Re: [R-SIG-Mac] Could not install Package:pdftools in Mac lion 10.7.5

2016-12-27 Thread Christofer Bogaso 
I fix one problem and another problem pops up. After fixing default
locale, I am getting below error when I try loading pdftools :

> install.packages('/Users/ARR/pdftools_1.0.tgz', repos = NULL)
> library(pdftools)
Error in dyn.load(file, DLLpath = DLLpath, ...) :
  unable to load shared object
'/Library/Frameworks/R.framework/Versions/3.2/Resources/library/pdftools/libs/pdftools.so':
  
dlopen(/Library/Frameworks/R.framework/Versions/3.2/Resources/library/pdftools/libs/pdftools.so,
6): Symbol not found: ___exp10
  Referenced from:
/Library/Frameworks/R.framework/Versions/3.2/Resources/library/pdftools/libs/pdftools.so
  Expected in: /usr/lib/libSystem.B.dylib
 in 
/Library/Frameworks/R.framework/Versions/3.2/Resources/library/pdftools/libs/pdftools.so
In addition: Warning message:
package ‘pdftools’ was built under R version 3.2.5
Error: package or namespace load failed for ‘pdftools’

On Wed, Dec 28, 2016 at 12:51 AM, Jeroen Ooms  wrote:
> On Tue, Dec 27, 2016 at 8:09 PM, Christofer Bogaso
>  wrote:
>> It giving below error  :(
>>
>>> install.packages('/Users/ARR/pdftools_1.0.tgz', repos = NULL)
>> tar: Failed to set default locale
>
> I think that is an unrelated problem on your system. See:
>
>  
> http://stackoverflow.com/questions/3907719/how-to-fix-tar-failed-to-set-default-locale-error
>
> But if you didn't get any other error the installation might have
> succeeded? Try loading the package:
>
>   library(pdftools)
>
> If that works you might be OK.

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Re: [R-SIG-Mac] Could not install Package:pdftools in Mac lion 10.7.5

2016-12-27 Thread Jeroen Ooms 
On Tue, Dec 27, 2016 at 8:09 PM, Christofer Bogaso
 wrote:
> It giving below error  :(
>
>> install.packages('/Users/ARR/pdftools_1.0.tgz', repos = NULL)
> tar: Failed to set default locale

I think that is an unrelated problem on your system. See:

 
http://stackoverflow.com/questions/3907719/how-to-fix-tar-failed-to-set-default-locale-error

But if you didn't get any other error the installation might have
succeeded? Try loading the package:

  library(pdftools)

If that works you might be OK.

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Re: [R-SIG-Mac] Could not install Package:pdftools in Mac lion 10.7.5

2016-12-27 Thread Christofer Bogaso 
It giving below error  :(

> install.packages('/Users/ARR/pdftools_1.0.tgz', repos = NULL)
tar: Failed to set default locale

On Wed, Dec 28, 2016 at 12:35 AM, Jeroen Ooms  wrote:
> On Tue, Dec 27, 2016 at 7:27 PM, Christofer Bogaso
>  wrote:
>>
>> I have installed poppler as instructed in below site. However, not
>> libpoppler. Let me know if I need to install libpoppler as well, in
>> that case appreciate any pointer how should I install.
>
> No that's the same thing. It's difficult for me to debug this since
> you're using such an old version of OSX and R. Chances are poppler
> simply doesn't work on such an old system.
>
> But one thing you could try is manually installing the mavericks
> binary package. Download this file to your system:
>
>
> https://cran.r-project.org/bin/macosx/mavericks/contrib/3.2/pdftools_1.0.tgz
>
> And then install it in R using:
>
>   install.packages('~/Downloads/pdftools_1.0.tgz', repos = NULL)
>
> If you're lucky it works :)

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Re: [R-SIG-Mac] Could not install Package:pdftools in Mac lion 10.7.5

2016-12-27 Thread Jeroen Ooms 
On Tue, Dec 27, 2016 at 7:27 PM, Christofer Bogaso
 wrote:
>
> I have installed poppler as instructed in below site. However, not
> libpoppler. Let me know if I need to install libpoppler as well, in
> that case appreciate any pointer how should I install.

No that's the same thing. It's difficult for me to debug this since
you're using such an old version of OSX and R. Chances are poppler
simply doesn't work on such an old system.

But one thing you could try is manually installing the mavericks
binary package. Download this file to your system:

   https://cran.r-project.org/bin/macosx/mavericks/contrib/3.2/pdftools_1.0.tgz

And then install it in R using:

  install.packages('~/Downloads/pdftools_1.0.tgz', repos = NULL)

If you're lucky it works :)

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Re: [R-SIG-Mac] Could not install Package:pdftools in Mac lion 10.7.5

2016-12-27 Thread Christofer Bogaso 
Hi,

I have installed poppler as instructed in below site. However, not
libpoppler. Let me know if I need to install libpoppler as well, in
that case appreciate any pointer how should I install.

