Re: [R-SIG-Mac] 64-bit R-build on Mac OS X 10.4
On Nov 6, 2007, at 10:23 PM, Steven McKinney wrote: On Aug 29, 2007, Simon Urbanek wrote (in response to Sayan Pathak): https://stat.ethz.ch/pipermail/r-sig-mac/2007-August/004082.html My apologies if this is a naive question. I am new to Mac and also compiling R from source for the first time. Could you please suggest what should I be doing? Use --without-iconv (or compile 64-bit libiconv from Apple sources if you know how). Tiger has 32-bit iconv only, so you have either to disable iconv support or to get the 64-bit version. Cheers, Simon ### Hi Simon, Would you be able to give more guidance on how to compile 64-bit libiconv for Tiger, You can get the sources from Apple and compile it: http://www.opensource.apple.com/darwinsource/tarballs/other/libiconv-13.2.tar.gz If you want to save yourself the hassle, my 64-bit build can be obtained and installed as follows: curl -s http://r.research.att.com/libiconv-quad.tar.gz | \ sudo tar fvxz - -C /usr/lib Given that it's compiled from Apple sources, it should be identical to the system binary (except that it's not stripped). However, if you feel more comfortable just adding the 64-bit part to your system's iconv, you can do so by unpacking my version and using lipo to extract the x86_64 part and lipo again to add it to /usr/lib/ liviconv.2.dylib Cheers, Simon or is it possible for you to package the 64-bit libiconv you built? I can compile 64-bit R using the --without-iconv Switch, but make check fails when the R iconv() function is encountered in the make check tests. I see this warning after running configure: configure: WARNING: --with-iconv=no is deprecated and will be withdrawn shortly So 64-bit libiconv apparently will soon be required? Best regards Steve McKinney ___ R-SIG-Mac mailing list R-SIG-Mac@stat.math.ethz.ch https://stat.ethz.ch/mailman/listinfo/r-sig-mac ___ R-SIG-Mac mailing list R-SIG-Mac@stat.math.ethz.ch https://stat.ethz.ch/mailman/listinfo/r-sig-mac
Re: [R-SIG-Mac] 64-bit R-build on Mac OS X 10.4
On Nov 6, 2007, at 10:23 PM, Steven McKinney wrote:
Hi Simon,
Would you be able to give more guidance on how to compile 64-bit
libiconv for Tiger,
You can get the sources from Apple and compile it:
http://www.opensource.apple.com/darwinsource/tarballs/other/libiconv-13.2.tar.gz
If you want to save yourself the hassle, my 64-bit build can be
obtained and installed as follows:
curl -s http://r.research.att.com/libiconv-quad.tar.gz | \
sudo tar fvxz - -C /usr/lib
Many thanks Simon, this worked without hassle.
I compiled 64-bit R, but it failed make check.
First failure was in ok-errors.R, and generated this output
in ok-errors.Rout.fail
## bad infinite recursion / on.exit / ... interactions
bar - function() 1+1
foo - function() { on.exit(bar()); foo() }
foo() # now simple infinite recursion
*** caught segfault ***
address 0x7fffeff7ffe30, cause 'memory not mapped'
Traceback:
1: foo()
2: foo()
3: foo()
...
2154: foo()
2155: foo()
2156: foo()
aborting ...
Second error was in d-p-q-r-tests.Rout from this test:
## dbeta(*, ncp):
a - rlnorm(100)
stopifnot(All.eq(a, dbeta(0, 1, a, ncp=0)),
dbeta(0, 0.9, 2.2, ncp = c(0, a)) == Inf
)
## the first gave 0, the 2nd NaN in R = 2.3.0
and generated this
output in d-p-q-r-tests.Rout.fail
## dbeta(*, ncp):
a - rlnorm(100)
stopifnot(All.eq(a, dbeta(0, 1, a, ncp=0)),
+ dbeta(0, 0.9, 2.2, ncp = c(0, a)) == Inf
+ )
Error: dbeta(0, 0.9, 2.2, ncp = c(0, a)) == Inf is not all TRUE
In addition: Warning message:
In dnbeta(x, shape1, shape2, ncp, log) : NaNs produced
Execution halted
Everything else passed, so I'm not sure how serious these failures are.
I'd appreciate any suggestions about
- whether to report this make check failure information anywhere else
- how to figure out what caused these failures (an inappropriate
file somewhere in the path etc.)
Thanks again for making 64-bit libiconv available
Best
Steve McKinney
Given that it's compiled from Apple sources, it should be identical to
the system binary (except that it's not stripped).
