Re: [R-pkg-devel] Checking on Debian on RHub
I mean, here: https://github.com/r-hub/sysreqsdb/commit/e4dd4d6c240407317abb67e156d99ef738a7e73c https://github.com/r-hub/sysreqsdb/commit/88718aad52df59b7e76c2db563991558a168b05e G. On Thu, Apr 8, 2021 at 6:12 PM Gábor Csárdi wrote: > > Should be fixed in e4dd4d6c240407317abb67e156d99ef738a7e73c and > 88718aad52df59b7e76c2db563991558a168b05e > > I haven't yet tested it, though > > G. > > On Thu, Apr 8, 2021 at 5:58 PM Roy Mendelssohn - NOAA Federal > wrote: > > > > My apologies, it is the Fedora instance. Short version summary: > > > > Warning messages: > > 5558#> 1: In i.p(...) : installation of package ‘rgdal’ had non-zero exit > > status > > 5559#> 2: In i.p(...) : installation of package ‘sf’ had non-zero exit > > status > > 5560#> 3: In i.p(...) : > > 5561#> installation of package ‘plotdap’ had non-zero exit status > > > > 'plotdap' depends on sf which is why it fails. Long version is at > > https://builder.r-hub.io/status/rerddapXtracto_1.1.0.tar.gz-f3facfb7e282436c98dce8b5014de474 > > > > Thanks, > > > > -Roy > > > > > On Apr 8, 2021, at 7:35 AM, Roy Mendelssohn - NOAA Federal > > > wrote: > > > > > > Thanks Gabor. I will post more information later today when I get a > > > chance. I actually put something on issue tracker a year or two ago, > > > after posting here and having suggested that I raise an issue. > > > > > > I really appreciate the work going into RHub - the reason I am having > > > this problem is I use RHub to check my submissions. I just keep failing > > > in my CRAN submissions on Debian while passing on Windows and Mac, sort > > > of frustrating. > > > > > > -Roy > > > > > >> On Apr 8, 2021, at 12:22 AM, Gábor Csárdi wrote: > > >> > > >> Hi, > > >> > > >> Which one is your package? Which spatial package fails? Can you link > > >> to an issue in the issue tracker, if there is one? > > >> > > >> As for an alternative, you can run a Docker container. This works on > > >> Linux, Windows and macOS, on any recent enough machine. You can run > > >> one of the R-hub containers, e.g. > > >> https://hub.docker.com/repository/docker/rhub/debian-gcc-devel and > > >> then try to fix the installation issue. Or you can try a bigger > > >> container that tries to mirror CRAN exactly: > > >> https://hub.docker.com/r/cran/debian > > >> > > >> Gabor > > >> > > >> On Thu, Apr 8, 2021 at 6:49 AM Roy Mendelssohn - NOAA Federal via > > >> R-package-devel wrote: > > >>> > > >>> Hi All: > > >>> > > >>> I still have problems with checking one of my packages on RHub running > > >>> Debian, as the Preprocessing fails in building in some of the needed > > >>> spatial packages. This problem was reported quite awhile ago, and > > >>> never appears to have been completely fixed. Is there an alternate > > >>> place I can test a package under Debian that is consistent with CRAN. > > >>> > > >>> Thanks, > > >>> > > >>> -Roy > > >>> > > >>> ** > > >>> "The contents of this message do not reflect any position of the U.S. > > >>> Government or NOAA." > > >>> ** > > >>> Roy Mendelssohn > > >>> Supervisory Operations Research Analyst > > >>> NOAA/NMFS > > >>> Environmental Research Division > > >>> Southwest Fisheries Science Center > > >>> ***Note new street address*** > > >>> 110 McAllister Way > > >>> Santa Cruz, CA 95060 > > >>> Phone: (831)-420-3666 > > >>> Fax: (831) 420-3980 > > >>> e-mail: roy.mendelss...@noaa.gov www: https://www.pfeg.noaa.gov/ > > >>> > > >>> "Old age and treachery will overcome youth and skill." > > >>> "From those who have been given much, much will be expected" > > >>> "the arc of the moral universe is long, but it bends toward justice" > > >>> -MLK Jr. > > >>> > > >>> __ > > >>> R-package-devel@r-project.org mailing list > > >>> https://stat.ethz.ch/mailman/listinfo/r-package-devel > > > > > > ** > > > "The contents of this message do not reflect any position of the U.S. > > > Government or NOAA." > > > ** > > > Roy Mendelssohn > > > Supervisory Operations Research Analyst > > > NOAA/NMFS > > > Environmental Research Division > > > Southwest Fisheries Science Center > > > ***Note new street address*** > > > 110 McAllister Way > > > Santa Cruz, CA 95060 > > > Phone: (831)-420-3666 > > > Fax: (831) 420-3980 > > > e-mail: roy.mendelss...