I know my Mac version is old now, right now I am not in a position to
get the most recent version.

Thanks,

http://macappstore.org/poppler/

On Tue, Dec 27, 2016 at 11:53 PM, Jeroen Ooms  wrote:
> How did you install libpoppler? Such errors typically appear when you
> link to a shared library which was built with another (incompatible)
> compiler than the one you use for compiling R packages.
>
> Note that Mac lion 10.7.5 has been deprecated for 2 over two years;
> upgrading your OS is highly recommended.
>
>
>
> On Tue, Dec 27, 2016 at 7:05 PM, Christofer Bogaso
>  wrote:
>> Hi,
>>
>> I am trying to install "pdftools" package in R from source, however
>> could not succeeded due to following error.
>>
>> Source file is downloaded from
>> https://cran.r-project.org/web/packages/pdftools/index.html
>>
>> Appreciate for any pointer how to install it properly.
>>
>> I am using R version 3.2.1 (2015-06-18)
>>
>> The loading error :
>>
>> tar: Failed to set default locale
>> During startup - Warning messages:
>> 1: Setting LC_CTYPE failed, using "C"
>> 2: Setting LC_TIME failed, using "C"
>> 3: Setting LC_MESSAGES failed, using "C"
>> 4: Setting LC_MONETARY failed, using "C"
>> * installing *source* package 'pdftools' ...
>> ** package 'pdftools' successfully unpacked and MD5 sums checked
>> Found pkg-config cflags and libs!
>> Using PKG_CFLAGS=-I/usr/local/Cellar/poppler/0.50.0/include/poppler/cpp
>> -I/usr/local/Cellar/poppler/0.50.0/include/poppler
>> Using PKG_LIBS=-L/usr/local/Cellar/poppler/0.50.0/lib -lpoppler-cpp
>> ** libs
>> llvm-g++-4.2 -arch x86_64
>> -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG
>> -I/usr/local/Cellar/poppler/0.50.0/include/poppler/cpp
>> -I/usr/local/Cellar/poppler/0.50.0/include/poppler
>> -I/usr/local/include
>> -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/Rcpp/include"
>>   -fPIC  -mtune=core2 -g -O2  -c RcppExports.cpp -o RcppExports.o
>> llvm-g++-4.2 -arch x86_64
>> -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG
>> -I/usr/local/Cellar/poppler/0.50.0/include/poppler/cpp
>> -I/usr/local/Cellar/poppler/0.50.0/include/poppler
>> -I/usr/local/include
>> -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/Rcpp/include"
>>   -fPIC  -mtune=core2 -g -O2  -c bindings.cpp -o bindings.o
>> llvm-g++-4.2 -arch x86_64
>> -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG
>> -I/usr/local/Cellar/poppler/0.50.0/include/poppler/cpp
>> -I/usr/local/Cellar/poppler/0.50.0/include/poppler
>> -I/usr/local/include
>> -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/Rcpp/include"
>>   -fPIC  -mtune=core2 -g -O2  -c init.cpp -o init.o
>> llvm-g++-4.2 -arch x86_64 -dynamiclib -Wl,-headerpad_max_install_names
>> -undefined dynamic_lookup -single_module -multiply_defined suppress
>> -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib
>> -L/usr/local/lib -o pdftools.so RcppExports.o bindings.o init.o
>> -L/usr/local/Cellar/poppler/0.50.0/lib -lpoppler-cpp
>> -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework
>> -Wl,CoreFoundation
>> installing to 
>> /Library/Frameworks/R.framework/Versions/3.2/Resources/library/pdftools/libs
>> ** R
>> ** preparing package for lazy loading
>> ** help
>> *** installing help indices
>> ** building package indices
>> ** testing if installed package can be loaded
>> During startup - Warning messages:
>> 1: Setting LC_CTYPE failed, using "C"
>> 2: Setting LC_TIME failed, using "C"
>> 3: Setting LC_MESSAGES failed, using "C"
>> 4: Setting LC_MONETARY failed, using "C"
>> Error in dyn.load(file, DLLpath = DLLpath, ...) :
>>   unable to load shared object
>> '/Library/Frameworks/R.framework/Versions/3.2/Resources/library/pdftools/libs/pdftools.so':
>>   
>> dlopen(/Library/Frameworks/R.framework/Versions/3.2/Resources/library/pdftools/libs/pdftools.so,
>> 6): Symbol not found: __ZN7poppler14version_stringEv
>>   Referenced from:
>> /Library/Frameworks/R.framework/Versions/3.2/Resources/library/pdftools/libs/pdftools.so
>>   Expected in: flat namespace
>>  in 
>> /Library/Frameworks/R.framework/Versions/3.2/Resources/library/pdftools/libs/pdftools.so
>> Error: loading failed
>> Execution halted
>> ERROR: loading failed
>> * removing 
>> '/Library/Frameworks/R.framework/Versions/3.2/Resources/library/pdftools'
>> * restoring previous
>> '/Library/Frameworks/R.framework/Versions/3.2/Resources/library/pdftools'
>>
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Re: [R-SIG-Mac] Could not install Package:pdftools in Mac lion 10.7.5

