Re: [R-sig-Fedora] x11() hangs in R 3.2.1
This bug is also being looked at on the main R bug list. https://bugs.r-project.org/bugzilla3/show_bug.cgi?id=16497 https://bugs.r-project.org/bugzilla3/show_bug.cgi?id=16535 Red Hat have found the bug in the x11() code and have posted solutions I believe. Simon -Original Message- From: R-SIG-Fedora [mailto:r-sig-fedora-boun...@r-project.org] On Behalf Of r-sig-fedora-requ...@r-project.org Sent: 17 September 2015 11:00 To: r-sig-fedora@r-project.org Subject: R-SIG-Fedora Digest, Vol 58, Issue 5 Send R-SIG-Fedora mailing list submissions to r-sig-fedora@r-project.org To subscribe or unsubscribe via the World Wide Web, visit https://stat.ethz.ch/mailman/listinfo/r-sig-fedora or, via email, send a message with subject or body 'help' to r-sig-fedora-requ...@r-project.org You can reach the person managing the list at r-sig-fedora-ow...@r-project.org When replying, please edit your Subject line so it is more specific than "Re: Contents of R-SIG-Fedora digest..." Today's Topics: 1. x11() hangs in R 3.2.1 (Ashley Ford) -- Message: 1 Date: Wed, 16 Sep 2015 11:53:53 + (UTC) From: Ashley Ford To: "r-sig-fedora@r-project.org" Subject: [R-sig-Fedora] x11() hangs in R 3.2.1 Message-ID: <6207435.388298.1442404434001.javamail.ya...@mail.yahoo.com> Content-Type: text/plain; charset="UTF-8" Yes, I have nvidia, recent updates includexorg-x11-drv-nvidia-devel-352.39-1.el6.x86_64 Tue 08 Sep 2015 04:07:42 PM BSTxorg-x11-drv-nvidia-gl-352.39-1.el6.x86_64 ? ?Tue 08 Sep 2015 04:04:03 PM BSTxorg-x11-drv-nvidia-libs-352.39-1.el6.x86_64 ?Tue 08 Sep 2015 04:04:01 PM BSTxorg-x11-drv-nvidia-352.39-1.el6.x86_64 ? ? ? Tue 08 Sep 2015 04:04:00 PM BST So far I have failed to find a copy of the old centos rpm ? ?http://rpm.pbone.net/ points at a location that doesn't exist, So? I tried using the redhat rpm? xorg-x11-server-Xorg-1.15.0-26.el6_6.x86_64.rpm but the downgrade fails, is yum out of step with rpm ? as given # yum downgrade xorg-x11-server-Xorg-1.15.0-36.el6.x86_64 ./xorg-x11-server-Xorg-1.15.0-26.el6_6.x86_64.rpm Loaded plugins: auto-update-debuginfo, fastestmirror, refresh-packagekit, security Setting up Downgrade Process Loading mirror speeds from cached hostfile ?* base: mirror.ox.ac.uk ?* epel: mirror.nl.leaseweb.net ?* epel-debuginfo: mirror.nl.leaseweb.net ?* extras: centos.serverspace.co.uk ?* updates: centos.serverspace.co.uk No package xorg-x11-server-Xorg-1.15.0-36.el6.x86_64 available. Examining ./xorg-x11-server-Xorg-1.15.0-26.el6_6.x86_64.rpm: xorg-x11-server-Xorg-1.15.0-26.el6_6.x86_64 Nothing to do and omitting the last part of the rpm name # yum downgrade xorg-x11-server-Xorg-1.15.0 ./xorg-x11-server-Xorg-1.15.0-26.el6_6.x86_64.rpmLoaded plugins: auto-update-debuginfo, fastestmirror, refresh-packagekit, security Setting up Downgrade Process ... Examining ./xorg-x11-server-Xorg-1.15.0-26.el6_6.x86_64.rpm: xorg-x11-server-Xorg-1.15.0-26.el6_6.x86_64 Nothing to do [[alternative HTML version deleted]] -- Subject: Digest Footer ___ R-SIG-Fedora mailing list R-SIG-Fedora@r-project.org https://stat.ethz.ch/mailman/listinfo/r-sig-fedora -- End of R-SIG-Fedora Digest, Vol 58, Issue 5 ___ R-SIG-Fedora mailing list R-SIG-Fedora@r-project.org https://stat.ethz.ch/mailman/listinfo/r-sig-fedora
[R-sig-Fedora] x11() hangs in R 3.2.1