@noaa.gov www: https://www.pfeg.noaa.gov/ > > > > > > "Old age and treachery will overcome youth and skill." > > > "From those who have been given much, much will be expected" > > > "the arc of the moral universe is long, but it bends toward justice" -MLK > > > Jr. > > > > > > > ** > > "The contents of this message do not reflect any position of the U.S. > > Government or NOAA." > > ** > > Roy Mendelssohn > > Supervisory Operations Research Analyst > > NOAA/NMFS > > Environmental Research Division > > Southwest Fisheries Science Center > > ***Note new street
Re: [R-pkg-devel] Checking on Debian on RHub
Should be fixed in e4dd4d6c240407317abb67e156d99ef738a7e73c and 88718aad52df59b7e76c2db563991558a168b05e I haven't yet tested it, though G. On Thu, Apr 8, 2021 at 5:58 PM Roy Mendelssohn - NOAA Federal wrote: > > My apologies, it is the Fedora instance. Short version summary: > > Warning messages: > 5558#> 1: In i.p(...) : installation of package ‘rgdal’ had non-zero exit > status > 5559#> 2: In i.p(...) : installation of package ‘sf’ had non-zero exit status > 5560#> 3: In i.p(...) : > 5561#> installation of package ‘plotdap’ had non-zero exit status > > 'plotdap' depends on sf which is why it fails. Long version is at > https://builder.r-hub.io/status/rerddapXtracto_1.1.0.tar.gz-f3facfb7e282436c98dce8b5014de474 > > Thanks, > > -Roy > > > On Apr 8, 2021, at 7:35 AM, Roy Mendelssohn - NOAA Federal > > wrote: > > > > Thanks Gabor. I will post more information later today when I get a > > chance. I actually put something on issue tracker a year or two ago, > > after posting here and having suggested that I raise an issue. > > > > I really appreciate the work going into RHub - the reason I am having this > > problem is I use RHub to check my submissions. I just keep failing in my > > CRAN submissions on Debian while passing on Windows and Mac, sort of > > frustrating. > > > > -Roy > > > >> On Apr 8, 2021, at 12:22 AM, Gábor Csárdi wrote: > >> > >> Hi, > >> > >> Which one is your package? Which spatial package fails? Can you link > >> to an issue in the issue tracker, if there is one? > >> > >> As for an alternative, you can run a Docker container. This works on > >> Linux, Windows and macOS, on any recent enough machine. You can run > >> one of the R-hub containers, e.g. > >> https://hub.docker.com/repository/docker/rhub/debian-gcc-devel and > >> then try to fix the installation issue. Or you can try a bigger > >> container that tries to mirror CRAN exactly: > >> https://hub.docker.com/r/cran/debian > >> > >> Gabor > >> > >> On Thu, Apr 8, 2021 at 6:49 AM Roy Mendelssohn - NOAA Federal via > >> R-package-devel wrote: > >>> > >>> Hi All: > >>> > >>> I still have problems with checking one of my packages on RHub running > >>> Debian, as the Preprocessing fails in building in some of the needed > >>> spatial packages. This problem was reported quite awhile ago, and never > >>> appears to have been completely fixed. Is there an alternate place I can > >>> test a package under Debian that is consistent with CRAN. > >>> > >>> Thanks, > >>> > >>> -Roy > >>> > >>> ** > >>> "The contents of this message do not reflect any position of the U.S. > >>> Government or NOAA." > >>> ** > >>> Roy Mendelssohn > >>> Supervisory Operations Research Analyst > >>> NOAA/NMFS > >>> Environmental Research Division > >>> Southwest Fisheries Science Center > >>> ***Note new street address*** > >>> 110 McAllister Way > >>> Santa Cruz, CA 95060 > >>> Phone: (831)-420-3666 > >>> Fax: (831) 420-3980 > >>> e-mail: roy.mendelss...