Thanks, Peter! The funny thing is that I had kept R 4.2 around in the
Frameworks directory, but didn't expect a new installation of R4.4 to
choose that path for libs. I removed R4.2 , then reinstalled R4.4 and now
the correct libs are invoked. I guess some config macro file must have
remained in the list of startup items.
FWIW, after removing R4.2 but before reinstalling R4.4, I tried
'library(dplyr)' , which didn't crash but failed with the error msgs shown
here.
Error: package or namespace load failed for ‘dplyr’ in dyn.load(file,
DLLpath = DLLpath, ...):
unable to load shared object
'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/magrittr/libs/magrittr.so':
dlopen(/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/magrittr/libs/magrittr.so,
0x0006): Library not loaded:
/Library/Frameworks/R.framework/Versions/4.2/Resources/lib/libR.dylib
Referenced from:
/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/magrittr/libs/magrittr.so
Reason: tried:
'/Library/Frameworks/R.framework/Versions/4.2/Resources/lib/libR.dylib' (no
such file),
'/System/Volumes/Preboot/Cryptexes/OS/Library/Frameworks/R.framework/Versions/4.2/Resources/lib/libR.dylib'
(no such file),
'/Library/Frameworks/R.framework/Versions/4.2/Resources/lib/libR.dylib' (no
such file), '/usr/local/lib/libR.dylib' (no such file),
'/usr/lib/libR.dylib' (no such file, not in dyld cac
regards,
Carl
On Tue, Apr 30, 2024 at 4:48 AM peter dalgaard wrote:
> Hmm, worx4me. At least from a fresh source build.
>
> I am suspicious of the "4.2" in a number of entries in your log, e.g.
>
> {
>"source" : "P",
>"arch" : "x86_64",
>"base" : 5029900288,
>"size" : 3260416,
>"uuid" : "c3e6d895-7059-3865-aa61-a941ea1c4569",
>"path" :
>
> "\/Library\/Frameworks\/R.framework\/Versions\/4.2\/Resources\/lib\/libR.dylib",
>
>"name" : "libR.dylib"
> },
>
> which suggests that you may be mixing incompatible binaries. Do you have
> an older private library on your search path? That has bitten me at some
> point.
>
>
> - pd.
>
> > On 30 Apr 2024, at 00:55 , Carl Witthoft wrote:
> >
> > I apologize if the file posted below is the wrong log.
> > I start up R 4.4.0 on my iMac 13.5.2 , type 'library(dplyr)' and r.app
> > gui crashes immediately. Same for ggplot2, gert, stringr, and others .
> >
> > I have verified that I've updated every R library in my system. I can
> > successfully load other libs, e.g., Rmpfr,knitr, MASS, so I doubt it's a
> > directory or permissions problem.
> >
> > From the command line:
> > library(dplyr)
> >
> > *** caught segfault ***
> > address 0x406e0, cause 'memory not mapped'
> >
> > Traceback:
> > 1: fun(libname, pkgname)
> > 2: doTryCatch(return(expr), name, parentenv, handler)
> > 3: tryCatchOne(expr, names, parentenv, handlers[[1L]])
> > 4: tryCatchList(expr, classes, parentenv, handlers)
> > 5: tryCatch(fun(libname, pkgname), error = identity)
> > 6: runHook(".onLoad", env, package.lib, package)
> > 7: loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck =
> > vI[[j]])
> > 8: asNamespace(ns)
> > 9: namespaceImportFrom(ns, loadNamespace(j <- i[[1L]], c(lib.loc,
> > .libPaths()), versionCheck = vI[[j]]), i[[2L]], from = package)
> > 10: loadNamespace(package, lib.loc)
> > 11: doTryCatch(return(expr), name, parentenv, handler)
> > 12: tryCatchOne(expr, names, parentenv, handlers[[1L]])
> > 13: tryCatchList(expr, classes, parentenv, handlers)
> > 14: tryCatch({attr(package, "LibPath") <- which.lib.locns <-
> > loadNamespace(package, lib.loc)env <- attachNamespace(ns, pos = pos,
> > deps, exclude, include.only)}, error = function(e) {P <- if
> > (!is.null(cc <- conditionCall(e))) paste(" in", deparse(cc)[1L])
> > else ""msg <- gettextf("package or namespace load failed for %s%s:\n
> > %s", sQuote(package), P, conditionMessage(e))if
> (logical.return
> > && !quietly) message(paste("Error:", msg), domain = NA)else
> > stop(msg, call. = FALSE, domain = NA)})
> > 15: library(dplyr)
> >
> >
> >
> > ~/library/logs/diagnosticreports file pasted below --
> >
> > {"app_name":"R","timestamp":"2024-04-29 11:11:39.00
> -0400","app_version":"R
> > 4.4.0 GUI 1.80 Big Sur Intel
> >
> build","slice_uuid":"8311af3a-aa38-355b-acef-bbecbdb69a11","build_version":"8376","platform":1,"bundleID":"org.R-project.R","share_with_app_devs":0,"is_first_party":0,"bug_type":"309","os_version":"macOS
> > 13.5.2
> >
> (22G91)","roots_installed":0,"name":"R","incident_id":"059EF229-5343-4EE7-9843-B88A513B8019"}
> >
> > {
> > "uptime" : 26,
> > "procRole" : "Foreground",
> > "version" : 2,
> > "userID" : 502,
> > "deployVersion" : 210,
> > "modelCode" : "iMac19,2",
> > "coalitionID" : 1308,
> > "osVersion" : {
> >"train" : "macOS 13.5.2",
> >"build" : "22G91",
> >"releaseType" : "User"
> > },
> > "captureTime" : "2024-04-29 11:11:38.8062 -0400",
> > "incident" : "059EF229-5343-4
