Re: [R-sig-phylo] Building phlyogenies from DNA alignments

2018-09-25 Thread Emmanuel Paradis 

Hi Zhong,

A few good places where to start:

http://ape-package.ird.fr/
https://github.com/KlausVigo/phangorn

For basic introductions, see the vignettes in the package phangorn:

https://CRAN.R-project.org/package=phangorn

Best,

Emmanuel

Le 25/09/2018 à 17:34, Zhong Huang a écrit :

Hello,


I'm attempting to use R to measure the branch lengths of phylogenies 
constructed from DNA sequence alignments. I'm using Seaview to construct the 
trees, but I'm not sure how to import those trees into R (particularly because 
the trees can only be saved as PDFs or SVGs). I'm hoping that there's a method 
to construct phylogenetic trees from DNA alignments using R.


Apologies if this question has already been addressed. I was unable to find it 
in the archive.


Best,


Zhong Huang

Duke University, Class of 2019

LinkedIn

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[R-sig-phylo] Building phlyogenies from DNA alignments

2018-09-25 Thread Zhong Huang 
Hello,


I'm attempting to use R to measure the branch lengths of phylogenies 
constructed from DNA sequence alignments. I'm using Seaview to construct the 
trees, but I'm not sure how to import those trees into R (particularly because 
the trees can only be saved as PDFs or SVGs). I'm hoping that there's a method 
to construct phylogenetic trees from DNA alignments using R.


Apologies if this question has already been addressed. I was unable to find it 
in the archive.


Best,


Zhong Huang

Duke University, Class of 2019

LinkedIn

[[alternative HTML version deleted]]

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