2016-12-27 Thread Jeroen Ooms 
How did you install libpoppler? Such errors typically appear when you
link to a shared library which was built with another (incompatible)
compiler than the one you use for compiling R packages.

Note that Mac lion 10.7.5 has been deprecated for 2 over two years;
upgrading your OS is highly recommended.



On Tue, Dec 27, 2016 at 7:05 PM, Christofer Bogaso
 wrote:
> Hi,
>
> I am trying to install "pdftools" package in R from source, however
> could not succeeded due to following error.
>
> Source file is downloaded from
> https://cran.r-project.org/web/packages/pdftools/index.html
>
> Appreciate for any pointer how to install it properly.
>
> I am using R version 3.2.1 (2015-06-18)
>
> The loading error :
>
> tar: Failed to set default locale
> During startup - Warning messages:
> 1: Setting LC_CTYPE failed, using "C"
> 2: Setting LC_TIME failed, using "C"
> 3: Setting LC_MESSAGES failed, using "C"
> 4: Setting LC_MONETARY failed, using "C"
> * installing *source* package 'pdftools' ...
> ** package 'pdftools' successfully unpacked and MD5 sums checked
> Found pkg-config cflags and libs!
> Using PKG_CFLAGS=-I/usr/local/Cellar/poppler/0.50.0/include/poppler/cpp
> -I/usr/local/Cellar/poppler/0.50.0/include/poppler
> Using PKG_LIBS=-L/usr/local/Cellar/poppler/0.50.0/lib -lpoppler-cpp
> ** libs
> llvm-g++-4.2 -arch x86_64
> -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG
> -I/usr/local/Cellar/poppler/0.50.0/include/poppler/cpp
> -I/usr/local/Cellar/poppler/0.50.0/include/poppler
> -I/usr/local/include
> -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/Rcpp/include"
>   -fPIC  -mtune=core2 -g -O2  -c RcppExports.cpp -o RcppExports.o
> llvm-g++-4.2 -arch x86_64
> -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG
> -I/usr/local/Cellar/poppler/0.50.0/include/poppler/cpp
> -I/usr/local/Cellar/poppler/0.50.0/include/poppler
> -I/usr/local/include
> -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/Rcpp/include"
>   -fPIC  -mtune=core2 -g -O2  -c bindings.cpp -o bindings.o
> llvm-g++-4.2 -arch x86_64
> -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG
> -I/usr/local/Cellar/poppler/0.50.0/include/poppler/cpp
> -I/usr/local/Cellar/poppler/0.50.0/include/poppler
> -I/usr/local/include
> -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/Rcpp/include"
>   -fPIC  -mtune=core2 -g -O2  -c init.cpp -o init.o
> llvm-g++-4.2 -arch x86_64 -dynamiclib -Wl,-headerpad_max_install_names
> -undefined dynamic_lookup -single_module -multiply_defined suppress
> -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib
> -L/usr/local/lib -o pdftools.so RcppExports.o bindings.o init.o
> -L/usr/local/Cellar/poppler/0.50.0/lib -lpoppler-cpp
> -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework
> -Wl,CoreFoundation
> installing to 
> /Library/Frameworks/R.framework/Versions/3.2/Resources/library/pdftools/libs
> ** R
> ** preparing package for lazy loading
> ** help
> *** installing help indices
> ** building package indices
> ** testing if installed package can be loaded
> During startup - Warning messages:
> 1: Setting LC_CTYPE failed, using "C"
> 2: Setting LC_TIME failed, using "C"
> 3: Setting LC_MESSAGES failed, using "C"
> 4: Setting LC_MONETARY failed, using "C"
> Error in dyn.load(file, DLLpath = DLLpath, ...) :
>   unable to load shared object
> '/Library/Frameworks/R.framework/Versions/3.2/Resources/library/pdftools/libs/pdftools.so':
>   
> dlopen(/Library/Frameworks/R.framework/Versions/3.2/Resources/library/pdftools/libs/pdftools.so,
> 6): Symbol not found: __ZN7poppler14version_stringEv
>   Referenced from:
> /Library/Frameworks/R.framework/Versions/3.2/Resources/library/pdftools/libs/pdftools.so
>   Expected in: flat namespace
>  in 
> /Library/Frameworks/R.framework/Versions/3.2/Resources/library/pdftools/libs/pdftools.so
> Error: loading failed
> Execution halted
> ERROR: loading failed
> * removing 
> '/Library/Frameworks/R.framework/Versions/3.2/Resources/library/pdftools'
> * restoring previous
> '/Library/Frameworks/R.framework/Versions/3.2/Resources/library/pdftools'
>
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[R-SIG-Mac] Could not install Package:pdftools in Mac lion 10.7.5