However, if you feel more comfortable just adding the 64-bit part to
your system's iconv, you can do so by unpacking my version and using
lipo to extract the x86_64 part and lipo again to add it to /usr/lib/
libiconv.2.dylib
Cheers,
Simon
or is it possible for you to package the 64-bit libiconv you built?
I can compile 64-bit R using the --without-iconv Switch,
but
make check
fails when the R iconv() function is encountered in the
make check tests.
I see this warning after running configure:
configure: WARNING: --with-iconv=no is deprecated and will be
withdrawn shortly
So 64-bit libiconv apparently will soon be required?
Best regards
Steve McKinney
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Re: [R-SIG-Mac] 64-bit R-build on Mac OS X 10.4
Sorry, forgot to include this info
sessionInfo()
R version 2.6.0 Patched (2007-10-29 r43302)
powerpc64-apple-darwin8.10.0
locale:
C
attached base packages:
[1] stats graphics grDevices utils datasets methods base
-Original Message-
From: [EMAIL PROTECTED] on behalf of Steven McKinney
Sent: Wed 11/7/2007 1:52 PM
To: Simon Urbanek
Cc: r-sig-mac@stat.math.ethz.ch
Subject: Re: [R-SIG-Mac] 64-bit R-build on Mac OS X 10.4
On Nov 6, 2007, at 10:23 PM, Steven McKinney wrote:
Hi Simon,
Would you be able to give more guidance on how to compile 64-bit
libiconv for Tiger,
You can get the sources from Apple and compile it:
http://www.opensource.apple.com/darwinsource/tarballs/other/libiconv-13.2.tar.gz
If you want to save yourself the hassle, my 64-bit build can be
obtained and installed as follows:
curl -s http://r.research.att.com/libiconv-quad.tar.gz | \
sudo tar fvxz - -C /usr/lib
Many thanks Simon, this worked without hassle.
I compiled 64-bit R, but it failed make check.
First failure was in ok-errors.R, and generated this output
in ok-errors.Rout.fail
## bad infinite recursion / on.exit / ... interactions
bar - function() 1+1
foo - function() { on.exit(bar()); foo() }
foo() # now simple infinite recursion
*** caught segfault ***
address 0x7fffeff7ffe30, cause 'memory not mapped'
Traceback:
1: foo()
2: foo()
3: foo()
...
2154: foo()
2155: foo()
2156: foo()
aborting ...
Second error was in d-p-q-r-tests.Rout from this test:
## dbeta(*, ncp):
a - rlnorm(100)
stopifnot(All.eq(a, dbeta(0, 1, a, ncp=0)),
dbeta(0, 0.9, 2.2, ncp = c(0, a)) == Inf
)
## the first gave 0, the 2nd NaN in R = 2.3.0
and generated this
output in d-p-q-r-tests.Rout.fail
## dbeta(*, ncp):
a - rlnorm(100)
stopifnot(All.eq(a, dbeta(0, 1, a, ncp=0)),
+ dbeta(0, 0.9, 2.2, ncp = c(0, a)) == Inf
+ )
Error: dbeta(0, 0.9, 2.2, ncp = c(0, a)) == Inf is not all TRUE
In addition: Warning message:
In dnbeta(x, shape1, shape2, ncp, log) : NaNs produced
Execution halted
Everything else passed, so I'm not sure how serious these failures are.
I'd appreciate any suggestions about
- whether to report this make check failure information anywhere else
- how to figure out what caused these failures (an inappropriate
file somewhere in the path etc.)
Thanks again for making 64-bit libiconv available
Best
Steve McKinney
Given that it's compiled from Apple sources, it should be identical to
the system binary (except that it's not stripped).
However, if you feel more comfortable just adding the 64-bit part to
your system's iconv, you can do so by unpacking my version and using
lipo to extract the x86_64 part and lipo again to add it to /usr/lib/
libiconv.2.dylib
Cheers,
Simon
or is it possible for you to package the 64-bit libiconv you built?
I can compile 64-bit R using the --without-iconv Switch,
but
make check
fails when the R iconv() function is encountered in the
make check tests.
I see this warning after running configure:
configure: WARNING: --with-iconv=no is deprecated and will be
withdrawn shortly
So 64-bit libiconv apparently will soon be required?
Best regards
Steve McKinney
___
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R-SIG-Mac@stat.math.ethz.ch
https://stat.ethz.ch/mailman/listinfo/r-sig-mac
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R-SIG-Mac@stat.math.ethz.ch
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