Re: [R-pkg-devel] Note about No repository set, so cyclic dependency check skipped

2015-07-20 Thread Dirk Eddelbuettel

On 20 July 2015 at 08:53, Martyn Plummer wrote:
| On Mon, 2015-07-20 at 07:36 +0200, Antonio José Saez Castillo wrote:
|  When checking a package I am getting
|  
|  * checking package dependencies ... NOTE
| No repository set, so cyclic dependency check skipped
|  
|  This is an old source of discussion and I've found a lot of suggestions,
|  but none of them work for me (.Rprofile and/or Rprofile.site edition and
|  so). What is more worrying is that I'm also getting this note when I check
|  in R-devel on win-builder site (win-builder.r-project.org). There is
|  another similar topic in relation to that (
|  
http://r.789695.n4.nabble.com/No-repository-set-so-cyclic-dependency-check-skipped-td4684184.html),
|  but I don't know if it is the same problem.
|  
|  How can I avoid this note?
| 
| This is covered in the Writing R Extensions manual (page 32), but if you
| tried creating a .Rprofile file and it didn't work then the problem
| might be that it is in the wrong place. On my Windows 7 desktop, R opens
| in my Documents folder rather than my home directory, so my .Rprofile
| folder has to go into Documents.

If I recall correctly, setting the environment variable HOME (which is not
standard under Window) allows you to control that.  Files such as ~/.Rprofile
will then be searched in the directory pointed to by the value assigned to
HOME.

Dirk

-- 
http://dirk.eddelbuettel.com | @eddelbuettel | e...@debian.org

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Re: [R-pkg-devel] Note about No repository set, so cyclic dependency check skipped

2015-07-20 Thread Martyn Plummer
On Mon, 2015-07-20 at 07:36 +0200, Antonio José Saez Castillo wrote:
 When checking a package I am getting
 
 * checking package dependencies ... NOTE
No repository set, so cyclic dependency check skipped
 
 This is an old source of discussion and I've found a lot of suggestions,
 but none of them work for me (.Rprofile and/or Rprofile.site edition and
 so). What is more worrying is that I'm also getting this note when I check
 in R-devel on win-builder site (win-builder.r-project.org). There is
 another similar topic in relation to that (
 http://r.789695.n4.nabble.com/No-repository-set-so-cyclic-dependency-check-skipped-td4684184.html),
 but I don't know if it is the same problem.
 
 How can I avoid this note?

This is covered in the Writing R Extensions manual (page 32), but if you
tried creating a .Rprofile file and it didn't work then the problem
might be that it is in the wrong place. On my Windows 7 desktop, R opens
in my Documents folder rather than my home directory, so my .Rprofile
folder has to go into Documents.

Martyn

 
 
 
 
 *Dr. Antonio José Sáez-Castillo*Department of Statistics and
 Operational Research
 Escuela Politécnica Superior de Linares
 UNIVERSIDAD DE JAÉN
 C/ Alfonso X el Sabio, 28
 23700 Linares (Jaén)
 Teléfono: +34 953 64 85 78
 e-mail: ajs...@ujaen.es
  https://www.researchgate.net/profile/Antonio_Saez-Castillo
 http://twitter.com/ajsaezUJA
 
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