2016-12-27 Thread Christofer Bogaso 
Hi,

I am trying to install "pdftools" package in R from source, however
could not succeeded due to following error.

Source file is downloaded from
https://cran.r-project.org/web/packages/pdftools/index.html

Appreciate for any pointer how to install it properly.

I am using R version 3.2.1 (2015-06-18)

The loading error :

tar: Failed to set default locale
During startup - Warning messages:
1: Setting LC_CTYPE failed, using "C"
2: Setting LC_TIME failed, using "C"
3: Setting LC_MESSAGES failed, using "C"
4: Setting LC_MONETARY failed, using "C"
* installing *source* package 'pdftools' ...
** package 'pdftools' successfully unpacked and MD5 sums checked
Found pkg-config cflags and libs!
Using PKG_CFLAGS=-I/usr/local/Cellar/poppler/0.50.0/include/poppler/cpp
-I/usr/local/Cellar/poppler/0.50.0/include/poppler
Using PKG_LIBS=-L/usr/local/Cellar/poppler/0.50.0/lib -lpoppler-cpp
** libs
llvm-g++-4.2 -arch x86_64
-I/Library/Frameworks/R.framework/Resources/include -DNDEBUG
-I/usr/local/Cellar/poppler/0.50.0/include/poppler/cpp
-I/usr/local/Cellar/poppler/0.50.0/include/poppler
-I/usr/local/include
-I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/Rcpp/include"
  -fPIC  -mtune=core2 -g -O2  -c RcppExports.cpp -o RcppExports.o
llvm-g++-4.2 -arch x86_64
-I/Library/Frameworks/R.framework/Resources/include -DNDEBUG
-I/usr/local/Cellar/poppler/0.50.0/include/poppler/cpp
-I/usr/local/Cellar/poppler/0.50.0/include/poppler
-I/usr/local/include
-I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/Rcpp/include"
  -fPIC  -mtune=core2 -g -O2  -c bindings.cpp -o bindings.o
llvm-g++-4.2 -arch x86_64
-I/Library/Frameworks/R.framework/Resources/include -DNDEBUG
-I/usr/local/Cellar/poppler/0.50.0/include/poppler/cpp
-I/usr/local/Cellar/poppler/0.50.0/include/poppler
-I/usr/local/include
-I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/Rcpp/include"
  -fPIC  -mtune=core2 -g -O2  -c init.cpp -o init.o
llvm-g++-4.2 -arch x86_64 -dynamiclib -Wl,-headerpad_max_install_names
-undefined dynamic_lookup -single_module -multiply_defined suppress
-L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib
-L/usr/local/lib -o pdftools.so RcppExports.o bindings.o init.o
-L/usr/local/Cellar/poppler/0.50.0/lib -lpoppler-cpp
-F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework
-Wl,CoreFoundation
installing to 
/Library/Frameworks/R.framework/Versions/3.2/Resources/library/pdftools/libs
** R
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded
During startup - Warning messages:
1: Setting LC_CTYPE failed, using "C"
2: Setting LC_TIME failed, using "C"
3: Setting LC_MESSAGES failed, using "C"
4: Setting LC_MONETARY failed, using "C"
Error in dyn.load(file, DLLpath = DLLpath, ...) :
  unable to load shared object
'/Library/Frameworks/R.framework/Versions/3.2/Resources/library/pdftools/libs/pdftools.so':
  
dlopen(/Library/Frameworks/R.framework/Versions/3.2/Resources/library/pdftools/libs/pdftools.so,
6): Symbol not found: __ZN7poppler14version_stringEv
  Referenced from:
/Library/Frameworks/R.framework/Versions/3.2/Resources/library/pdftools/libs/pdftools.so
  Expected in: flat namespace
 in 
/Library/Frameworks/R.framework/Versions/3.2/Resources/library/pdftools/libs/pdftools.so
Error: loading failed
Execution halted
ERROR: loading failed
* removing 
'/Library/Frameworks/R.framework/Versions/3.2/Resources/library/pdftools'
* restoring previous
'/Library/Frameworks/R.framework/Versions/3.2/Resources/library/pdftools'

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