Yes, I have nvidia, recent updates includexorg-x11-drv-nvidia-devel-352.39-1.el6.x86_64 Tue 08 Sep 2015 04:07:42 PM BSTxorg-x11-drv-nvidia-gl-352.39-1.el6.x86_64 Tue 08 Sep 2015 04:04:03 PM BSTxorg-x11-drv-nvidia-libs-352.39-1.el6.x86_64 Tue 08 Sep 2015 04:04:01 PM BSTxorg-x11-drv-nvidia-352.39-1.el6.x86_64 Tue 08 Sep 2015 04:04:00 PM BST So far I have failed to find a copy of the old centos rpm http://rpm.pbone.net/ points at a location that doesn't exist, So I tried using the redhat rpm xorg-x11-server-Xorg-1.15.0-26.el6_6.x86_64.rpm but the downgrade fails, is yum out of step with rpm ? as given # yum downgrade xorg-x11-server-Xorg-1.15.0-36.el6.x86_64 ./xorg-x11-server-Xorg-1.15.0-26.el6_6.x86_64.rpm Loaded plugins: auto-update-debuginfo, fastestmirror, refresh-packagekit, security Setting up Downgrade Process Loading mirror speeds from cached hostfile * base: mirror.ox.ac.uk * epel: mirror.nl.leaseweb.net * epel-debuginfo: mirror.nl.leaseweb.net * extras: centos.serverspace.co.uk * updates: centos.serverspace.co.uk No package xorg-x11-server-Xorg-1.15.0-36.el6.x86_64 available. Examining ./xorg-x11-server-Xorg-1.15.0-26.el6_6.x86_64.rpm: xorg-x11-server-Xorg-1.15.0-26.el6_6.x86_64 Nothing to do and omitting the last part of the rpm name # yum downgrade xorg-x11-server-Xorg-1.15.0 ./xorg-x11-server-Xorg-1.15.0-26.el6_6.x86_64.rpmLoaded plugins: auto-update-debuginfo, fastestmirror, refresh-packagekit, security Setting up Downgrade Process ... Examining ./xorg-x11-server-Xorg-1.15.0-26.el6_6.x86_64.rpm: xorg-x11-server-Xorg-1.15.0-26.el6_6.x86_64 Nothing to do [[alternative HTML version deleted]] ___ R-SIG-Fedora mailing list R-SIG-Fedora@r-project.org https://stat.ethz.ch/mailman/listinfo/r-sig-fedora
Re: [R-sig-Fedora] x11() hangs in R 3.2.1
> First question: Are you using the nvidia binary driver? Yes, yum downgrade xorg-x11-server-Xorg-1.15.0-36.el6.x86_64 /root/xorg-x11-server-Xorg-1.15.0-26.el6_6.x86_64.rpm and editing /etc/yum.conf to contain 'exclude=xorg*' fixes the problem. Steve -- Steven J. BackusComputer Systems Manager University of Utah E-Mail: steven.bac...@utah.edu Genetic EpidemiologyAlternate: bac...@math.utah.edu 391 Chipeta Way -- Suite D Office: 801.587.9308 Salt Lake City, UT 84108-1266 http://www.math.utah.edu/~backus ___ R-SIG-Fedora mailing list R-SIG-Fedora@r-project.org https://stat.ethz.ch/mailman/listinfo/r-sig-fedora
Re: [R-sig-Fedora] x11() hangs in R 3.2.1
On 09/15/2015 09:12 AM, Ashley Ford wrote: > Steven Backus writes: > >> >> I'm on RHEL 6.6, R version 3.2.1 Patched (2015-07-30 r68761) -- >> "World-Famous Astronaut". Issuing the x11() command hangs R and >> does not complete. A window is partially drawn then freezes. >> Does anyone know of a solution? >> >> Thanks, >> Steve > > > I have the same problem, have you found a solution ? > It's an X server issue as it works from a remote X session. > Why is only R affected ? First question: Are you using the nvidia binary driver? ~tom == Red Hat ___ R-SIG-Fedora mailing list R-SIG-Fedora@r-project.org https://stat.ethz.ch/mailman/listinfo/r-sig-fedora
Re: [R-sig-Fedora] x11() hangs in R 3.2.1
Steven Backus writes: > > I'm on RHEL 6.6, R version 3.2.1 Patched (2015-07-30 r68761) -- > "World-Famous Astronaut". Issuing the x11() command hangs R and > does not complete. A window is partially drawn then freezes. > Does anyone know of a solution? > > Thanks, > Steve I have the same problem, have you found a solution ? It's an X server issue as it works from a remote X session. Why is only R affected ? Ashley ___ R-SIG-Fedora mailing list R-SIG-Fedora@r-project.org https://stat.ethz.ch/mailman/listinfo/r-sig-fedora
[R-sig-Fedora] x11() hangs in R 3.2.1
I'm on RHEL 6.6, R version 3.2.1 Patched (2015-07-30 r68761) -- "World-Famous Astronaut". Issuing the x11() command hangs R and does not complete. A window is partially drawn then freezes. Does anyone know of a solution? Thanks, Steve -- Steven J. BackusComputer Systems Manager University of Utah E-Mail: steven.bac...@utah.edu Genetic EpidemiologyAlternate: bac...@math.utah.edu 391 Chipeta Way -- Suite D Office: 801.587.9308 Salt Lake City, UT 84108-1266 http://www.math.utah.edu/~backus ___ R-SIG-Fedora mailing list R-SIG-Fedora@r-project.org https://stat.ethz.ch/mailman/listinfo/r-sig-fedora