@noaa.gov www: https://www.pfeg.noaa.gov/ > >>> > >>> "Old age and treachery will overcome youth and skill." > >>> "From those who have been given much, much will be expected" > >>> "the arc of the moral universe is long, but it bends toward justice" -MLK > >>> Jr. > >>> > >>> __ > >>> R-package-devel@r-project.org mailing list > >>> https://stat.ethz.ch/mailman/listinfo/r-package-devel > > > > ** > > "The contents of this message do not reflect any position of the U.S. > > Government or NOAA." > > ** > > Roy Mendelssohn > > Supervisory Operations Research Analyst > > NOAA/NMFS > > Environmental Research Division > > Southwest Fisheries Science Center > > ***Note new street address*** > > 110 McAllister Way > > Santa Cruz, CA 95060 > > Phone: (831)-420-3666 > > Fax: (831) 420-3980 > > e-mail: roy.mendelss...@noaa.gov www: https://www.pfeg.noaa.gov/ > > > > "Old age and treachery will overcome youth and skill." > > "From those who have been given much, much will be expected" > > "the arc of the moral universe is long, but it bends toward justice" -MLK > > Jr. > > > > ** > "The contents of this message do not reflect any position of the U.S. > Government or NOAA." > ** > Roy Mendelssohn > Supervisory Operations Research Analyst > NOAA/NMFS > Environmental Research Division > Southwest Fisheries Science Center > ***Note new street address*** > 110 McAllister Way > Santa Cruz, CA 95060 > Phone: (831)-420-3666 > Fax: (831) 420-3980 > e-mail: roy.mendelss...@noaa.gov www: https://www.pfeg.noaa.gov/ > > "Old age and treachery will overcome youth and skill." > "From those who have been given much, much will be expected" > "the arc of the moral universe is long, but it bends toward justice" -MLK Jr. > __ R-package-devel@r-project.org mailing list
Re: [R-pkg-devel] Checking on Debian on RHub
My apologies, it is the Fedora instance. Short version summary: Warning messages: 5558#> 1: In i.p(...) : installation of package ‘rgdal’ had non-zero exit status 5559#> 2: In i.p(...) : installation of package ‘sf’ had non-zero exit status 5560#> 3: In i.p(...) : 5561#> installation of package ‘plotdap’ had non-zero exit status 'plotdap' depends on sf which is why it fails. Long version is at https://builder.r-hub.io/status/rerddapXtracto_1.1.0.tar.gz-f3facfb7e282436c98dce8b5014de474 Thanks, -Roy > On Apr 8, 2021, at 7:35 AM, Roy Mendelssohn - NOAA Federal > wrote: > > Thanks Gabor. I will post more information later today when I get a chance. > I actually put something on issue tracker a year or two ago, after posting > here and having suggested that I raise an issue. > > I really appreciate the work going into RHub - the reason I am having this > problem is I use RHub to check my submissions. I just keep failing in my > CRAN submissions on Debian while passing on Windows and Mac, sort of > frustrating. > > -Roy > >> On Apr 8, 2021, at 12:22 AM, Gábor Csárdi wrote: >> >> Hi, >> >> Which one is your package? Which spatial package fails? Can you link >> to an issue in the issue tracker, if there is one? >> >> As for an alternative, you can run a Docker container. This works on >> Linux, Windows and macOS, on any recent enough machine. You can run >> one of the R-hub containers, e.g. >> https://hub.docker.com/repository/docker/rhub/debian-gcc-devel and >> then try to fix the installation issue. Or you can try a bigger >> container that tries to mirror CRAN exactly: >> https://hub.docker.com/r/cran/debian >> >> Gabor >> >> On Thu, Apr 8, 2021 at 6:49 AM Roy Mendelssohn - NOAA Federal via >> R-package-devel wrote: >>> >>> Hi All: >>> >>> I still have problems with checking one of my packages on RHub running >>> Debian, as the Preprocessing fails in building in some of the needed >>> spatial packages. This problem was reported quite awhile ago, and never >>> appears to have been completely fixed. Is there an alternate place I can >>> test a package under Debian that is consistent with CRAN. >>> >>> Thanks, >>> >>> -Roy >>> >>> ** >>> "The contents of this message do not reflect any position of the U.S. >>> Government or NOAA." >>> ** >>> Roy Mendelssohn >>> Supervisory Operations Research Analyst >>> NOAA/NMFS >>> Environmental Research Division >>> Southwest Fisheries Science Center >>> ***Note new street address*** >>> 110 McAllister Way >>> Santa Cruz, CA 95060 >>> Phone: (831)-420-3666 >>> Fax: (831) 420-3980 >>> e-mail: roy.mendelss...