBio
Computational Biologist
Poisson Consulting Ltd.
4216 Shasheen Road
Nelson, BC
V1L 6X1, Canada
Tel: +1 250 551 2194
Email: j...@poissonconsulting.ca
Web: www.poissonconsulting.ca
Skype: joethorley




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Re: [R-pkg-devel] extending as.mcmc.list

2018-04-12 Thread Joe Thorley
Hi Georgi

That fixed it

Thanks

Joe

> On Apr 12, 2018, at 08:27, Georgi Boshnakov 
>  wrote:
> 
> The following is in your NAMESPACE:
> 
> export(as.mcmc.list)
> 
> Don't export as.mcmc.list, presumably this is the one from 'coda ' it is 
> rarely your responsibility.
> 
> 
> Georgi Boshnakov
> 
> -Original Message-
> From: R-package-devel [mailto:r-package-devel-boun...@r-project.org 
> <mailto:r-package-devel-boun...@r-project.org>] On Behalf Of Joe Thorley
> Sent: 12 April 2018 16:01
> To: r-package-devel@r-project.org <mailto:r-package-devel@r-project.org>
> Subject: [R-pkg-devel] extending as.mcmc.list
> 
> The S3 generic function coda::as.mcmc.list has a check exclusion in 
> R-devel/src/library/tools/R/utils.R.
> 
> I am trying to extend it to objects of various classes
> 
> https://github.com/poissonconsulting/mcmcr/blob/master/R/as.mcmc.list.R 
> <https://github.com/poissonconsulting/mcmcr/blob/master/R/as.mcmc.list.R><https://github.com/poissonconsulting/mcmcr/blob/master/R/as.mcmc.list.R
>  <https://github.com/poissonconsulting/mcmcr/blob/master/R/as.mcmc.list.R>>
> 
> However I get the note 
> 
> Found the following apparent S3 methods exported but not registered:
>  as.mcmc.list
> See section ‘Registering S3 methods’ in the ‘Writing R Extensions’
> manual.
> 
> Although this note is discussed on r-package-devel
> 
> https://stat.ethz.ch/pipermail/r-package-devel/2017q2/001531.html 
> <https://stat.ethz.ch/pipermail/r-package-devel/2017q2/001531.html><https://stat.ethz.ch/pipermail/r-package-devel/2017q2/001531.html
>  <https://stat.ethz.ch/pipermail/r-package-devel/2017q2/001531.html>>
> 
> I am unclear about how I should resolve the issue.
> 
> Currently I am considering renaming the function to as.mcmc_list although 
> this feels somewhat unsatisfactory.
> 
> Any advice is appreciated
> 
> Joe
> 
> Joe Thorley PhD, RPBio
> Computational Biologist
> Poisson Consulting Ltd.
> 4216 Shasheen Road
> Nelson, BC
> V1L 6X1, Canada
> Tel: +1 250 551 2194
> Email: j...@poissonconsulting.ca
> Web: www.poissonconsulting.ca
> Skype: joethorley
> 
> 
> 
> 
>   [[alternative HTML version deleted]]
> 
> __
> R-package-devel@r-project.org <mailto:R-package-devel@r-project.org> mailing 
> list https://stat.ethz.ch/mailman/listinfo/r-package-devel 
> <https://stat.ethz.ch/mailman/listinfo/r-package-devel>
Joe Thorley PhD, RPBio
Computational Biologist
Poisson Consulting Ltd.
4216 Shasheen Road
Nelson, BC
V1L 6X1, Canada
Tel: +1 250 551 2194
Email: j...@poissonconsulting.ca
Web: www.poissonconsulting.ca
Skype: joethorley




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[R-pkg-devel] extending as.mcmc.list

2018-04-12 Thread Joe Thorley
The S3 generic function coda::as.mcmc.list has a check exclusion in 
R-devel/src/library/tools/R/utils.R.

I am trying to extend it to objects of various classes

https://github.com/poissonconsulting/mcmcr/blob/master/R/as.mcmc.list.R 
<https://github.com/poissonconsulting/mcmcr/blob/master/R/as.mcmc.list.R>

However I get the note 

Found the following apparent S3 methods exported but not registered:
  as.mcmc.list
See section ‘Registering S3 methods’ in the ‘Writing R Extensions’
manual.

Although this note is discussed on r-package-devel

https://stat.ethz.ch/pipermail/r-package-devel/2017q2/001531.html 
<https://stat.ethz.ch/pipermail/r-package-devel/2017q2/001531.html>

I am unclear about how I should resolve the issue.

Currently I am considering renaming the function to as.mcmc_list although this 
feels somewhat unsatisfactory.

Any advice is appreciated

Joe

Joe Thorley PhD, RPBio
Computational Biologist
Poisson Consulting Ltd.
4216 Shasheen Road
Nelson, BC
V1L 6X1, Canada
Tel: +1 250 551 2194
Email: j...@poissonconsulting.ca
Web: www.poissonconsulting.ca
Skype: joethorley




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[R-pkg-devel] Please ensure that the license you choose also covers any dependencies (including system dependencies) of your package

2017-09-02 Thread Joe Thorley
Writing R extensions 
<https://cran.r-project.org/doc/manuals/R-exts.html#Licensing> states that

> Please ensure that the license you choose also covers any dependencies 
> (including system dependencies) of your package

Is this considered to apply to R packages in Imports, Depends or Suggests?

Thanks

Joe

Joe Thorley PhD, RPBio
Computational Biologist
Poisson Consulting Ltd.
4216 Shasheen Road
Nelson, BC
V1L 6X1, Canada
Tel: +1 250 551 2194
Email: j...@poissonconsulting.ca
Web: www.poissonconsulting.ca
Skype: joethorley




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