@noaa.gov www: https://www.pfeg.noaa.gov/ >>> >>> "Old age and treachery will overcome youth and skill." >>> "From those who have been given much, much will be expected" >>> "the arc of the moral universe is long, but it bends toward justice" -MLK >>> Jr. >>> >>> __ >>> R-package-devel@r-project.org mailing list >>> https://stat.ethz.ch/mailman/listinfo/r-package-devel > > ** > "The contents of this message do not reflect any position of the U.S. > Government or NOAA." > ** > Roy Mendelssohn > Supervisory Operations Research Analyst > NOAA/NMFS > Environmental Research Division > Southwest Fisheries Science Center > ***Note new street address*** > 110 McAllister Way > Santa Cruz, CA 95060 > Phone: (831)-420-3666 > Fax: (831) 420-3980 > e-mail: roy.mendelss...@noaa.gov www: https://www.pfeg.noaa.gov/ > > "Old age and treachery will overcome youth and skill." > "From those who have been given much, much will be expected" > "the arc of the moral universe is long, but it bends toward justice" -MLK Jr. > ** "The contents of this message do not reflect any position of the U.S. Government or NOAA." ** Roy Mendelssohn Supervisory Operations Research Analyst NOAA/NMFS Environmental Research Division Southwest Fisheries Science Center ***Note new street address*** 110 McAllister Way Santa Cruz, CA 95060 Phone: (831)-420-3666 Fax: (831) 420-3980 e-mail: roy.mendelss...@noaa.gov www: https://www.pfeg.noaa.gov/ "Old age and treachery will overcome youth and skill." "From those who have been given much, much will be expected" "the arc of the moral universe is long, but it bends toward justice" -MLK Jr. __ R-package-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-package-devel
Re: [R-pkg-devel] Checking on Debian on RHub
Thanks Gabor. I will post more information later today when I get a chance. I actually put something on issue tracker a year or two ago, after posting here and having suggested that I raise an issue. I really appreciate the work going into RHub - the reason I am having this problem is I use RHub to check my submissions. I just keep failing in my CRAN submissions on Debian while passing on Windows and Mac, sort of frustrating. -Roy > On Apr 8, 2021, at 12:22 AM, Gábor Csárdi wrote: > > Hi, > > Which one is your package? Which spatial package fails? Can you link > to an issue in the issue tracker, if there is one? > > As for an alternative, you can run a Docker container. This works on > Linux, Windows and macOS, on any recent enough machine. You can run > one of the R-hub containers, e.g. > https://hub.docker.com/repository/docker/rhub/debian-gcc-devel and > then try to fix the installation issue. Or you can try a bigger > container that tries to mirror CRAN exactly: > https://hub.docker.com/r/cran/debian > > Gabor > > On Thu, Apr 8, 2021 at 6:49 AM Roy Mendelssohn - NOAA Federal via > R-package-devel wrote: >> >> Hi All: >> >> I still have problems with checking one of my packages on RHub running >> Debian, as the Preprocessing fails in building in some of the needed >> spatial packages. This problem was reported quite awhile ago, and never >> appears to have been completely fixed. Is there an alternate place I can >> test a package under Debian that is consistent with CRAN. >> >> Thanks, >> >> -Roy >> >> ** >> "The contents of this message do not reflect any position of the U.S. >> Government or NOAA." >> ** >> Roy Mendelssohn >> Supervisory Operations Research Analyst >> NOAA/NMFS >> Environmental Research Division >> Southwest Fisheries Science Center >> ***Note new street address*** >> 110 McAllister Way >> Santa Cruz, CA 95060 >> Phone: (831)-420-3666 >> Fax: (831) 420-3980 >> e-mail: roy.mendelss...@noaa.gov www: https://www.pfeg.noaa.gov/ >> >> "Old age and treachery will overcome youth and skill." >> "From those who have been given much, much will be expected" >> "the arc of the moral universe is long, but it bends toward justice" -MLK Jr. >> >> __ >> R-package-devel@r-project.org mailing list >> https://stat.ethz.ch/mailman/listinfo/r-package-devel ** "The contents of this message do not reflect any position of the U.S. Government or NOAA." ** Roy Mendelssohn Supervisory Operations Research Analyst NOAA/NMFS Environmental Research Division Southwest Fisheries Science Center ***Note new street address*** 110 McAllister Way Santa Cruz, CA 95060 Phone: (831)-420-3666 Fax: (831) 420-3980 e-mail: roy.mendelss...@noaa.gov www: https://www.pfeg.noaa.gov/ "Old age and treachery will overcome youth and skill." "From those who have been given much, much will be expected" "the arc of the moral universe is long, but it bends toward justice" -MLK Jr. __ R-package-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-package-devel
Re: [R-pkg-devel] Checking on Debian on RHub
Hi, Which one is your package? Which spatial package fails? Can you link to an issue in the issue tracker, if there is one? As for an alternative, you can run a Docker container. This works on Linux, Windows and macOS, on any recent enough machine. You can run one of the R-hub containers, e.g. https://hub.docker.com/repository/docker/rhub/debian-gcc-devel and then try to fix the installation issue. Or you can try a bigger container that tries to mirror CRAN exactly: https://hub.docker.com/r/cran/debian Gabor On Thu, Apr 8, 2021 at 6:49 AM Roy Mendelssohn - NOAA Federal via R-package-devel wrote: > > Hi All: > > I still have problems with checking one of my packages on RHub running > Debian, as the Preprocessing fails in building in some of the needed spatial > packages. This problem was reported quite awhile ago, and never appears to > have been completely fixed. Is there an alternate place I can test a package > under Debian that is consistent with CRAN. > > Thanks, > > -Roy > > ** > "The contents of this message do not reflect any position of the U.S. > Government or NOAA." > ** > Roy Mendelssohn > Supervisory Operations Research Analyst > NOAA/NMFS > Environmental Research Division > Southwest Fisheries Science Center > ***Note new street address*** > 110 McAllister Way > Santa Cruz, CA 95060 > Phone: (831)-420-3666 > Fax: (831) 420-3980 > e-mail: roy.mendelss...@noaa.gov www: https://www.pfeg.noaa.gov/ > > "Old age and treachery will overcome youth and skill." > "From those who have been given much, much will be expected" > "the arc of the moral universe is long, but it bends toward justice" -MLK Jr. > > __ > R-package-devel@r-project.org mailing list > https://stat.ethz.ch/mailman/listinfo/r-package-devel __ R-package-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-package-devel
[R-pkg-devel] Checking on Debian on RHub
Hi All: I still have problems with checking one of my packages on RHub running Debian, as the Preprocessing fails in building in some of the needed spatial packages. This problem was reported quite awhile ago, and never appears to have been completely fixed. Is there an alternate place I can test a package under Debian that is consistent with CRAN. Thanks, -Roy ** "The contents of this message do not reflect any position of the U.S. Government or NOAA." ** Roy Mendelssohn Supervisory Operations Research Analyst NOAA/NMFS Environmental Research Division Southwest Fisheries Science Center ***Note new street address*** 110 McAllister Way Santa Cruz, CA 95060 Phone: (831)-420-3666 Fax: (831) 420-3980 e-mail: roy.mendelss...@noaa.gov www: https://www.pfeg.noaa.gov/ "Old age and treachery will overcome youth and skill." "From those who have been given much, much will be expected" "the arc of the moral universe is long, but it bends toward justice" -MLK Jr. __ R-package-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-package-devel
